Rh5DG076200

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006796
Physical Location & Seq
Forward (+)
6660461 .. 6662123
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG076200.1

Sequence Viewer

Length: 717 bp
ATGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGAGTTGACTGAGTTGAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGCCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTAATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCACGCATCCTGAAGGATCTTCTGCCATAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGCTGGCCCTGGTCGCATACTCCCTATGGCAGCGTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGAAGACTTCTTACAGAGAACTCTCGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCAATTGTTTATGTACATTGTTCAAGTAGTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

238

Amino Acids

27.77

Weight (kDa)

9.21

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 60 - 116 1.1e-18 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AciI CCGC 2 cut(s) 110, 660
AclI AACGTT 2 cut(s) 56, 555
AclWI GGATC 6 cut(s) 395, 408, 442, 578, 591, 681
AcuI CTGAAG 2 cut(s) 450, 609
AfaI GTAC 1 cut(s) 695
AflII CTTAAG 1 cut(s) 655
AgsI TTSAA 2 cut(s) 52, 704
AjnI CCWGG 2 cut(s) 367, 507
AluBI AGCT 3 cut(s) 74, 315, 449
AluI AGCT 3 cut(s) 74, 315, 449
AlwI GGATC 6 cut(s) 395, 408, 442, 578, 591, 681
AoxI GGCC 3 cut(s) 278, 455, 504
ApeKI GCWGC 2 cut(s) 416, 529
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspLEI GCGC 2 cut(s) 628, 654
AspS9I GGNCC 2 cut(s) 278, 505
AsuHPI GGTGA 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 295
BamHI GGATCC 2 cut(s) 400, 583
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BbsI GAAGAC 1 cut(s) 602
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 428, 541
BccI CCATC 2 cut(s) 74, 387
BciT130I CCWGG 2 cut(s) 369, 509
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 655
BfrI CTTAAG 1 cut(s) 655
BisI GCNGC 3 cut(s) 110, 417, 530
BlsI GCNGC 3 cut(s) 111, 418, 531
Bme1390I CCNGG 2 cut(s) 369, 509
BmgT120I GGNCC 2 cut(s) 278, 505
BmiI GGNNCC 3 cut(s) 279, 402, 585
BmrFI CCNGG 2 cut(s) 369, 509
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 93, 233, 368, 507
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse3DI GCAATG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 2 cut(s) 369, 509
BseDI CCNNGG 4 cut(s) 93, 233, 368, 507
BseGI GGATG 2 cut(s) 12, 424
BseJI GATNNNNATC 1 cut(s) 678
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 36, 264
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 428, 541
BshFI GGCC 3 cut(s) 280, 457, 506
BsnI GGCC 3 cut(s) 280, 457, 506
Bsp1286I GDGCHC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 31, 204, 400, 434, 583, 673
BspACI CCGC 2 cut(s) 110, 660
BspANI GGCC 3 cut(s) 280, 457, 506
BspCNI CTCAG 2 cut(s) 37, 265
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 279, 402, 585
BspPI GGATC 6 cut(s) 395, 408, 442, 578, 591, 681
BspTI CTTAAG 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 693
BssECI CCNNGG 4 cut(s) 93, 233, 368, 507
BssMI GATC 6 cut(s) 31, 204, 400, 434, 583, 673
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 369, 509
Bst6I CTCTTC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 45, 273
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 12, 424
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 2 cut(s) 628, 654
BstKTI GATC 6 cut(s) 34, 207, 403, 437, 586, 676
BstMBI GATC 6 cut(s) 31, 204, 400, 434, 583, 673
BstMWI GCNNNNNNNGC 3 cut(s) 413, 512, 632
BstNI CCWGG 2 cut(s) 369, 509
BstSCI CCNGG 2 cut(s) 367, 507
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 428, 541
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 3 cut(s) 400, 434, 583
BstXI CCANNNNNNTGG 1 cut(s) 288
BstYI RGATCY 3 cut(s) 400, 434, 583
BsuRI GGCC 3 cut(s) 280, 457, 506
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 12, 424
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 504
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 628, 654
Cfr13I GGNCC 2 cut(s) 278, 505
Csp6I GTAC 1 cut(s) 694
CviAII CATG 5 cut(s) 103, 125, 253, 288, 489
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 2 cut(s) 45, 273
DpnI GATC 6 cut(s) 33, 206, 402, 436, 585, 675
DpnII GATC 6 cut(s) 31, 204, 400, 434, 583, 673
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 450, 609
EcoRII CCWGG 2 cut(s) 367, 507
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 5 cut(s) 106, 128, 256, 291, 492
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FatI CATG 5 cut(s) 102, 124, 252, 287, 488
Fnu4HI GCNGC 3 cut(s) 110, 417, 530
FokI GGATG 2 cut(s) 19, 411
Fsp4HI GCNGC 3 cut(s) 110, 417, 530
FspBI CTAG 1 cut(s) 63
GlaI GCGC 2 cut(s) 627, 653
GluI GCNGC 3 cut(s) 110, 417, 530
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 3 cut(s) 280, 457, 506
HhaI GCGC 2 cut(s) 628, 654
Hin1II CATG 5 cut(s) 106, 128, 256, 291, 492
Hin6I GCGC 2 cut(s) 626, 652
HinP1I GCGC 2 cut(s) 626, 652
HincII GTYRAC 3 cut(s) 42, 217, 553
HindII GTYRAC 3 cut(s) 42, 217, 553
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 5 cut(s) 42, 217, 329, 486, 553
Hpy188I TCNGA 1 cut(s) 713
Hpy188III TCNNGA 7 cut(s) 35, 125, 179, 352, 428, 587, 616
Hpy8I GTNNAC 5 cut(s) 42, 217, 329, 486, 553
HpyAV CCTTC 3 cut(s) 230, 425, 616
HpyCH4IV ACGT 2 cut(s) 56, 555
HpyCH4V TGCA 2 cut(s) 21, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 512, 632
HpyF3I CTNAG 2 cut(s) 45, 273
HpySE526I ACGT 2 cut(s) 56, 555
Hsp92II CATG 5 cut(s) 106, 128, 256, 291, 492
HspAI GCGC 2 cut(s) 626, 652
Kzo9I GATC 6 cut(s) 31, 204, 400, 434, 583, 673
Lsp1109I GCAGC 2 cut(s) 428, 541
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 56, 555
MalI GATC 6 cut(s) 33, 206, 402, 436, 585, 675
MboI GATC 6 cut(s) 31, 204, 400, 434, 583, 673
MboII GAAGA 7 cut(s) 145, 184, 215, 373, 429, 607, 631
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 3 cut(s) 400, 434, 583
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 4 cut(s) 297, 338, 640, 683
MnlI CCTC 4 cut(s) 113, 121, 129, 268
MseI TTAA 2 cut(s) 578, 656
MslI CAYNNNNRTG 1 cut(s) 286
MspCI CTTAAG 1 cut(s) 655
MspR9I CCNGG 2 cut(s) 369, 509
MunI CAATTG 1 cut(s) 683
MvaI CCWGG 2 cut(s) 369, 509
MwoI GCNNNNNNNGC 3 cut(s) 413, 512, 632
NdeII GATC 6 cut(s) 31, 204, 400, 434, 583, 673
NlaIII CATG 5 cut(s) 106, 128, 256, 291, 492
NlaIV GGNNCC 3 cut(s) 279, 402, 585
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 111, 418, 531
Psp1406I AACGTT 2 cut(s) 56, 555
Psp6I CCWGG 2 cut(s) 367, 507
PspGI CCWGG 2 cut(s) 367, 507
PspN4I GGNNCC 3 cut(s) 279, 402, 585
PspPI GGNCC 2 cut(s) 278, 505
PsuI RGATCY 3 cut(s) 400, 434, 583
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 2 cut(s) 578, 656
SatI GCNGC 3 cut(s) 110, 417, 530
Sau3AI GATC 6 cut(s) 31, 204, 400, 434, 583, 673
Sau96I GGNCC 2 cut(s) 278, 505
ScrFI CCNGG 2 cut(s) 369, 509
SduI GDGCHC 1 cut(s) 295
SetI ASST 9 cut(s) 59, 76, 124, 132, 222, 317, 370, 451, 558
SfaNI GCATC 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 2 cut(s) 35, 655
SmoI CTYRAG 2 cut(s) 35, 655
Sse9I AATT 4 cut(s) 297, 338, 640, 683
SsiI CCGC 2 cut(s) 110, 660
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 367, 507
StyI CCWWGG 1 cut(s) 233
TaiI ACGT 2 cut(s) 59, 558
TaqI TCGA 3 cut(s) 170, 391, 617
TasI AATT 4 cut(s) 297, 338, 640, 683
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 578, 656
Tru9I TTAA 2 cut(s) 578, 656
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 416, 529
TspDTI ATGAA 3 cut(s) 119, 241, 255
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 352
Vha464I CTTAAG 1 cut(s) 655
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.