Rh5DG406800

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006796
Physical Location & Seq
Reverse (-)
64279191 .. 64281664
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG406800.1

Sequence Viewer

Length: 705 bp
ATGATGCAGTCCATGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCACCATGGAAGATAAGACCTAACATTCAAGACAAGACTCGCCGTCGATTAAGGTTTGTTGAGTGGATGGATTGTTGCTATTCCGGGACTGAAATTACTCTCAAGATTTCCCCTAGACTCCGGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTAATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCACGCATCCTGAAGGATCTTCTGCCATAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGCTGGCCCTGGTCGCATACTCCCTATGGCAGCGTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGAAGACTTCTTACAGAGAACTCTCGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCAATTGTTTATGTACATTGTTCAAGTAGTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

234

Amino Acids

27.75

Weight (kDa)

9.71

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 55 - 112 6e-19 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AciI CCGC 2 cut(s) 25, 648
AclI AACGTT 1 cut(s) 543
AclWI GGATC 6 cut(s) 383, 396, 430, 566, 579, 669
AcuI CTGAAG 2 cut(s) 438, 597
AfaI GTAC 1 cut(s) 683
AflII CTTAAG 1 cut(s) 643
AgsI TTSAA 2 cut(s) 74, 692
AhdI GACNNNNNGTC 1 cut(s) 87
AjnI CCWGG 2 cut(s) 355, 495
AluBI AGCT 3 cut(s) 22, 303, 437
AluI AGCT 3 cut(s) 22, 303, 437
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 6 cut(s) 383, 396, 430, 566, 579, 669
AoxI GGCC 3 cut(s) 266, 443, 492
ApeKI GCWGC 2 cut(s) 404, 517
AspLEI GCGC 2 cut(s) 616, 642
AspS9I GGNCC 2 cut(s) 266, 493
AsuC2I CCSGG 2 cut(s) 130, 167
BaeGI GKGCMC 1 cut(s) 283
BamHI GGATCC 2 cut(s) 388, 571
BanII GRGCYC 2 cut(s) 24, 47
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 416, 529
BccI CCATC 2 cut(s) 106, 375
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 357, 497
BcnI CCSGG 2 cut(s) 130, 167
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 643
BfrI CTTAAG 1 cut(s) 643
BisI GCNGC 2 cut(s) 405, 518
BlsI GCNGC 2 cut(s) 406, 519
Bme1390I CCNGG 4 cut(s) 130, 167, 357, 497
BmeRI GACNNNNNGTC 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 266, 493
BmiI GGNNCC 3 cut(s) 267, 390, 573
BmrFI CCNGG 4 cut(s) 130, 167, 357, 497
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 130, 167
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 4 cut(s) 50, 221, 356, 495
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 2 cut(s) 357, 497
BseDI CCNNGG 4 cut(s) 50, 221, 356, 495
BseGI GGATG 2 cut(s) 117, 412
BseJI GATNNNNATC 1 cut(s) 666
BseMII CTCAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 2 cut(s) 416, 529
BshFI GGCC 3 cut(s) 268, 445, 494
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 3 cut(s) 17, 129, 166
BslFI GGGAC 2 cut(s) 145, 182
BsmFI GGGAC 2 cut(s) 145, 182
BsnI GGCC 3 cut(s) 268, 445, 494
Bsp1286I GDGCHC 3 cut(s) 24, 47, 283
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 5 cut(s) 192, 388, 422, 571, 661
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 2 cut(s) 25, 648
BspANI GGCC 3 cut(s) 268, 445, 494
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 267, 390, 573
BspPI GGATC 6 cut(s) 383, 396, 430, 566, 579, 669
BspTI CTTAAG 1 cut(s) 643
BsrGI TGTACA 1 cut(s) 681
BssECI CCNNGG 4 cut(s) 50, 221, 356, 495
BssMI GATC 5 cut(s) 192, 388, 422, 571, 661
BssT1I CCWWGG 2 cut(s) 50, 221
Bst2UI CCWGG 2 cut(s) 357, 497
BstAFI CTTAAG 1 cut(s) 643
BstAPI GCANNNNNTGC 2 cut(s) 13, 401
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 117, 412
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 2 cut(s) 616, 642
BstKTI GATC 5 cut(s) 195, 391, 425, 574, 664
BstMBI GATC 5 cut(s) 192, 388, 422, 571, 661
BstMWI GCNNNNNNNGC 4 cut(s) 13, 401, 500, 620
BstNI CCWGG 2 cut(s) 357, 497
BstSCI CCNGG 4 cut(s) 128, 165, 355, 495
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 416, 529
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 3 cut(s) 388, 422, 571
BstXI CCANNNNNNTGG 1 cut(s) 276
BstYI RGATCY 3 cut(s) 388, 422, 571
BsuRI GGCC 3 cut(s) 268, 445, 494
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 117, 412
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 492
CfoI GCGC 2 cut(s) 616, 642
Cfr13I GGNCC 2 cut(s) 266, 493
Csp6I GTAC 1 cut(s) 682
CviAII CATG 5 cut(s) 13, 51, 241, 276, 477
CviJI RGCY 9 cut(s) 22, 45, 268, 303, 407, 437, 445, 494, 562
CviKI_1 RGCY 9 cut(s) 22, 45, 268, 303, 407, 437, 445, 494, 562
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 1 cut(s) 261
DpnI GATC 5 cut(s) 194, 390, 424, 573, 663
DpnII GATC 5 cut(s) 192, 388, 422, 571, 661
DrdI GACNNNNNNGTC 1 cut(s) 329
DriI GACNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 329
Eam1105I GACNNNNNGTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 50, 221
Eco24I GRGCYC 2 cut(s) 24, 47
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 438, 597
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 355, 495
EcoT14I CCWWGG 2 cut(s) 50, 221
EcoT38I GRGCYC 2 cut(s) 24, 47
ErhI CCWWGG 2 cut(s) 50, 221
FaeI CATG 5 cut(s) 16, 54, 244, 279, 480
FalI AAGNNNNNCTT 2 cut(s) 448, 480
FaqI GGGAC 2 cut(s) 145, 182
FatI CATG 5 cut(s) 12, 50, 240, 275, 476
Fnu4HI GCNGC 2 cut(s) 405, 518
FokI GGATG 2 cut(s) 124, 399
FriOI GRGCYC 2 cut(s) 24, 47
Fsp4HI GCNGC 2 cut(s) 405, 518
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 615, 641
GluI GCNGC 2 cut(s) 405, 518
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 3 cut(s) 268, 445, 494
HapII CCGG 3 cut(s) 17, 129, 166
HhaI GCGC 2 cut(s) 616, 642
Hin1II CATG 5 cut(s) 16, 54, 244, 279, 480
Hin6I GCGC 2 cut(s) 614, 640
HinP1I GCGC 2 cut(s) 614, 640
HincII GTYRAC 2 cut(s) 205, 541
HindII GTYRAC 2 cut(s) 205, 541
HinfI GANTC 2 cut(s) 82, 162
HpaII CCGG 3 cut(s) 17, 129, 166
Hpy166II GTNNAC 4 cut(s) 205, 317, 474, 541
Hpy188I TCNGA 1 cut(s) 701
Hpy188III TCNNGA 6 cut(s) 74, 148, 340, 416, 575, 604
Hpy8I GTNNAC 4 cut(s) 205, 317, 474, 541
Hpy99I CGWCG 2 cut(s) 43, 93
HpyAV CCTTC 3 cut(s) 218, 413, 604
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 2 cut(s) 7, 404
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 401, 500, 620
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 5 cut(s) 16, 54, 244, 279, 480
HspAI GCGC 2 cut(s) 614, 640
Kzo9I GATC 5 cut(s) 192, 388, 422, 571, 661
LmnI GCTCC 2 cut(s) 19, 27
Lsp1109I GCAGC 2 cut(s) 416, 529
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 543
MalI GATC 5 cut(s) 194, 390, 424, 573, 663
MboI GATC 5 cut(s) 192, 388, 422, 571, 661
MboII GAAGA 6 cut(s) 67, 203, 361, 417, 595, 619
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 3 cut(s) 388, 422, 571
MhlI GDGCHC 3 cut(s) 24, 47, 283
MluCI AATT 5 cut(s) 138, 285, 326, 628, 671
MlyI GAGTC 2 cut(s) 76, 156
MnlI CCTC 2 cut(s) 46, 256
MseI TTAA 3 cut(s) 95, 566, 644
MslI CAYNNNNRTG 1 cut(s) 274
MspCI CTTAAG 1 cut(s) 643
MspI CCGG 3 cut(s) 17, 129, 166
MspR9I CCNGG 4 cut(s) 130, 167, 357, 497
MunI CAATTG 1 cut(s) 671
MvaI CCWGG 2 cut(s) 357, 497
MwoI GCNNNNNNNGC 4 cut(s) 13, 401, 500, 620
NciI CCSGG 2 cut(s) 130, 167
NcoI CCATGG 1 cut(s) 50
NdeII GATC 5 cut(s) 192, 388, 422, 571, 661
NlaIII CATG 5 cut(s) 16, 54, 244, 279, 480
NlaIV GGNNCC 3 cut(s) 267, 390, 573
PfoI TCCNGGA 2 cut(s) 128, 165
PkrI GCNGC 2 cut(s) 406, 519
PleI GAGTC 2 cut(s) 76, 156
PpsI GAGTC 2 cut(s) 76, 156
Psp124BI GAGCTC 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 355, 495
PspGI CCWGG 2 cut(s) 355, 495
PspN4I GGNNCC 3 cut(s) 267, 390, 573
PspPI GGNCC 2 cut(s) 266, 493
PsuI RGATCY 3 cut(s) 388, 422, 571
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 274
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 95, 566, 644
SatI GCNGC 2 cut(s) 405, 518
Sau3AI GATC 5 cut(s) 192, 388, 422, 571, 661
Sau96I GGNCC 2 cut(s) 266, 493
SchI GAGTC 2 cut(s) 76, 156
ScrFI CCNGG 4 cut(s) 130, 167, 357, 497
SduI GDGCHC 3 cut(s) 24, 47, 283
SetI ASST 8 cut(s) 24, 67, 101, 210, 305, 358, 439, 546
SfaNI GCATC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 146, 643
SmoI CTYRAG 2 cut(s) 146, 643
Sse9I AATT 5 cut(s) 138, 285, 326, 628, 671
SsiI CCGC 2 cut(s) 25, 648
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 128, 165, 355, 495
StyI CCWWGG 2 cut(s) 50, 221
TaiI ACGT 1 cut(s) 546
TaqI TCGA 4 cut(s) 41, 91, 379, 605
TasI AATT 5 cut(s) 138, 285, 326, 628, 671
TatI WGTACW 1 cut(s) 681
Tru1I TTAA 3 cut(s) 95, 566, 644
Tru9I TTAA 3 cut(s) 95, 566, 644
TscAI CASTG 1 cut(s) 340
TseI GCWGC 2 cut(s) 404, 517
TspDTI ATGAA 2 cut(s) 229, 243
TspRI CASTG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 643
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.