Rw7G039790

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006796
Physical Location & Seq
Reverse (-)
61432044 .. 61437031
4988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039790.1

Sequence Viewer

Length: 822 bp
ATGAGAAAATGGAATCTAAAGAACCTGAACCGGAAAATGCCTAATTACAACAGCTTAGAAAAGTTGAAGGCTGCTCAGACCTCACCTTACTCCTCGGCCCCATCGATTGACTCTAAAGAGATTCTTCCGCTCGCCGTCGATTCAGGTATTGGATTATTGGGTCTCACTCGATTTTGCGTTAAATTGTTTTCAATTGCTTCTGGGTATCTTTTGGTTAATTTCTTGGTTAATTTTTTTCCCCTAGACTCTGGGTATGTTTACTTATTTTTGTTTATCTTTGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGTAAGCAACAATTTCACATGGGCACTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCATGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAGAACTCTTGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTACATTGTTCAAATAGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

273

Amino Acids

31.98

Weight (kDa)

9.53

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 90 - 151 6e-14 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 130
AciI CCGC 2 cut(s) 128, 765
AclI AACGTT 1 cut(s) 660
AclWI GGATC 6 cut(s) 500, 513, 547, 683, 696, 786
AcuI CTGAAG 2 cut(s) 555, 714
AfaI GTAC 1 cut(s) 800
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 4 cut(s) 67, 192, 724, 809
AjnI CCWGG 2 cut(s) 472, 612
AluBI AGCT 4 cut(s) 54, 420, 554, 637
AluI AGCT 4 cut(s) 54, 420, 554, 637
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 6 cut(s) 500, 513, 547, 683, 696, 786
AoxI GGCC 2 cut(s) 96, 560
ApeKI GCWGC 3 cut(s) 71, 521, 634
AspLEI GCGC 2 cut(s) 733, 759
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 75
BaeGI GKGCMC 2 cut(s) 400, 612
BamHI GGATCC 2 cut(s) 505, 688
BanI GGYRCC 1 cut(s) 607
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 58, 533, 646
BccI CCATC 2 cut(s) 109, 492
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 474, 614
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 760
BfrI CTTAAG 1 cut(s) 760
BisI GCNGC 3 cut(s) 72, 522, 635
BlsI GCNGC 3 cut(s) 73, 523, 636
Bme1390I CCNGG 2 cut(s) 474, 614
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 4 cut(s) 99, 507, 609, 690
BmrFI CCNGG 2 cut(s) 474, 614
BmsI GCATC 1 cut(s) 538
Bpu10I CCTNAGC 1 cut(s) 372
Bsa29I ATCGAT 2 cut(s) 104, 787
BsaBI GATNNNNATC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 93, 332, 473, 612
BsaWI WCCGGW 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 2 cut(s) 474, 614
BseCI ATCGAT 2 cut(s) 104, 787
BseDI CCNNGG 4 cut(s) 93, 332, 473, 612
BseGI GGATG 1 cut(s) 529
BseJI GATNNNNATC 1 cut(s) 783
BseMII CTCAG 2 cut(s) 89, 363
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 2 cut(s) 400, 612
BseXI GCAGC 3 cut(s) 58, 533, 646
BshFI GGCC 2 cut(s) 98, 562
BshNI GGYRCC 1 cut(s) 607
BshVI ATCGAT 2 cut(s) 104, 787
BsiSI CCGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 98, 562
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 400, 612
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 5 cut(s) 303, 505, 539, 688, 778
BspACI CCGC 2 cut(s) 128, 765
BspANI GGCC 2 cut(s) 98, 562
BspCNI CTCAG 2 cut(s) 88, 364
BspDI ATCGAT 2 cut(s) 104, 787
BspLI GGNNCC 4 cut(s) 99, 507, 609, 690
BspPI GGATC 6 cut(s) 500, 513, 547, 683, 696, 786
BspT107I GGYRCC 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 760
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 798
BssECI CCNNGG 4 cut(s) 93, 332, 473, 612
BssMI GATC 5 cut(s) 303, 505, 539, 688, 778
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 474, 614
BstAFI CTTAAG 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 55, 75, 372
BstF5I GGATG 1 cut(s) 529
BstH2I RGCGCY 1 cut(s) 760
BstHHI GCGC 2 cut(s) 733, 759
BstKTI GATC 5 cut(s) 306, 508, 542, 691, 781
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 5 cut(s) 303, 505, 539, 688, 778
BstMWI GCNNNNNNNGC 2 cut(s) 518, 737
BstNI CCWGG 2 cut(s) 474, 614
BstSCI CCNGG 2 cut(s) 472, 612
BstSLI GKGCMC 2 cut(s) 400, 612
BstV1I GCAGC 3 cut(s) 58, 533, 646
BstX2I RGATCY 3 cut(s) 505, 539, 688
BstYI RGATCY 3 cut(s) 505, 539, 688
Bsu15I ATCGAT 2 cut(s) 104, 787
BsuRI GGCC 2 cut(s) 98, 562
BsuTUI ATCGAT 2 cut(s) 104, 787
BtsCI GGATG 1 cut(s) 529
BtsIMutI CAGTG 2 cut(s) 398, 457
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 2 cut(s) 733, 759
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 2 cut(s) 104, 787
Csp6I GTAC 1 cut(s) 799
CviAII CATG 4 cut(s) 352, 393, 526, 594
CviJI RGCY 9 cut(s) 54, 71, 98, 420, 524, 554, 562, 637, 679
CviKI_1 RGCY 9 cut(s) 54, 71, 98, 420, 524, 554, 562, 637, 679
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 3 cut(s) 55, 75, 372
DpnI GATC 5 cut(s) 305, 507, 541, 690, 780
DpnII GATC 5 cut(s) 303, 505, 539, 688, 778
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 555, 714
EcoRII CCWGG 2 cut(s) 472, 612
EcoT14I CCWWGG 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 4 cut(s) 355, 396, 529, 597
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 565, 597
FatI CATG 4 cut(s) 351, 392, 525, 593
Fnu4HI GCNGC 3 cut(s) 72, 522, 635
FokI GGATG 1 cut(s) 516
Fsp4HI GCNGC 3 cut(s) 72, 522, 635
FspBI CTAG 1 cut(s) 242
GlaI GCGC 2 cut(s) 732, 758
GluI GCNGC 3 cut(s) 72, 522, 635
HaeII RGCGCY 1 cut(s) 760
HaeIII GGCC 2 cut(s) 98, 562
HapII CCGG 1 cut(s) 31
HhaI GCGC 2 cut(s) 733, 759
Hin1II CATG 4 cut(s) 355, 396, 529, 597
Hin6I GCGC 2 cut(s) 731, 757
HinP1I GCGC 2 cut(s) 731, 757
HincII GTYRAC 2 cut(s) 316, 658
HindII GTYRAC 2 cut(s) 316, 658
HinfI GANTC 5 cut(s) 13, 110, 121, 140, 245
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 5 cut(s) 259, 316, 434, 591, 658
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 457, 533, 692, 721
Hpy8I GTNNAC 5 cut(s) 259, 316, 434, 591, 658
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 61, 329, 530, 721
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 2 cut(s) 521, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 737
HpyF3I CTNAG 3 cut(s) 55, 75, 372
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 4 cut(s) 355, 396, 529, 597
HspAI GCGC 2 cut(s) 731, 757
Kzo9I GATC 5 cut(s) 303, 505, 539, 688, 778
Lsp1109I GCAGC 3 cut(s) 58, 533, 646
LweI GCATC 1 cut(s) 538
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 660
MalI GATC 5 cut(s) 305, 507, 541, 690, 780
MbiI CCGCTC 1 cut(s) 130
MboI GATC 5 cut(s) 303, 505, 539, 688, 778
MboII GAAGA 5 cut(s) 116, 314, 478, 534, 736
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 3 cut(s) 505, 539, 688
MhlI GDGCHC 2 cut(s) 400, 612
MluCI AATT 8 cut(s) 43, 182, 192, 217, 229, 385, 443, 745
MlyI GAGTC 2 cut(s) 104, 239
MnlI CCTC 4 cut(s) 91, 103, 367, 638
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 5 cut(s) 180, 216, 228, 683, 761
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 2 cut(s) 474, 614
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 2 cut(s) 474, 614
MwoI GCNNNNNNNGC 2 cut(s) 518, 737
NdeII GATC 5 cut(s) 303, 505, 539, 688, 778
NlaIII CATG 4 cut(s) 355, 396, 529, 597
NlaIV GGNNCC 4 cut(s) 99, 507, 609, 690
NmeAIII GCCGAG 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 3 cut(s) 13, 121, 140
PkrI GCNGC 3 cut(s) 73, 523, 636
PleI GAGTC 2 cut(s) 104, 239
PpsI GAGTC 2 cut(s) 104, 239
Psp1406I AACGTT 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 472, 612
PspGI CCWGG 2 cut(s) 472, 612
PspN4I GGNNCC 4 cut(s) 99, 507, 609, 690
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 3 cut(s) 505, 539, 688
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
SaqAI TTAA 5 cut(s) 180, 216, 228, 683, 761
SatI GCNGC 3 cut(s) 72, 522, 635
Sau3AI GATC 5 cut(s) 303, 505, 539, 688, 778
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 2 cut(s) 104, 239
ScrFI CCNGG 2 cut(s) 474, 614
SduI GDGCHC 2 cut(s) 400, 612
SfaNI GCATC 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 760
SmoI CTYRAG 1 cut(s) 760
Sse9I AATT 8 cut(s) 43, 182, 192, 217, 229, 385, 443, 745
SsiI CCGC 2 cut(s) 128, 765
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 472, 612
StyI CCWWGG 1 cut(s) 332
TaiI ACGT 1 cut(s) 663
TaqI TCGA 5 cut(s) 104, 138, 169, 496, 787
TasI AATT 8 cut(s) 43, 182, 192, 217, 229, 385, 443, 745
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 3 cut(s) 13, 121, 140
Tru1I TTAA 5 cut(s) 180, 216, 228, 683, 761
Tru9I TTAA 5 cut(s) 180, 216, 228, 683, 761
TscAI CASTG 2 cut(s) 405, 457
TseI GCWGC 3 cut(s) 71, 521, 634
TspDTI ATGAA 2 cut(s) 340, 354
TspRI CASTG 2 cut(s) 405, 457
Vha464I CTTAAG 1 cut(s) 760
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.