Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0006796

Physical Location & Seq

Genomic Coordinates Reverse (-)

301467 .. 303875

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000079.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgacacagcacccgacctcctcttcctcatcctccgcctccaaccagcacccaactactctccgcctcggcctccgtctccactctcctccttctctgcctccgtctccgttctcctcctcctcctcctccgacacacctcttctctcatctctcttctcaaatccaccaatgatgcagtccataccggagctccgccttgttccctcgtcgagcccaccatggaagataagacctaacattcaagacaaggctcgccgtcgatccaggactgaaattactctcaagatgttggatatgaagaccatcttctttttccttgtaggaataccttgttacagcatccaagaaccagatcttcaatatatgtcatggatcaatctgggatggatctttgaattatttatgagtgagttcttgaatgtgggagtggagtgcaagttttgtgatcttgagttggctgagttgaaaacgttgcctagaagtagaactgatgatggcttgttttccgtggaaagcatgaagtcgcaaacaagaggtcatgaggtgaagaggctgttctggggaagtgttggcaatggagctgggtgctacaaggatagagaaaaaattggttttgctttaagttcacttgacaaattagtcagtgtcctgatacatcttttacctaggttggttttcttcactattcgatggtgggatccagcaacatttgcagccacgcatcctgaaggatcttctgccatagcttcttggccttatgtagaaagcaaaacttatatgtggacatggttgtttgtggtgcccctggtcgcatactccctatggcagcttttgtattttctcattgtcaacgttttacgccgacaaaggctgttaagggatcctgaagtgatgacttcttacaggtccaatctctcaccgtcctcattcccggcgttttggttcatgtcctttctttcacccttatctgattatttcattcttgacagagaactcttgaagaaggcgcaaaaagcaaacaatttgtggtggcgcttaagcggtttgcttggggatcaaaatcgattgtttatgtacattgttcaaatagttagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2838

Protein Analysis

366

Amino Acids

42.14

Weight (kDa)

9.49

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35460 AT5G35460
fragaria_vesca	FvH4_1g08120
malus_domestica	MD02G1085700.v1.1 MD15G1212900.v1.1
prunus_persica	Prupe.7G204000_v2.0.a1 Prupe.7G204000_v2.0.a1
pyrus_communis	pycom02g06850 pycom15g18920
rosa_chinensis	RchiOBHm_Chr2g0094171
rosa_laevigata	RLG00000016462
rosa_multiflora	Rmu_sc0002193.1_g000001 Rmu_sc0002892.1_g000079
rosa_roxburghii	Rroxscaffold_2G00147420
rosa_rugosa	Rorug02G0041500
rosa_samantha	Rh2AG089200 Rh2BG089300 Rh2BG465000 Rh2CG091800 Rh2DG088300 Rh2DG473900 Rh5DG076200 Rh5DG406800 Rh6BG042400
rosa_wichuraiana	Rw7G037100 Rw7G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	802
AciI	CCGC	4 cut(s)	36, 64, 196, 1044
AclI	AACGTT	2 cut(s)	473, 855
AclWI	GGATC	9 cut(s)	258, 383, 398, 695, 708, 742, 878, 891, 1065
AcuI	CTGAAG	2 cut(s)	750, 909
AfaI	GTAC	1 cut(s)	1079
AflII	CTTAAG	1 cut(s)	1039
AgsI	TTSAA	7 cut(s)	245, 362, 398, 421, 469, 1003, 1088
AjnI	CCWGG	2 cut(s)	266, 807
AluBI	AGCT	4 cut(s)	193, 584, 749, 832
AluI	AGCT	4 cut(s)	193, 584, 749, 832
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	83, 111
AlwI	GGATC	9 cut(s)	258, 383, 398, 695, 708, 742, 878, 891, 1065
AoxI	GGCC	2 cut(s)	70, 755
ApeKI	GCWGC	2 cut(s)	716, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AspA2I	CCTAGG	1 cut(s)	668
AspLEI	GCGC	2 cut(s)	1012, 1038
AspS9I	GGNCC	1 cut(s)	909
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	3 cut(s)	559, 912, 954
AvaII	GGWCC	1 cut(s)	909
AvrII	CCTAGG	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	807
BamHI	GGATCC	2 cut(s)	700, 883
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	2 cut(s)	195, 218
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	728, 841
BccI	CCATC	4 cut(s)	314, 381, 491, 687
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	268, 809
BcnI	CCSGG	1 cut(s)	935
BcoDI	GTCTC	2 cut(s)	83, 111
BfaI	CTAG	2 cut(s)	480, 669
BfoI	RGCGCY	1 cut(s)	1039
BfrI	CTTAAG	1 cut(s)	1039
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	717, 830
BlnI	CCTAGG	1 cut(s)	668
BlsI	GCNGC	2 cut(s)	718, 831
Bme1390I	CCNGG	3 cut(s)	268, 809, 935
Bme18I	GGWCC	1 cut(s)	909
BmgT120I	GGNCC	1 cut(s)	909
BmiI	GGNNCC	3 cut(s)	702, 804, 885
BmrFI	CCNGG	3 cut(s)	268, 809, 935
BmsI	GCATC	3 cut(s)	165, 351, 733
BpiI	GAAGAC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	269, 473
BpuMI	CCSGG	1 cut(s)	935
Bsa29I	ATCGAT	1 cut(s)	1066
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaJI	CCNNGG	5 cut(s)	67, 221, 510, 668, 807
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 177, 207, 425, 455
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	2 cut(s)	268, 809
BseCI	ATCGAT	1 cut(s)	1066
BseDI	CCNNGG	5 cut(s)	67, 221, 510, 668, 807
BseGI	GGATG	4 cut(s)	29, 342, 392, 724
BseJI	GATNNNNATC	1 cut(s)	1062
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	453
BseRI	GAGGAG	7 cut(s)	10, 78, 106, 109, 112, 115, 118
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	2 cut(s)	728, 841
BseYI	CCCAGC	1 cut(s)	584
BshFI	GGCC	2 cut(s)	72, 757
BshNI	GGYRCC	1 cut(s)	802
BshVI	ATCGAT	1 cut(s)	1066
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	188, 935
BsmAI	GTCTC	2 cut(s)	83, 111
BsmBI	CGTCTC	2 cut(s)	83, 111
BsnI	GGCC	2 cut(s)	72, 757
Bsp1286I	GDGCHC	3 cut(s)	195, 218, 807
Bsp1407I	TGTACA	1 cut(s)	1077
Bsp143I	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	4 cut(s)	36, 64, 196, 1044
BspANI	GGCC	2 cut(s)	72, 757
BspCNI	CTCAG	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	1066
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	702, 804, 885
BspPI	GGATC	9 cut(s)	258, 383, 398, 695, 708, 742, 878, 891, 1065
BspT107I	GGYRCC	1 cut(s)	802
BspTI	CTTAAG	1 cut(s)	1039
BsrDI	GCAATG	1 cut(s)	583
BsrGI	TGTACA	1 cut(s)	1077
BssECI	CCNNGG	5 cut(s)	67, 221, 510, 668, 807
BssMI	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
BssT1I	CCWWGG	2 cut(s)	221, 668
Bst2UI	CCWGG	2 cut(s)	268, 809
Bst4CI	ACNGT	1 cut(s)	924
Bst6I	CTCTTC	4 cut(s)	28, 147, 161, 545
BstAFI	CTTAAG	1 cut(s)	1039
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	1077
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	462
BstDSI	CCRYGG	2 cut(s)	221, 510
BstF5I	GGATG	4 cut(s)	29, 342, 392, 724
BstH2I	RGCGCY	1 cut(s)	1039
BstHHI	GCGC	2 cut(s)	1012, 1038
BstKTI	GATC	9 cut(s)	266, 358, 378, 393, 451, 703, 737, 886, 1060
BstMAI	GTCTC	2 cut(s)	83, 111
BstMBI	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	713, 1016
BstNI	CCWGG	2 cut(s)	268, 809
BstSCI	CCNGG	3 cut(s)	266, 807, 933
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	2 cut(s)	728, 841
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	5 cut(s)	355, 390, 700, 734, 883
BstYI	RGATCY	5 cut(s)	355, 390, 700, 734, 883
Bsu15I	ATCGAT	1 cut(s)	1066
BsuRI	GGCC	2 cut(s)	72, 757
BsuTUI	ATCGAT	1 cut(s)	1066
BtgI	CCRYGG	2 cut(s)	221, 510
BtsCI	GGATG	4 cut(s)	29, 342, 392, 724
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	1012, 1038
Cfr13I	GGNCC	1 cut(s)	909
ClaI	ATCGAT	1 cut(s)	1066
Csp6I	GTAC	1 cut(s)	1078
CviAII	CATG	6 cut(s)	222, 372, 520, 542, 789, 949
CviQI	GTAC	1 cut(s)	1078
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	9 cut(s)	265, 357, 377, 392, 450, 702, 736, 885, 1059
DpnII	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
Eam1104I	CTCTTC	4 cut(s)	28, 147, 161, 545
EarI	CTCTTC	4 cut(s)	28, 147, 161, 545
EciI	GGCGGA	3 cut(s)	25, 53, 185
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	221, 668
Eco24I	GRGCYC	2 cut(s)	195, 218
Eco47I	GGWCC	1 cut(s)	909
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	750, 909
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	266, 807
EcoT14I	CCWWGG	2 cut(s)	221, 668
EcoT38I	GRGCYC	2 cut(s)	195, 218
ErhI	CCWWGG	2 cut(s)	221, 668
Esp3I	CGTCTC	2 cut(s)	83, 111
FaeI	CATG	6 cut(s)	225, 375, 523, 545, 792, 952
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 760, 792
FatI	CATG	6 cut(s)	221, 371, 519, 541, 788, 948
Fnu4HI	GCNGC	2 cut(s)	717, 830
FokI	GGATG	4 cut(s)	16, 329, 399, 711
FriOI	GRGCYC	2 cut(s)	195, 218
Fsp4HI	GCNGC	2 cut(s)	717, 830
FspBI	CTAG	2 cut(s)	480, 669
GlaI	GCGC	2 cut(s)	1011, 1037
GluI	GCNGC	2 cut(s)	717, 830
GsaI	CCCAGC	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	1039
HaeIII	GGCC	2 cut(s)	72, 757
HapII	CCGG	2 cut(s)	188, 935
HhaI	GCGC	2 cut(s)	1012, 1038
Hin1II	CATG	6 cut(s)	225, 375, 523, 545, 792, 952
Hin6I	GCGC	2 cut(s)	1010, 1036
HinP1I	GCGC	2 cut(s)	1010, 1036
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HpaII	CCGG	2 cut(s)	188, 935
HphI	GGTGA	3 cut(s)	559, 912, 954
Hpy166II	GTNNAC	3 cut(s)	629, 786, 853
Hpy188I	TCNGA	2 cut(s)	133, 973
Hpy8I	GTNNAC	3 cut(s)	629, 786, 853
Hpy99I	CGWCG	2 cut(s)	214, 264
HpyAV	CCTTC	3 cut(s)	102, 725, 1000
HpyCH4III	ACNGT	1 cut(s)	924
HpyCH4IV	ACGT	2 cut(s)	473, 855
HpyCH4V	TGCA	3 cut(s)	178, 438, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	713, 1016
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	2 cut(s)	473, 855
Hsp92II	CATG	6 cut(s)	225, 375, 523, 545, 792, 952
HspAI	GCGC	2 cut(s)	1010, 1036
Kzo9I	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
LmnI	GCTCC	3 cut(s)	190, 198, 581
Lsp1109I	GCAGC	2 cut(s)	728, 841
LweI	GCATC	3 cut(s)	165, 351, 733
MaeI	CTAG	2 cut(s)	480, 669
MaeII	ACGT	2 cut(s)	473, 855
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	9 cut(s)	265, 357, 377, 392, 450, 702, 736, 885, 1059
MboI	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
MflI	RGATCY	5 cut(s)	355, 390, 700, 734, 883
MhlI	GDGCHC	3 cut(s)	195, 218, 807
MluCI	AATT	5 cut(s)	276, 398, 609, 638, 1024
MmeI	TCCRAC	3 cut(s)	66, 156, 273
MseI	TTAA	3 cut(s)	623, 878, 1040
MspCI	CTTAAG	1 cut(s)	1039
MspI	CCGG	2 cut(s)	188, 935
MspR9I	CCNGG	3 cut(s)	268, 809, 935
MvaI	CCWGG	2 cut(s)	268, 809
MwoI	GCNNNNNNNGC	2 cut(s)	713, 1016
NciI	CCSGG	1 cut(s)	935
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
NlaIII	CATG	6 cut(s)	225, 375, 523, 545, 792, 952
NlaIV	GGNNCC	3 cut(s)	702, 804, 885
NmeAIII	GCCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	541
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	718, 831
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	2 cut(s)	473, 855
Psp6I	CCWGG	2 cut(s)	266, 807
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	2 cut(s)	266, 807
PspN4I	GGNNCC	3 cut(s)	702, 804, 885
PspPI	GGNCC	1 cut(s)	909
PsuI	RGATCY	5 cut(s)	355, 390, 700, 734, 883
RsaI	GTAC	1 cut(s)	1079
RsaNI	GTAC	1 cut(s)	1078
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	623, 878, 1040
SatI	GCNGC	2 cut(s)	717, 830
Sau3AI	GATC	9 cut(s)	263, 355, 375, 390, 448, 700, 734, 883, 1057
Sau96I	GGNCC	1 cut(s)	909
ScrFI	CCNGG	3 cut(s)	268, 809, 935
SduI	GDGCHC	3 cut(s)	195, 218, 807
SfaNI	GCATC	3 cut(s)	165, 351, 733
SinI	GGWCC	1 cut(s)	909
SmlI	CTYRAG	3 cut(s)	284, 452, 1039
SmoI	CTYRAG	3 cut(s)	284, 452, 1039
Sse9I	AATT	5 cut(s)	276, 398, 609, 638, 1024
SsiI	CCGC	4 cut(s)	36, 64, 196, 1044
SspMI	CTAG	2 cut(s)	480, 669
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	266, 807, 933
StyI	CCWWGG	2 cut(s)	221, 668
TaaI	ACNGT	1 cut(s)	924
TaiI	ACGT	2 cut(s)	476, 858
TaqI	TCGA	4 cut(s)	212, 262, 691, 1066
TasI	AATT	5 cut(s)	276, 398, 609, 638, 1024
TatI	WGTACW	1 cut(s)	1077
Tru1I	TTAA	3 cut(s)	623, 878, 1040
Tru9I	TTAA	3 cut(s)	623, 878, 1040
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	2 cut(s)	716, 829
TspDTI	ATGAA	4 cut(s)	314, 536, 937, 970
TspGWI	ACGGA	4 cut(s)	65, 93, 99, 499
TspRI	CASTG	1 cut(s)	652
Vha464I	CTTAAG	1 cut(s)	1039
VpaK11BI	GGWCC	1 cut(s)	909
XmaJI	CCTAGG	1 cut(s)	668
XspI	CTAG	2 cut(s)	480, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.