Rroxscaffold_2G00147420

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006796
Physical Location & Seq
Forward (+)
85252129 .. 85255362
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147420.1

Sequence Viewer

Length: 1218 bp
ATGTCTAATTGCGACGAACCCATGGAGGAGTACGCGGAGCCCGTCGAAGAAACTAATGGTCATTCGTTTTACAGAGTGAAACAACGGTTAAAAGATCGATCTAAGAAAGTGGCGCAAACGAAAGAGATTTTGTCTAAGCAAGCGGTTCAGACCAAGGAGATCCTGTCAAAACAGGCTGTGAAGATCGCTAAACAAGCTGAAGAACATGAAAAGTTCATCAATAAGGTGACGCATCTTGTTGGGGTGCTTGGGTTTGGTAGCTTTTGCTTTCTGTTAGGAGCCAGACCTCAAGATACTCGATATGTATATTGTTTGTTCTATTTCATCTTTGTGCCTCTTCGTTGGATATACTATCGGTACAAGAAATGGCATTACTACCTCTTGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACCATTCGATGGTGGGATCCAGCAACATTTGCAGCCATGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTGCGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAGAACTCTCGAAGAAGGCACAAAAAGCAAACAATTTGTGGTGGCGCTTAAGTGGTTTACTTGGGGATCAAAATCGATTGTTTATGTACATTGTGCTCCAAGCCATATTTACTGTGGCTACCATGGCACTCACAGTCCCTATCTTCTTGTCATATGAATTACATGTAGTTTTCCAGATCCTCAAGGTCTCTGCATCTGTTTGGAATGGAGGAAGCTTTTTACTTGAGGTAATGCCCAGACAAGTGATTCTCAAGGAGAAGAAGAAGAAAGCAGAAGTACAACCAACAGAAACACAGGTAGACCAAACCTTAGAAGTGCAGCCAATACAAACGCAGCTAGATCAATCCTTAAACCATGACGCAGCTGCCAATAATTCTGTTGAAATTGTTGAGGCTTCCCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

405

Amino Acids

47.35

Weight (kDa)

8.99

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 75 - 184 3.7e-36 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 706
AccB7I CCANNNNNTGG 1 cut(s) 597
AccI GTMKAC 1 cut(s) 1110
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 35, 143
AclI AACGTT 1 cut(s) 759
AclWI GGATC 8 cut(s) 154, 599, 612, 646, 782, 795, 885, 982
AcuI CTGAAG 3 cut(s) 219, 654, 813
AfaI GTAC 4 cut(s) 32, 359, 899, 1089
AfiI CCNNNNNNNGG 1 cut(s) 597
AflII CTTAAG 1 cut(s) 859
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 1 cut(s) 1193
AjnI CCWGG 2 cut(s) 571, 711
AluBI AGCT 8 cut(s) 197, 261, 519, 653, 736, 1026, 1147, 1175
AluI AGCT 8 cut(s) 197, 261, 519, 653, 736, 1026, 1147, 1175
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 1 cut(s) 1003
AlwI GGATC 8 cut(s) 154, 599, 612, 646, 782, 795, 885, 982
AoxI GGCC 2 cut(s) 482, 659
ApeKI GCWGC 6 cut(s) 620, 733, 1129, 1144, 1172, 1175
AspLEI GCGC 3 cut(s) 115, 768, 858
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 238, 580
BaeGI GKGCMC 2 cut(s) 499, 711
BamHI GGATCC 2 cut(s) 604, 787
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 909
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
BccI CCATC 1 cut(s) 591
BciT130I CCWGG 2 cut(s) 573, 713
BcoDI GTCTC 1 cut(s) 1003
BfaI CTAG 1 cut(s) 1148
BfoI RGCGCY 1 cut(s) 859
BfrI CTTAAG 1 cut(s) 859
BisI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
BlsI GCNGC 6 cut(s) 622, 735, 1131, 1146, 1174, 1177
Bme1390I CCNGG 2 cut(s) 573, 713
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 6 cut(s) 39, 280, 483, 606, 708, 789
BmrFI CCNGG 2 cut(s) 573, 713
BmsI GCATC 3 cut(s) 241, 637, 1013
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 4 cut(s) 273, 977, 1046, 1055
Bsa29I ATCGAT 2 cut(s) 97, 886
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 1003
BsaJI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 597
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 573, 713
BseCI ATCGAT 2 cut(s) 97, 886
BseDI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 499, 711
BseXI GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
BsgI GTGCAG 1 cut(s) 1148
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 484, 661
BshNI GGYRCC 1 cut(s) 706
BshVI ATCGAT 2 cut(s) 97, 886
BsiHKAI GWGCWC 1 cut(s) 909
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 1 cut(s) 597
BsmAI GTCTC 1 cut(s) 1003
BsmFI GGGAC 1 cut(s) 932
BsnI GGCC 2 cut(s) 484, 661
Bso31I GGTCTC 1 cut(s) 1003
Bsp1286I GDGCHC 4 cut(s) 42, 499, 711, 909
Bsp1407I TGTACA 1 cut(s) 897
Bsp19I CCATGG 2 cut(s) 21, 933
BspACI CCGC 2 cut(s) 35, 143
BspANI GGCC 2 cut(s) 484, 661
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 2 cut(s) 97, 886
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 6 cut(s) 39, 280, 483, 606, 708, 789
BspPI GGATC 8 cut(s) 154, 599, 612, 646, 782, 795, 885, 982
BspT107I GGYRCC 1 cut(s) 706
BspTI CTTAAG 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 1003
BsrGI TGTACA 1 cut(s) 897
BssECI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BssT1I CCWWGG 4 cut(s) 21, 153, 437, 933
Bst2UI CCWGG 2 cut(s) 573, 713
Bst4CI ACNGT 3 cut(s) 87, 925, 946
Bst6I CTCTTC 1 cut(s) 342
BstAFI CTTAAG 1 cut(s) 859
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 897
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 4 cut(s) 102, 135, 477, 1120
BstDSI CCRYGG 2 cut(s) 21, 933
BstF5I GGATG 1 cut(s) 628
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 3 cut(s) 115, 768, 858
BstMAI GTCTC 1 cut(s) 1003
BstMWI GCNNNNNNNGC 4 cut(s) 194, 617, 836, 935
BstNI CCWGG 2 cut(s) 573, 713
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 2 cut(s) 571, 711
BstSLI GKGCMC 2 cut(s) 499, 711
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
BstX2I RGATCY 5 cut(s) 159, 604, 638, 787, 987
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 5 cut(s) 159, 604, 638, 787, 987
Bsu15I ATCGAT 2 cut(s) 97, 886
BsuRI GGCC 2 cut(s) 484, 661
BsuTUI ATCGAT 2 cut(s) 97, 886
BtgI CCRYGG 2 cut(s) 21, 933
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 2 cut(s) 497, 556
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 3 cut(s) 115, 768, 858
Cfr13I GGNCC 1 cut(s) 482
ClaI ATCGAT 2 cut(s) 97, 886
CseI GACGC 2 cut(s) 238, 1178
Csp6I GTAC 4 cut(s) 31, 358, 898, 1088
CviAII CATG 9 cut(s) 22, 206, 457, 492, 625, 693, 934, 974, 1166
CviQI GTAC 4 cut(s) 31, 358, 898, 1088
DdeI CTNAG 4 cut(s) 102, 135, 477, 1120
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 4 cut(s) 21, 153, 437, 933
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 1003
Eco57I CTGAAG 3 cut(s) 219, 654, 813
EcoRII CCWGG 2 cut(s) 571, 711
EcoT14I CCWWGG 4 cut(s) 21, 153, 437, 933
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 4 cut(s) 21, 153, 437, 933
FaeI CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FaqI GGGAC 1 cut(s) 932
FatI CATG 9 cut(s) 21, 205, 456, 491, 624, 692, 933, 973, 1165
FauNDI CATATG 1 cut(s) 964
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
FokI GGATG 1 cut(s) 615
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
FspBI CTAG 1 cut(s) 1148
GlaI GCGC 3 cut(s) 114, 767, 857
GluI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
HaeII RGCGCY 1 cut(s) 859
HaeIII GGCC 2 cut(s) 484, 661
HgaI GACGC 2 cut(s) 238, 1178
HhaI GCGC 3 cut(s) 115, 768, 858
Hin1II CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
Hin6I GCGC 3 cut(s) 113, 766, 856
HinP1I GCGC 3 cut(s) 113, 766, 856
HincII GTYRAC 2 cut(s) 421, 757
HindII GTYRAC 2 cut(s) 421, 757
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 1 cut(s) 1057
HphI GGTGA 2 cut(s) 238, 580
Hpy166II GTNNAC 6 cut(s) 421, 533, 690, 757, 869, 1111
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 6 cut(s) 290, 556, 632, 791, 820, 985
Hpy8I GTNNAC 6 cut(s) 421, 533, 690, 757, 869, 1111
Hpy99I CGWCG 2 cut(s) 17, 47
HpyAV CCTTC 3 cut(s) 434, 629, 820
HpyCH4III ACNGT 3 cut(s) 87, 925, 946
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 4 cut(s) 620, 628, 1004, 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 617, 836, 935
HpyF3I CTNAG 4 cut(s) 102, 135, 477, 1120
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
HspAI GCGC 3 cut(s) 113, 766, 856
LmnI GCTCC 3 cut(s) 37, 278, 912
Lsp1109I GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
LweI GCATC 3 cut(s) 241, 637, 1013
MaeI CTAG 1 cut(s) 1148
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 1 cut(s) 226
MflI RGATCY 5 cut(s) 159, 604, 638, 787, 987
MhlI GDGCHC 4 cut(s) 42, 499, 711, 909
MluCI AATT 6 cut(s) 7, 542, 844, 968, 1183, 1194
MmeI TCCRAC 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 630
MseI TTAA 4 cut(s) 89, 782, 860, 1160
MslI CAYNNNNRTG 2 cut(s) 329, 490
MspA1I CMGCKG 1 cut(s) 1175
MspCI CTTAAG 1 cut(s) 859
MspR9I CCNGG 2 cut(s) 573, 713
MvaI CCWGG 2 cut(s) 573, 713
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 194, 617, 836, 935
NcoI CCATGG 2 cut(s) 21, 933
NdeI CATATG 1 cut(s) 964
NlaIII CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
NlaIV GGNNCC 6 cut(s) 39, 280, 483, 606, 708, 789
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 1 cut(s) 977
PciI ACATGT 1 cut(s) 973
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 1057
PflMI CCANNNNNTGG 1 cut(s) 597
PkrI GCNGC 6 cut(s) 622, 735, 1131, 1146, 1174, 1177
PscI ACATGT 1 cut(s) 973
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 571, 711
PspGI CCWGG 2 cut(s) 571, 711
PspN4I GGNNCC 6 cut(s) 39, 280, 483, 606, 708, 789
PspPI GGNCC 1 cut(s) 482
PsuI RGATCY 5 cut(s) 159, 604, 638, 787, 987
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 4 cut(s) 32, 359, 899, 1089
RsaNI GTAC 4 cut(s) 31, 358, 898, 1088
RseI CAYNNNNRTG 2 cut(s) 329, 490
SaqAI TTAA 4 cut(s) 89, 782, 860, 1160
SatI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
Sau96I GGNCC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 573, 713
SduI GDGCHC 4 cut(s) 42, 499, 711, 909
SfaNI GCATC 3 cut(s) 241, 637, 1013
SmiMI CAYNNNNRTG 2 cut(s) 329, 490
SmlI CTYRAG 5 cut(s) 288, 859, 992, 1034, 1061
SmoI CTYRAG 5 cut(s) 288, 859, 992, 1034, 1061
Sse9I AATT 6 cut(s) 7, 542, 844, 968, 1183, 1194
SsiI CCGC 2 cut(s) 35, 143
SspMI CTAG 1 cut(s) 1148
StyD4I CCNGG 2 cut(s) 571, 711
StyI CCWWGG 4 cut(s) 21, 153, 437, 933
TaaI ACNGT 3 cut(s) 87, 925, 946
TaiI ACGT 1 cut(s) 762
TaqI TCGA 6 cut(s) 45, 97, 298, 595, 821, 886
TasI AATT 6 cut(s) 7, 542, 844, 968, 1183, 1194
TatI WGTACW 2 cut(s) 897, 1087
TfiI GAWTC 1 cut(s) 1057
Tru1I TTAA 4 cut(s) 89, 782, 860, 1160
Tru9I TTAA 4 cut(s) 89, 782, 860, 1160
TscAI CASTG 2 cut(s) 504, 556
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 6 cut(s) 620, 733, 1129, 1144, 1172, 1175
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 6 cut(s) 205, 222, 313, 445, 459, 981
TspRI CASTG 2 cut(s) 504, 556
Van91I CCANNNNNTGG 1 cut(s) 597
Vha464I CTTAAG 1 cut(s) 859
XceI RCATGY 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 1110
XspI CTAG 1 cut(s) 1148
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.