Rh2DG473900

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006796
Physical Location & Seq
Reverse (-)
68584442 .. 68587486
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG473900.1

Sequence Viewer

Length: 1104 bp
ATGGTCATCGGGACGCTGCCCGGCATGGTCATCGGGACGCTGCCCGGCATGGACATCGGGACGCTGCCCGGCATGGACATCGGGACGCTGCCCGGCATGGTCATCGGGACGCTGCCCGGCATGGTCATCGGGAAGCTGCCCGGCATGGTCATCGGGAAGCTGCCCGGCATGGTCATCGGAGGCGCTGCTCCGGCATGTTTCAAAGAGGAGGTGGAGCTTGTGAACATCCAAAGAGGAGGTGGAGCTTGTGAACATTCAAAGAGAAGGTGGAGCATGGAAGGGAGGGAATCTCAACCTTTGTGGTGTCTTGGATATCTCTCCGAACTTCGTCTTCCAAGCTGCTTCTTGCCTTCACTGCTTTGTCCTTCTTCTTTTCCACGTTGCTATCCTCCTGCTGCCTCTTCACGTTGCGGCGTTGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCGGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTAATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCACGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTATGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTATGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACATGTCCAATCTCTCACCGTCCTCATTCCCTGCGTTTTGGTTCATGTCCTTTCTTTCACCCTTATCTGATTATTTCATTCTTGACAGAGAACTCTCGAAGAAGGAGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTACATTGTTCAAGTAGTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

367

Amino Acids

41.45

Weight (kDa)

8.72

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 160 - 217 1.3e-18 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 805
AciI CCGC 2 cut(s) 411, 1047
AclI AACGTT 1 cut(s) 858
AclWI GGATC 6 cut(s) 698, 711, 745, 881, 894, 1068
AcuI CTGAAG 3 cut(s) 448, 753, 912
AfaI GTAC 1 cut(s) 1082
AflII CTTAAG 1 cut(s) 1042
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 4 cut(s) 202, 258, 419, 1091
AjnI CCWGG 2 cut(s) 670, 810
AluBI AGCT 8 cut(s) 136, 160, 217, 245, 339, 618, 752, 835
AluI AGCT 8 cut(s) 136, 160, 217, 245, 339, 618, 752, 835
AlwI GGATC 6 cut(s) 698, 711, 745, 881, 894, 1068
AoxI GGCC 2 cut(s) 581, 758
AspLEI GCGC 2 cut(s) 185, 1041
AspS9I GGNCC 1 cut(s) 581
AsuC2I CCSGG 8 cut(s) 21, 45, 69, 93, 117, 141, 165, 482
AsuHPI GGTGA 2 cut(s) 915, 957
BaeGI GKGCMC 2 cut(s) 598, 810
BamHI GGATCC 2 cut(s) 703, 886
BanI GGYRCC 1 cut(s) 805
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbsI GAAGAC 2 cut(s) 323, 451
BbvCI CCTCAGC 1 cut(s) 576
BccI CCATC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 672, 812
BcnI CCSGG 8 cut(s) 21, 45, 69, 93, 117, 141, 165, 482
BfaI CTAG 1 cut(s) 474
BfoI RGCGCY 2 cut(s) 186, 1042
BfrI CTTAAG 1 cut(s) 1042
BglII AGATCT 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 4 cut(s) 582, 705, 807, 888
BmsI GCATC 2 cut(s) 443, 736
BpiI GAAGAC 2 cut(s) 323, 451
BplI GAGNNNNNCTC 2 cut(s) 274, 306
Bpu10I CCTNAGC 1 cut(s) 576
BpuMI CCSGG 8 cut(s) 21, 45, 69, 93, 117, 141, 165, 482
Bsa29I ATCGAT 1 cut(s) 1069
BsaBI GATNNNNATC 1 cut(s) 1065
BsaJI CCNNGG 3 cut(s) 536, 671, 810
Bse8I GATNNNNATC 1 cut(s) 1065
BseBI CCWGG 2 cut(s) 672, 812
BseCI ATCGAT 1 cut(s) 1069
BseDI CCNNGG 3 cut(s) 536, 671, 810
BseGI GGATG 3 cut(s) 225, 434, 727
BseJI GATNNNNATC 1 cut(s) 1065
BseMII CTCAG 1 cut(s) 567
BseRI GAGGAG 2 cut(s) 221, 249
BseSI GKGCMC 2 cut(s) 598, 810
BshFI GGCC 2 cut(s) 583, 760
BshNI GGYRCC 1 cut(s) 805
BshVI ATCGAT 1 cut(s) 1069
BsiSI CCGG 9 cut(s) 21, 45, 69, 93, 117, 141, 165, 191, 481
BslFI GGGAC 6 cut(s) 25, 49, 73, 97, 121, 497
BsmFI GGGAC 6 cut(s) 25, 49, 73, 97, 121, 497
BsnI GGCC 2 cut(s) 583, 760
Bsp1286I GDGCHC 2 cut(s) 598, 810
Bsp1407I TGTACA 1 cut(s) 1080
Bsp143I GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
BspACI CCGC 2 cut(s) 411, 1047
BspANI GGCC 2 cut(s) 583, 760
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 1 cut(s) 1069
BspLI GGNNCC 4 cut(s) 582, 705, 807, 888
BspPI GGATC 6 cut(s) 698, 711, 745, 881, 894, 1068
BspT107I GGYRCC 1 cut(s) 805
BspTI CTTAAG 1 cut(s) 1042
BsrGI TGTACA 1 cut(s) 1080
BssECI CCNNGG 3 cut(s) 536, 671, 810
BssMI GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 672, 812
Bst4CI ACNGT 1 cut(s) 927
Bst6I CTCTTC 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 1042
BstAPI GCANNNNNTGC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 1080
BstDEI CTNAG 1 cut(s) 576
BstF5I GGATG 3 cut(s) 225, 434, 727
BstH2I RGCGCY 2 cut(s) 186, 1042
BstHHI GCGC 2 cut(s) 185, 1041
BstKTI GATC 6 cut(s) 450, 510, 706, 740, 889, 1063
BstMBI GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
BstMWI GCNNNNNNNGC 3 cut(s) 191, 355, 716
BstNI CCWGG 2 cut(s) 672, 812
BstNSI RCATGY 2 cut(s) 198, 913
BstSLI GKGCMC 2 cut(s) 598, 810
BstV2I GAAGAC 2 cut(s) 323, 451
BstX2I RGATCY 4 cut(s) 447, 703, 737, 886
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 4 cut(s) 447, 703, 737, 886
Bsu15I ATCGAT 1 cut(s) 1069
BsuRI GGCC 2 cut(s) 583, 760
BsuTUI ATCGAT 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 225, 434, 727
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 353, 655
CfoI GCGC 2 cut(s) 185, 1041
Cfr13I GGNCC 1 cut(s) 581
ClaI ATCGAT 1 cut(s) 1069
CseI GACGC 5 cut(s) 22, 46, 70, 94, 118
Csp6I GTAC 1 cut(s) 1081
CspCI CAANNNNNGTGG 2 cut(s) 281, 316
CviQI GTAC 1 cut(s) 1081
DdeI CTNAG 1 cut(s) 576
DpnI GATC 6 cut(s) 449, 509, 705, 739, 888, 1062
DpnII GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
DrdI GACNNNNNNGTC 1 cut(s) 644
DseDI GACNNNNNNGTC 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 536
Eco32I GATATC 1 cut(s) 314
Eco57I CTGAAG 3 cut(s) 448, 753, 912
EcoRII CCWGG 2 cut(s) 670, 810
EcoRV GATATC 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 536
FalI AAGNNNNNCTT 2 cut(s) 763, 795
FaqI GGGAC 6 cut(s) 25, 49, 73, 97, 121, 497
FokI GGATG 3 cut(s) 212, 421, 714
FspBI CTAG 1 cut(s) 474
GlaI GCGC 2 cut(s) 184, 1040
HaeII RGCGCY 2 cut(s) 186, 1042
HaeIII GGCC 2 cut(s) 583, 760
HapII CCGG 9 cut(s) 21, 45, 69, 93, 117, 141, 165, 191, 481
HgaI GACGC 5 cut(s) 22, 46, 70, 94, 118
HhaI GCGC 2 cut(s) 185, 1041
Hin6I GCGC 2 cut(s) 183, 1039
HinP1I GCGC 2 cut(s) 183, 1039
HincII GTYRAC 2 cut(s) 520, 856
HindII GTYRAC 2 cut(s) 520, 856
HinfI GANTC 2 cut(s) 287, 477
HpaII CCGG 9 cut(s) 21, 45, 69, 93, 117, 141, 165, 191, 481
HphI GGTGA 2 cut(s) 915, 957
Hpy166II GTNNAC 6 cut(s) 223, 251, 520, 632, 789, 856
Hpy188I TCNGA 4 cut(s) 179, 322, 976, 1100
Hpy8I GTNNAC 6 cut(s) 223, 251, 520, 632, 789, 856
HpyAV CCTTC 7 cut(s) 258, 272, 360, 375, 533, 728, 1003
HpyCH4III ACNGT 1 cut(s) 927
HpyCH4IV ACGT 3 cut(s) 379, 406, 858
HpyCH4V TGCA 1 cut(s) 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 355, 716
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 3 cut(s) 379, 406, 858
HspAI GCGC 2 cut(s) 183, 1039
Kzo9I GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
LmnI GCTCC 5 cut(s) 193, 214, 242, 270, 1012
LweI GCATC 2 cut(s) 443, 736
MaeI CTAG 1 cut(s) 474
MaeII ACGT 3 cut(s) 379, 406, 858
MaeIII GTNAC 1 cut(s) 427
MalI GATC 6 cut(s) 449, 509, 705, 739, 888, 1062
MboI GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
MboII GAAGA 9 cut(s) 323, 360, 393, 451, 454, 518, 676, 732, 1018
MflI RGATCY 4 cut(s) 447, 703, 737, 886
MhlI GDGCHC 2 cut(s) 598, 810
MluCI AATT 3 cut(s) 600, 641, 1027
MlyI GAGTC 1 cut(s) 471
MseI TTAA 2 cut(s) 881, 1043
MslI CAYNNNNRTG 1 cut(s) 589
MspCI CTTAAG 1 cut(s) 1042
MspI CCGG 9 cut(s) 21, 45, 69, 93, 117, 141, 165, 191, 481
MvaI CCWGG 2 cut(s) 672, 812
MwoI GCNNNNNNNGC 3 cut(s) 191, 355, 716
NciI CCSGG 8 cut(s) 21, 45, 69, 93, 117, 141, 165, 482
NdeII GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
NlaIV GGNNCC 4 cut(s) 582, 705, 807, 888
NspI RCATGY 2 cut(s) 198, 913
PciI ACATGT 1 cut(s) 909
PfeI GAWTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 480
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
PscI ACATGT 1 cut(s) 909
Psp1406I AACGTT 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 670, 810
PspGI CCWGG 2 cut(s) 670, 810
PspN4I GGNNCC 4 cut(s) 582, 705, 807, 888
PspPI GGNCC 1 cut(s) 581
PsuI RGATCY 4 cut(s) 447, 703, 737, 886
RsaI GTAC 1 cut(s) 1082
RsaNI GTAC 1 cut(s) 1081
RseI CAYNNNNRTG 1 cut(s) 589
SaqAI TTAA 2 cut(s) 881, 1043
Sau3AI GATC 6 cut(s) 447, 507, 703, 737, 886, 1060
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 471
SduI GDGCHC 2 cut(s) 598, 810
SfaNI GCATC 2 cut(s) 443, 736
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
Sse9I AATT 3 cut(s) 600, 641, 1027
SsiI CCGC 2 cut(s) 411, 1047
SspMI CTAG 1 cut(s) 474
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 1 cut(s) 927
TaiI ACGT 3 cut(s) 382, 409, 861
TaqI TCGA 3 cut(s) 694, 1004, 1069
TasI AATT 3 cut(s) 600, 641, 1027
TatI WGTACW 1 cut(s) 1080
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 881, 1043
Tru9I TTAA 2 cut(s) 881, 1043
TscAI CASTG 2 cut(s) 360, 655
TspDTI ATGAA 4 cut(s) 544, 558, 940, 973
TspRI CASTG 2 cut(s) 360, 655
Vha464I CTTAAG 1 cut(s) 1042
XceI RCATGY 2 cut(s) 198, 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.