Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006796

Physical Location & Seq

Genomic Coordinates Forward (+)

3232486 .. 3234262

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCAGGGAAGGGCGCGAAGGGTTTGATTATGGGCAAAGGTGCCAGCAACAATAAAGACAAGGACAAGAAGAAACCCACCTCGAGATCCTCACGAGCTGGCCTTCAGTTTCCTGTGGGTCGTATCCACCGTCTCCTGAAGCAAAGGACCACAGCTAATGGGAGAGTGGGAGCAACTGCTGCAGTTTATTCTGCAGCTATCTTGGAGTATCTGACTGCTGAAGTTTTAGAGTTGGCAGGCAATGCCAGTAAAGATCTGAAGGTGAAACGTATCACTCCCAGGCATTTGCAGCTTGCAATCCGTGGTGACGAAGAACTTGATACTCTGATTAAAGGTACCATTGCTGGTGGAGGTGTCATCCCTCACATTCACAAGTCACTTATCAACAAGTCCACCAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2838

Protein Analysis

134

Amino Acids

14.31

Weight (kDa)

10.39

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	18 - 102	7.1e-20	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	104 - 133	7e-11	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35460 AT5G35460
fragaria_vesca	FvH4_1g08120
malus_domestica	MD02G1085700.v1.1 MD15G1212900.v1.1
prunus_persica	Prupe.7G204000_v2.0.a1 Prupe.7G204000_v2.0.a1
pyrus_communis	pycom02g06850 pycom15g18920
rosa_chinensis	RchiOBHm_Chr2g0094171
rosa_laevigata	RLG00000016462
rosa_multiflora	Rmu_sc0002193.1_g000001 Rmu_sc0002892.1_g000079
rosa_roxburghii	Rroxscaffold_2G00147420
rosa_rugosa	Rorug02G0041500
rosa_samantha	Rh2AG089200 Rh2BG089300 Rh2BG465000 Rh2CG091800 Rh2DG088300 Rh2DG473900 Rh5DG076200 Rh5DG406800 Rh6BG042400
rosa_wichuraiana	Rw7G037100 Rw7G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	2 cut(s)	41, 335
AccII	CGCG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	4 cut(s)	89, 158, 240, 278
AfaI	GTAC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	98, 155, 197, 292
AluI	AGCT	4 cut(s)	98, 155, 197, 292
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	179, 194, 289
Asp718I	GGTACC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	274, 317
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	147
BanI	GGYRCC	2 cut(s)	41, 335
BauI	CACGAG	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	166, 206, 301
BciT130I	CCWGG	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	180, 192
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	180, 195, 290
BlsI	GCNGC	3 cut(s)	181, 196, 291
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	43, 337
BmrFI	CCNGG	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	278, 301, 396
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	247, 339
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	278, 301, 396
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	2 cut(s)	247, 339
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	166, 206, 301
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	2 cut(s)	41, 335
BsiHKCI	CYCGRG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	86, 253
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	43, 337
BspMAI	CTGCAG	2 cut(s)	184, 196
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	2 cut(s)	41, 335
BsrDI	GCAATG	2 cut(s)	247, 339
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	278, 301, 396
BssMI	GATC	2 cut(s)	86, 253
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	131
BstAPI	GCANNNNNTGC	2 cut(s)	179, 242
BstC8I	GCNNGC	4 cut(s)	46, 100, 238, 294
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	89, 256
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	86, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 242, 289
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	2 cut(s)	180, 192
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	166, 206, 301
BstX2I	RGATCY	2 cut(s)	86, 253
BstYI	RGATCY	2 cut(s)	86, 253
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	4 cut(s)	46, 100, 238, 294
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	336
CviJI	RGCY	5 cut(s)	98, 102, 155, 197, 292
CviKI_1	RGCY	5 cut(s)	98, 102, 155, 197, 292
CviQI	GTAC	1 cut(s)	336
DpnI	GATC	2 cut(s)	88, 255
DpnII	GATC	2 cut(s)	86, 253
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	4 cut(s)	89, 158, 240, 278
Eco88I	CYCGRG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	137
FaiI	YATR	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	180, 195, 290
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	180, 195, 290
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	3 cut(s)	180, 195, 290
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HphI	GGTGA	2 cut(s)	274, 317
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	3 cut(s)	213, 258, 327
Hpy188III	TCNNGA	3 cut(s)	84, 93, 136
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	4 cut(s)	4, 13, 113, 253
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	182, 194, 289, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 242, 289
HpySE526I	ACGT	1 cut(s)	268
HspAI	GCGC	1 cut(s)	15
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	86, 253
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	9 cut(s)	58, 84, 126, 149, 222, 259, 265, 292, 330
Lsp1109I	GCAGC	3 cut(s)	166, 206, 301
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	2 cut(s)	305, 375
MalI	GATC	2 cut(s)	88, 255
MboI	GATC	2 cut(s)	86, 253
MboII	GAAGA	2 cut(s)	82, 323
MflI	RGATCY	2 cut(s)	86, 253
MnlI	CCTC	4 cut(s)	91, 100, 344, 372
MseI	TTAA	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	179, 242, 289
NdeII	GATC	2 cut(s)	86, 253
NlaIV	GGNNCC	2 cut(s)	43, 337
NmuCI	GTSAC	2 cut(s)	305, 375
PaeR7I	CTCGAG	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	181, 196, 291
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	43, 337
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	2 cut(s)	184, 196
PsuI	RGATCY	2 cut(s)	86, 253
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	180, 195, 290
Sau3AI	GATC	2 cut(s)	86, 253
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	180, 192
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	305, 375
TseI	GCWGC	3 cut(s)	179, 194, 289
Tsp45I	GTSAC	2 cut(s)	305, 375
TspGWI	ACGGA	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.