MD15G1212900.v1.1

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006796
Physical Location & Seq
Reverse (-)
17096703 .. 17099999
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1212900.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGAACTTTTTTTTGTTGTGCGGAAGAGGAGAGACCGTTCCAATTAATAAAGGTTCTAACAGATTTTGTGTTGTTCTGAAGCGCACCACCTTCCTTCTTTCCCTCCCCTTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTAAAACTCTGTTTCTCAAAAGCAAAAATGTCCAGCGGCGACGACCCTATGGAGGAAACAAATGGGGATTCGTTTCACCAAGCAATGAGGCAACGGTTGAAAGATCGGTCAAAGAAAGTTGCTCAGACCAAAGAGATTTTGTCGAAACAAGCGGTTCAGACCAGAGAGATCCTTTCAAAGCAGGCTGTGAAGATCGCCAAACAAGCTGAGGAGCATGAAAAGTTCATCAACAAGGTGACGCATTTTGTGGGGGTTCTCAGTTTCGGTGGATTTTGCTTCCTCTTAGGAGCAAGACCGCAAGATACGCGATATGTGTATTGCTTGTTCTATTTCATCTTTGTTCCTCTTCGTTGGATATACTATCGGTTCAAGAAATGGCATTACTACCTTTTGGACTTTTGCTACTATGCCAACACGATATTTTTGGTTGACCTGCTTCTTTATCCAAGGAACGAAAAGTTTTTCATGGTTTGCTTCTCATTTGCTGAGGGGCCGTTAGCATGGGCATTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCTCTTGACAAACTTGTTAGTGTCCTTATACATCTTTTACCCGGGTTAGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACTTTTGCAGCGATGCATCCGGAAGGAACTTCTCGCAGAGCTTCATGGCCTTATGTAGAAAACAAATCCTACCTTTGGATATGGCTCTTTTGGGTGCCCTTGTTTGCTTACACCCTTTGGCAGGCTTTGTATTTTCTCATTGTCAATGTTTTACGTCGACAAAGGCTGTTGAGAGATCCCGAAGTCATGACTTCTTACAGGGAGCTCTCAAAGAAGGCACAGAAAGCAAACAATGTATGGTGGCGCTTGAGCGGTTTGCTTGGGGATCAGAATCGCTTGCTCATGTACACTCTACTCCAAGCCGTATTTACTGTGGCAACAATGGCACTCACGGTCCCTATCTTCTTGTCATATGAACTGCACTTTATCTTCCAAATTCTCAAGGTTTCCGCTTCTGTGTGGAACGGAGGTAGTTTCTTGCTGGAGGTGATGCCGAGGCAAGTGATTCTCAAGGAGAAGAAGAAATCGGAAGTGCAGCCAACAGAAACTCGGGAAGATCAACCATCGGATTATGATCAAAGGACGCACAATTCAGTCGAGGCATCACCAAGTCCTCCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

441

Amino Acids

51.46

Weight (kDa)

9.53

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 124 - 233 4.9e-36 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 853
AccBSI CCGCTC 1 cut(s) 1011
AccI GTMKAC 1 cut(s) 916
AccII CGCG 1 cut(s) 445
AccIII TCCGGA 1 cut(s) 778
AciI CCGC 6 cut(s) 21, 174, 290, 434, 1011, 1149
AclWI GGATC 5 cut(s) 301, 746, 759, 929, 1032
AcsI RAATTY 1 cut(s) 1134
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 1046
AfiI CCNNNNNNNGG 3 cut(s) 190, 834, 880
AgsI TTSAA 3 cut(s) 238, 315, 508
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 4 cut(s) 344, 666, 800, 964
AluI AGCT 4 cut(s) 344, 666, 800, 964
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 5 cut(s) 301, 746, 759, 929, 1032
Ama87I CYCGRG 2 cut(s) 719, 1248
Aor13HI TCCGGA 1 cut(s) 778
AoxI GGCC 2 cut(s) 629, 806
ApeKI GCWGC 2 cut(s) 767, 1234
ApoI RAATTY 1 cut(s) 1134
AseI ATTAAT 1 cut(s) 45
AspLEI GCGC 2 cut(s) 84, 1005
AspS9I GGNCC 2 cut(s) 629, 1093
AsuC2I CCSGG 2 cut(s) 720, 721
AsuHPI GGTGA 4 cut(s) 206, 385, 1198, 1296
AvaI CYCGRG 2 cut(s) 719, 1248
AvaII GGWCC 1 cut(s) 1093
BaeGI GKGCMC 1 cut(s) 858
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 966
BbvCI CCTCAGC 2 cut(s) 345, 624
BbvI GCAGC 2 cut(s) 779, 1246
BccI CCATC 2 cut(s) 738, 1270
BceAI ACGGC 2 cut(s) 616, 1046
BclI TGATCA 1 cut(s) 1273
BcnI CCSGG 2 cut(s) 720, 721
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 1321
BfoI RGCGCY 1 cut(s) 1006
BfuAI ACCTGC 1 cut(s) 579
BisI GCNGC 3 cut(s) 175, 768, 1235
BlsI GCNGC 3 cut(s) 176, 769, 1236
Bme1390I CCNGG 2 cut(s) 720, 721
Bme18I GGWCC 1 cut(s) 1093
BmeT110I CYCGRG 2 cut(s) 719, 1248
BmgT120I GGNCC 2 cut(s) 629, 1093
BmiI GGNNCC 4 cut(s) 630, 753, 855, 1095
BmrFI CCNGG 2 cut(s) 720, 721
BmsI GCATC 4 cut(s) 762, 784, 1179, 1310
BpmI CTGGAG 1 cut(s) 1202
Bpu10I CCTNAGC 2 cut(s) 345, 624
BpuEI CTTGAG 3 cut(s) 1027, 1124, 1193
BpuMI CCSGG 2 cut(s) 720, 721
BsaBI GATNNNNATC 2 cut(s) 1029, 1272
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 584, 719, 1193
BsaWI WCCGGW 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 834, 880
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 2 cut(s) 1029, 1272
BseAI TCCGGA 1 cut(s) 778
BseDI CCNNGG 3 cut(s) 584, 719, 1193
BseGI GGATG 1 cut(s) 775
BseJI GATNNNNATC 2 cut(s) 1029, 1272
BseLI CCNNNNNNNGG 3 cut(s) 190, 834, 880
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 4 cut(s) 275, 336, 409, 615
BseRI GAGGAG 2 cut(s) 42, 362
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 2 cut(s) 779, 1246
BsgI GTGCAG 2 cut(s) 1103, 1253
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 631, 808
BshNI GGYRCC 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 2 cut(s) 719, 1248
BsiSI CCGG 2 cut(s) 720, 779
BslFI GGGAC 1 cut(s) 1079
BslI CCNNNNNNNGG 3 cut(s) 190, 834, 880
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 1079
BsnI GGCC 2 cut(s) 631, 808
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 2 cut(s) 719, 1248
Bsp1286I GDGCHC 2 cut(s) 858, 966
Bsp13I TCCGGA 1 cut(s) 778
Bsp1407I TGTACA 1 cut(s) 1044
Bsp143I GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
BspACI CCGC 6 cut(s) 21, 174, 290, 434, 1011, 1149
BspANI GGCC 2 cut(s) 631, 808
BspCNI CTCAG 4 cut(s) 274, 337, 408, 616
BspEI TCCGGA 1 cut(s) 778
BspFNI CGCG 1 cut(s) 445
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 4 cut(s) 630, 753, 855, 1095
BspMI ACCTGC 1 cut(s) 579
BspPI GGATC 5 cut(s) 301, 746, 759, 929, 1032
BspT107I GGYRCC 1 cut(s) 853
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 1011
BsrDI GCAATG 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 1044
BssECI CCNNGG 3 cut(s) 584, 719, 1193
BssMI GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
BssT1I CCWWGG 1 cut(s) 584
Bst4CI ACNGT 4 cut(s) 37, 234, 1072, 1093
Bst6I CTCTTC 2 cut(s) 19, 489
BstAPI GCANNNNNTGC 1 cut(s) 764
BstAUI TGTACA 1 cut(s) 1044
BstC8I GCNNGC 3 cut(s) 321, 882, 1037
BstDEI CTNAG 5 cut(s) 261, 345, 395, 421, 624
BstENI CCTNNNNNAGG 1 cut(s) 878
BstF5I GGATG 1 cut(s) 775
BstFNI CGCG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 1006
BstHHI GCGC 2 cut(s) 84, 1005
BstKTI GATC 8 cut(s) 244, 309, 333, 754, 937, 1027, 1258, 1276
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 341, 442, 764, 983, 1082
BstSCI CCNGG 2 cut(s) 718, 719
BstSLI GKGCMC 1 cut(s) 858
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 779, 1246
BstX2I RGATCY 3 cut(s) 306, 751, 934
BstYI RGATCY 3 cut(s) 306, 751, 934
BsuRI GGCC 2 cut(s) 631, 808
BtgZI GCGATG 1 cut(s) 785
BtsCI GGATG 1 cut(s) 775
BveI ACCTGC 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 321, 882, 1037
CciI TCATGA 1 cut(s) 945
CfoI GCGC 2 cut(s) 84, 1005
Cfr13I GGNCC 2 cut(s) 629, 1093
Cfr9I CCCGGG 1 cut(s) 719
CseI GACGC 2 cut(s) 385, 1291
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 6 cut(s) 353, 604, 639, 804, 946, 1042
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 5 cut(s) 261, 345, 395, 421, 624
DpnI GATC 8 cut(s) 243, 308, 332, 753, 936, 1026, 1257, 1275
DpnII GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
Eam1104I CTCTTC 2 cut(s) 19, 489
EarI CTCTTC 2 cut(s) 19, 489
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 1 cut(s) 584
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 1093
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 719, 1248
EcoICRI GAGCTC 1 cut(s) 964
EcoNI CCTNNNNNAGG 1 cut(s) 878
EcoT14I CCWWGG 1 cut(s) 584
EcoT22I ATGCAT 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 584
FaeI CATG 6 cut(s) 356, 607, 642, 807, 949, 1045
FaqI GGGAC 1 cut(s) 1079
FatI CATG 6 cut(s) 352, 603, 638, 803, 945, 1041
FauNDI CATATG 1 cut(s) 1111
FbaI TGATCA 1 cut(s) 1273
FblI GTMKAC 1 cut(s) 916
Fnu4HI GCNGC 3 cut(s) 175, 768, 1235
FokI GGATG 1 cut(s) 762
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 175, 768, 1235
FspBI CTAG 1 cut(s) 1321
GlaI GCGC 2 cut(s) 83, 1004
GluI GCNGC 3 cut(s) 175, 768, 1235
GsuI CTGGAG 1 cut(s) 1202
HaeII RGCGCY 1 cut(s) 1006
HaeIII GGCC 2 cut(s) 631, 808
HapII CCGG 2 cut(s) 720, 779
HgaI GACGC 2 cut(s) 385, 1291
HhaI GCGC 2 cut(s) 84, 1005
Hin1II CATG 6 cut(s) 356, 607, 642, 807, 949, 1045
Hin6I GCGC 2 cut(s) 82, 1003
HinP1I GCGC 2 cut(s) 82, 1003
HincII GTYRAC 2 cut(s) 568, 917
HindII GTYRAC 2 cut(s) 568, 917
HinfI GANTC 3 cut(s) 206, 1030, 1204
HpaII CCGG 2 cut(s) 720, 779
HphI GGTGA 4 cut(s) 206, 385, 1198, 1296
Hpy166II GTNNAC 3 cut(s) 568, 917, 1047
Hpy188I TCNGA 7 cut(s) 78, 264, 297, 1029, 1228, 1267, 1317
Hpy188III TCNNGA 6 cut(s) 508, 683, 779, 938, 946, 1250
Hpy8I GTNNAC 3 cut(s) 568, 917, 1047
Hpy99I CGWCG 2 cut(s) 182, 918
HpyAV CCTTC 5 cut(s) 100, 104, 118, 776, 967
HpyCH4III ACNGT 4 cut(s) 37, 234, 1072, 1093
HpyCH4IV ACGT 1 cut(s) 913
HpyCH4V TGCA 4 cut(s) 767, 775, 1120, 1234
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 442, 764, 983, 1082
HpyF3I CTNAG 5 cut(s) 261, 345, 395, 421, 624
HpySE526I ACGT 1 cut(s) 913
Hsp92II CATG 6 cut(s) 356, 607, 642, 807, 949, 1045
HspAI GCGC 2 cut(s) 82, 1003
Kpn2I TCCGGA 1 cut(s) 778
Ksp22I TGATCA 1 cut(s) 1273
Kzo9I GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
LmnI GCTCC 3 cut(s) 349, 425, 961
Lsp1109I GCAGC 2 cut(s) 779, 1246
LweI GCATC 4 cut(s) 762, 784, 1179, 1310
MaeI CTAG 1 cut(s) 1321
MaeII ACGT 1 cut(s) 913
MaeIII GTNAC 1 cut(s) 373
MalI GATC 8 cut(s) 243, 308, 332, 753, 936, 1026, 1257, 1275
MbiI CCGCTC 1 cut(s) 1011
MboI GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
MboII GAAGA 9 cut(s) 36, 340, 476, 724, 1093, 1120, 1228, 1231, 1265
MflI RGATCY 3 cut(s) 306, 751, 934
MhlI GDGCHC 2 cut(s) 858, 966
MluCI AATT 3 cut(s) 42, 1134, 1288
MmeI TCCRAC 1 cut(s) 470
Mph1103I ATGCAT 1 cut(s) 777
MroI TCCGGA 1 cut(s) 778
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 2 cut(s) 720, 779
MspR9I CCNGG 2 cut(s) 720, 721
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 5 cut(s) 341, 442, 764, 983, 1082
NciI CCSGG 2 cut(s) 720, 721
NdeI CATATG 1 cut(s) 1111
NdeII GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
NlaIII CATG 6 cut(s) 356, 607, 642, 807, 949, 1045
NlaIV GGNNCC 4 cut(s) 630, 753, 855, 1095
NmeAIII GCCGAG 1 cut(s) 1218
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 777
PagI TCATGA 1 cut(s) 945
PfeI GAWTC 3 cut(s) 206, 1030, 1204
PkrI GCNGC 3 cut(s) 176, 769, 1236
PshBI ATTAAT 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 966
PspN4I GGNNCC 4 cut(s) 630, 753, 855, 1095
PspPI GGNCC 2 cut(s) 629, 1093
PsrI GAACNNNNNNTAC 2 cut(s) 446, 478
PsuI RGATCY 3 cut(s) 306, 751, 934
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
SacI GAGCTC 1 cut(s) 966
SalI GTCGAC 1 cut(s) 915
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 3 cut(s) 175, 768, 1235
Sau3AI GATC 8 cut(s) 241, 306, 330, 751, 934, 1024, 1255, 1273
Sau96I GGNCC 2 cut(s) 629, 1093
ScrFI CCNGG 2 cut(s) 720, 721
SduI GDGCHC 2 cut(s) 858, 966
SfaNI GCATC 4 cut(s) 762, 784, 1179, 1310
SinI GGWCC 1 cut(s) 1093
SmaI CCCGGG 1 cut(s) 721
SmlI CTYRAG 3 cut(s) 1006, 1139, 1208
SmoI CTYRAG 3 cut(s) 1006, 1139, 1208
Sse9I AATT 3 cut(s) 42, 1134, 1288
SsiI CCGC 6 cut(s) 21, 174, 290, 434, 1011, 1149
SspMI CTAG 1 cut(s) 1321
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 718, 719
StyI CCWWGG 1 cut(s) 584
TaaI ACNGT 4 cut(s) 37, 234, 1072, 1093
TaiI ACGT 1 cut(s) 916
TaqI TCGA 4 cut(s) 281, 742, 916, 1296
TaqII GACCGA 1 cut(s) 234
TasI AATT 3 cut(s) 42, 1134, 1288
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 3 cut(s) 206, 1030, 1204
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 767, 1234
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 7 cut(s) 17, 352, 369, 460, 592, 792, 1128
TspGWI ACGGA 1 cut(s) 1179
TspMI CCCGGG 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 1093
VspI ATTAAT 1 cut(s) 45
XagI CCTNNNNNAGG 1 cut(s) 878
XapI RAATTY 1 cut(s) 1134
XmaI CCCGGG 1 cut(s) 719
XmiI GTMKAC 1 cut(s) 916
XspI CTAG 1 cut(s) 1321
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.