Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006796

Physical Location & Seq

Genomic Coordinates Forward (+)

18902963 .. 18906097

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G204000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCCAATAACGAAGAGCCCGTGGAGGAAACAAATGGGGATTCATTTCACATAGTGAAGCAGGGTTTGAAAGATCGATCTAAGAAAGTGGCTCAAACCAAAGAGATTTTGTCGAAACAAGCGGTTCAGACCAGAGAGATCCTTTCAAAACAGGCTGTTAAGATCGCCAAACAAGCTGAAGAACACGAAAAGTTCATCAACAAGGTGACGCATCTTGTGGGGGTCCTCGGGTTTGGTGGCTTTTGCTTCCTCTTAGGAGCAAGACCCCAAGATATTCGATATGTGTATTGTTTGTTCTATGTAATCTTTGTTCCTCTTCGTTGGATATACTATCGGTTCAAGAAATGGCACTACTATCTTTTGGACTTTTGCTACTATGCCAATACGATCTTTTTGGTTGACCTCCTTCTTTATCCAAGGAATGAAAAGTTTTTCATGGTTTGCTTCTCATTTGCTGAGCAGGGACCATTAGCATGGGCATTGATTGTTTGGCGTTGTAGCTTGGTGTTTAGTTCTCTTGACAAAATAGTTAGTGTCCTCATACATCTTTTACCTGGGTTAGTTTTCTTCACCATTCGATGGTGGGATCCAGCCACTTTTGCAGCCATGCATCCAGAAGGAACTTCTCGCAGAGCTTCGTGGCCTTATGTAGAAGACAAATCCTACCTTTGGGTGTGGTTGTTTTGGGTGCCCTTGTTTGCTTACACCTTATGGCAGGCTTTGTATTTTCTCATTGTCAATGTTTTACGCCGACAAAGGCTCTTAAGAGATCCTGAAGTCATGACTTCTTATAGGGAACTGTCAAAGAAGGCACAGAAAGCAAACAATGTATGGTGGCGCCTAAGCGGTTTGCTTGGGGATCAAAATCGCTTGCTTATGTTTATTCTGCTTCAAGCCGTCTTTACTGTGGCAACCATGGCGCTCACAGTCCCTATCTTCTTGTCATATGAATTGCATGTAGTTTTCCAAATACTCAAGGTTTCTGCATCTGTATGGAATGGAGGGAGTTTCTTGCTAGAGGTAATGCCTCGGCAAGTGATTCTCAAGGAGAAGAAGAAATTAGAAGTTCAACCAGTGCAAACTGAGCGAGACCAATCAACGGACGATGATGGAGGGACCAATTATTCTGCCGAGGCATCCAGTCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2838

Protein Analysis

384

Amino Acids

44.75

Weight (kDa)

9.15

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35460 AT5G35460
fragaria_vesca	FvH4_1g08120
malus_domestica	MD02G1085700.v1.1 MD15G1212900.v1.1
prunus_persica	Prupe.7G204000_v2.0.a1 Prupe.7G204000_v2.0.a1
pyrus_communis	pycom02g06850 pycom15g18920
rosa_chinensis	RchiOBHm_Chr2g0094171
rosa_laevigata	RLG00000016462
rosa_multiflora	Rmu_sc0002193.1_g000001 Rmu_sc0002892.1_g000079
rosa_roxburghii	Rroxscaffold_2G00147420
rosa_rugosa	Rorug02G0041500
rosa_samantha	Rh2AG089200 Rh2BG089300 Rh2BG465000 Rh2CG091800 Rh2DG088300 Rh2DG473900 Rh5DG076200 Rh5DG406800 Rh6BG042400
rosa_wichuraiana	Rw7G037100 Rw7G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	688, 837
AccB7I	CCANNNNNTGG	1 cut(s)	579
AciI	CCGC	2 cut(s)	122, 846
AclWI	GGATC	5 cut(s)	133, 581, 594, 764, 867
AcuI	CTGAAG	2 cut(s)	198, 795
AcyI	GRCGYC	1 cut(s)	838
AdeI	CACNNNGTG	1 cut(s)	55
AfiI	CCNNNNNNNGG	3 cut(s)	579, 669, 1099
AflII	CTTAAG	1 cut(s)	763
AgsI	TTSAA	5 cut(s)	70, 147, 340, 893, 1070
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	3 cut(s)	176, 501, 635
AluI	AGCT	3 cut(s)	176, 501, 635
Alw26I	GTCTC	1 cut(s)	1083
AlwI	GGATC	5 cut(s)	133, 581, 594, 764, 867
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	641
ApeKI	GCWGC	1 cut(s)	602
AspLEI	GCGC	2 cut(s)	840, 922
AspS9I	GGNCC	3 cut(s)	223, 464, 1116
AsuHPI	GGTGA	2 cut(s)	217, 562
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	3 cut(s)	223, 464, 1116
BaeGI	GKGCMC	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	2 cut(s)	688, 837
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	2 cut(s)	573, 1103
BceAI	ACGGC	1 cut(s)	881
BciT130I	CCWGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	1083
BfaI	CTAG	1 cut(s)	1016
BfoI	RGCGCY	2 cut(s)	841, 923
BfrI	CTTAAG	1 cut(s)	763
BisI	GCNGC	1 cut(s)	603
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	3 cut(s)	223, 464, 1116
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	223, 464, 1116
BmiI	GGNNCC	6 cut(s)	224, 465, 588, 690, 839, 1117
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	4 cut(s)	220, 619, 995, 1145
BpiI	GAAGAC	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	842
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	959, 1028
Bsa29I	ATCGAT	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	864
BsaHI	GRCGYC	1 cut(s)	838
BsaI	GGTCTC	1 cut(s)	1083
BsaJI	CCNNGG	7 cut(s)	21, 226, 416, 554, 915, 1028, 1131
Bsc4I	CCNNNNNNNGG	3 cut(s)	579, 669, 1099
Bse1I	ACTGG	2 cut(s)	1073, 1140
Bse8I	GATNNNNATC	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	555
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	7 cut(s)	21, 226, 416, 554, 915, 1028, 1131
BseGI	GGATG	2 cut(s)	610, 1136
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	3 cut(s)	579, 669, 1099
BseMII	CTCAG	2 cut(s)	447, 1074
BseNI	ACTGG	2 cut(s)	1073, 1140
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	1 cut(s)	614
BshFI	GGCC	1 cut(s)	643
BshNI	GGYRCC	2 cut(s)	688, 837
BshVI	ATCGAT	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	227
BslFI	GGGAC	3 cut(s)	477, 914, 1129
BslI	CCNNNNNNNGG	3 cut(s)	579, 669, 1099
BsmAI	GTCTC	1 cut(s)	1083
BsmFI	GGGAC	3 cut(s)	477, 914, 1129
BsnI	GGCC	1 cut(s)	643
Bso31I	GGTCTC	1 cut(s)	1083
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	21, 693
Bsp143I	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
Bsp1720I	GCTNAGC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	2 cut(s)	122, 846
BspANI	GGCC	1 cut(s)	643
BspCNI	CTCAG	2 cut(s)	448, 1075
BspDI	ATCGAT	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	6 cut(s)	224, 465, 588, 690, 839, 1117
BspPI	GGATC	5 cut(s)	133, 581, 594, 764, 867
BspQI	GCTCTTC	1 cut(s)	9
BspT107I	GGYRCC	2 cut(s)	688, 837
BspTI	CTTAAG	1 cut(s)	763
BspTNI	GGTCTC	1 cut(s)	1083
BsrI	ACTGG	2 cut(s)	1073, 1140
BssECI	CCNNGG	7 cut(s)	21, 226, 416, 554, 915, 1028, 1131
BssMI	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
BssNI	GRCGYC	1 cut(s)	838
BssT1I	CCWWGG	2 cut(s)	416, 915
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	801, 907, 928
Bst6I	CTCTTC	2 cut(s)	9, 321
BstACI	GRCGYC	1 cut(s)	838
BstAFI	CTTAAG	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	717, 872
BstDEI	CTNAG	5 cut(s)	81, 253, 456, 842, 1083
BstDSI	CCRYGG	2 cut(s)	21, 915
BstF5I	GGATG	2 cut(s)	610, 1136
BstH2I	RGCGCY	2 cut(s)	841, 923
BstHHI	GCGC	2 cut(s)	840, 922
BstKTI	GATC	8 cut(s)	76, 80, 141, 165, 390, 589, 772, 862
BstMAI	GTCTC	1 cut(s)	1083
BstMBI	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 599, 818, 917, 1084
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	553
BstSLI	GKGCMC	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	3 cut(s)	138, 586, 769
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	3 cut(s)	138, 586, 769
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	643
BsuTUI	ATCGAT	1 cut(s)	76
BtgI	CCRYGG	2 cut(s)	21, 915
BtsCI	GGATG	2 cut(s)	610, 1136
BtsIMutI	CAGTG	1 cut(s)	1080
Cac8I	GCNNGC	2 cut(s)	717, 872
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	2 cut(s)	840, 922
Cfr13I	GGNCC	3 cut(s)	223, 464, 1116
ClaI	ATCGAT	1 cut(s)	76
CseI	GACGC	1 cut(s)	217
CviAII	CATG	6 cut(s)	436, 474, 607, 781, 916, 956
DdeI	CTNAG	5 cut(s)	81, 253, 456, 842, 1083
DinI	GGCGCC	1 cut(s)	839
DpnI	GATC	8 cut(s)	75, 79, 140, 164, 389, 588, 771, 861
DpnII	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	9, 321
EarI	CTCTTC	2 cut(s)	9, 321
Eco130I	CCWWGG	2 cut(s)	416, 915
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	1083
Eco47I	GGWCC	3 cut(s)	223, 464, 1116
Eco57I	CTGAAG	2 cut(s)	198, 795
Eco88I	CYCGRG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	416, 915
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	839
EheI	GGCGCC	1 cut(s)	839
ErhI	CCWWGG	2 cut(s)	416, 915
FaeI	CATG	6 cut(s)	439, 477, 610, 784, 919, 959
FaqI	GGGAC	3 cut(s)	477, 914, 1129
FatI	CATG	6 cut(s)	435, 473, 606, 780, 915, 955
FauNDI	CATATG	1 cut(s)	946
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	597, 1123
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	1 cut(s)	1016
GlaI	GCGC	2 cut(s)	839, 921
GluI	GCNGC	1 cut(s)	603
HaeII	RGCGCY	2 cut(s)	841, 923
HaeIII	GGCC	1 cut(s)	643
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	2 cut(s)	840, 922
Hin1I	GRCGYC	1 cut(s)	838
Hin1II	CATG	6 cut(s)	439, 477, 610, 784, 919, 959
Hin6I	GCGC	2 cut(s)	838, 920
HinP1I	GCGC	2 cut(s)	838, 920
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	41, 1039
HphI	GGTGA	2 cut(s)	217, 562
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	5 cut(s)	340, 518, 614, 773, 781
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	3 cut(s)	416, 611, 802
HpyCH4III	ACNGT	3 cut(s)	801, 907, 928
HpyCH4V	TGCA	5 cut(s)	602, 610, 955, 986, 1078
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 599, 818, 917, 1084
HpyF3I	CTNAG	5 cut(s)	81, 253, 456, 842, 1083
Hsp92I	GRCGYC	1 cut(s)	838
Hsp92II	CATG	6 cut(s)	439, 477, 610, 784, 919, 959
HspAI	GCGC	2 cut(s)	838, 920
KasI	GGCGCC	1 cut(s)	837
Kzo9I	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	4 cut(s)	220, 619, 995, 1145
MaeI	CTAG	1 cut(s)	1016
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	8 cut(s)	75, 79, 140, 164, 389, 588, 771, 861
MboI	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
MboII	GAAGA	8 cut(s)	26, 191, 308, 559, 665, 928, 1063, 1066
MflI	RGATCY	3 cut(s)	138, 586, 769
MhlI	GDGCHC	2 cut(s)	21, 693
MluCI	AATT	3 cut(s)	950, 1058, 1120
Mly113I	GGCGCC	1 cut(s)	838
MmeI	TCCRAC	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	612
MseI	TTAA	2 cut(s)	159, 764
MslI	CAYNNNNRTG	2 cut(s)	472, 991
MspCI	CTTAAG	1 cut(s)	763
MspR9I	CCNGG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	173, 599, 818, 917, 1084
NarI	GGCGCC	1 cut(s)	838
NcoI	CCATGG	1 cut(s)	915
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
NlaIII	CATG	6 cut(s)	439, 477, 610, 784, 919, 959
NlaIV	GGNNCC	6 cut(s)	224, 465, 588, 690, 839, 1117
NmeAIII	GCCGAG	1 cut(s)	1009
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	1 cut(s)	959
PagI	TCATGA	1 cut(s)	780
PciSI	GCTCTTC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	41, 1039
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	1 cut(s)	604
PluTI	GGCGCC	1 cut(s)	841
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	6 cut(s)	224, 465, 588, 690, 839, 1117
PspPI	GGNCC	3 cut(s)	223, 464, 1116
PspPPI	RGGWCCY	1 cut(s)	223
PsrI	GAACNNNNNNTAC	4 cut(s)	278, 294, 310, 326
PsuI	RGATCY	3 cut(s)	138, 586, 769
RseI	CAYNNNNRTG	2 cut(s)	472, 991
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	159, 764
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	8 cut(s)	73, 77, 138, 162, 387, 586, 769, 859
Sau96I	GGNCC	3 cut(s)	223, 464, 1116
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	2 cut(s)	21, 693
SfaNI	GCATC	4 cut(s)	220, 619, 995, 1145
SfoI	GGCGCC	1 cut(s)	839
SinI	GGWCC	3 cut(s)	223, 464, 1116
SmiMI	CAYNNNNRTG	2 cut(s)	472, 991
SmlI	CTYRAG	3 cut(s)	763, 974, 1043
SmoI	CTYRAG	3 cut(s)	763, 974, 1043
Sse9I	AATT	3 cut(s)	950, 1058, 1120
SsiI	CCGC	2 cut(s)	122, 846
SspDI	GGCGCC	1 cut(s)	837
SspMI	CTAG	1 cut(s)	1016
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	2 cut(s)	416, 915
TaaI	ACNGT	3 cut(s)	801, 907, 928
TaqI	TCGA	4 cut(s)	76, 113, 277, 577
TasI	AATT	3 cut(s)	950, 1058, 1120
TfiI	GAWTC	2 cut(s)	41, 1039
Tru1I	TTAA	2 cut(s)	159, 764
Tru9I	TTAA	2 cut(s)	159, 764
TscAI	CASTG	1 cut(s)	1080
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	5 cut(s)	33, 184, 424, 438, 963
TspGWI	ACGGA	1 cut(s)	1115
TspRI	CASTG	1 cut(s)	1080
Van91I	CCANNNNNTGG	1 cut(s)	579
Vha464I	CTTAAG	1 cut(s)	763
VpaK11BI	GGWCC	3 cut(s)	223, 464, 1116
XceI	RCATGY	1 cut(s)	959
XspI	CTAG	1 cut(s)	1016
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.