Rh6BG042400

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006796
Physical Location & Seq
Reverse (-)
6863620 .. 6873389
9770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG042400.1

Sequence Viewer

Length: 1224 bp
ATGATGGAAGGGAATTCAAACACTGTGACACCTACTCCCACAAGCGTAGAGGCTGCATCAAGCATAGGGACTTCAATACCCTCATTCCCTGCTTCGGAAATAAGCCCTACTGCTGCTGCTGCAATTGTTTCGGTTCCACCTGGTCCTGCTGCCATTGTCCCAGGTCAACCCACCGACTCTACTGCTGATGTTATGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGAGTTGGCTGAGTTGAAAATGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGAAAAATTAGTCAGTGTCCTGATACATCTTTTACCTGCAACATTTGCAGCCATGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAGAACTCTCGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGATCTTGATATTCCATTCAGCCTTGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAATACTAGCTGCTGTTACATGGTATGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGATTATGGTCGATGGAAGGGAAGTAGCCAAGCTGAAGAATGAAGAGGAGAAAACCAAGCTGAAGTGTTGCTATATTGGGTTAATCAAAGAGCTGGTCGATTATGGTGAAGAGGTTGGGGTGGCAAAATTCGAGAAGCATAAAGCGATCTTATCACTATACAATGCCAAATTTGAACAGGTCGATGTCGTGAAGGTTATGGAGCTTCAAATTCCAGTGATCCTGAAAGTCGTTCGCCGTAGCCGCAATTGTTCGCTCACTGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

407

Amino Acids

45.55

Weight (kDa)

7.5

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 124 - 180 6.8e-18 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 658
AciI CCGC 1 cut(s) 1198
AclI AACGTT 1 cut(s) 711
AclWI GGATC 4 cut(s) 598, 734, 747, 1168
AcsI RAATTY 5 cut(s) 13, 1082, 1124, 1164, 1218
AcuI CTGAAG 4 cut(s) 606, 765, 1010, 1037
AfiI CCNNNNNNNGG 1 cut(s) 94
AflII CTTAAG 1 cut(s) 811
AgsI TTSAA 6 cut(s) 18, 75, 244, 527, 1130, 1163
AjnI CCWGG 3 cut(s) 139, 160, 663
AlwI GGATC 4 cut(s) 598, 734, 747, 1168
AoxI GGCC 2 cut(s) 470, 611
ApeKI GCWGC 8 cut(s) 53, 113, 116, 119, 149, 572, 685, 893
ApoI RAATTY 5 cut(s) 13, 1082, 1124, 1164, 1218
ArsI GACNNNNNNTTYG 4 cut(s) 298, 330, 1035, 1067
AspLEI GCGC 2 cut(s) 784, 810
AspS9I GGNCC 2 cut(s) 143, 470
AsuHPI GGTGA 2 cut(s) 334, 1073
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 2 cut(s) 487, 663
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 1 cut(s) 658
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 8 cut(s) 40, 100, 103, 106, 136, 584, 697, 880
BccI CCATC 2 cut(s) 266, 962
BceAI ACGGC 1 cut(s) 1176
BcgI CGANNNNNNTGC 4 cut(s) 111, 145, 164, 198
BciT130I CCWGG 3 cut(s) 141, 162, 665
BfaI CTAG 2 cut(s) 255, 890
BfmI CTRYAG 1 cut(s) 953
BfoI RGCGCY 1 cut(s) 811
BfrI CTTAAG 1 cut(s) 811
BfuAI ACCTGC 1 cut(s) 568
BisI GCNGC 9 cut(s) 54, 114, 117, 120, 150, 573, 686, 894, 1198
BlsI GCNGC 9 cut(s) 55, 115, 118, 121, 151, 574, 687, 895, 1199
Bme1390I CCNGG 3 cut(s) 141, 162, 665
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 470
BmiI GGNNCC 4 cut(s) 135, 471, 660, 741
BmrFI CCNGG 3 cut(s) 141, 162, 665
BmsI GCATC 3 cut(s) 65, 189, 589
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 160, 285, 425, 663
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 1169
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 3 cut(s) 141, 162, 665
BseDI CCNNGG 4 cut(s) 160, 285, 425, 663
BseGI GGATG 2 cut(s) 204, 580
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 228, 456
BseNI ACTGG 1 cut(s) 1169
BseRI GAGGAG 1 cut(s) 1016
BseSI GKGCMC 2 cut(s) 487, 663
BseXI GCAGC 8 cut(s) 40, 100, 103, 106, 136, 584, 697, 880
BshFI GGCC 2 cut(s) 472, 613
BshNI GGYRCC 1 cut(s) 658
BslFI GGGAC 2 cut(s) 82, 143
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 82, 143
BsnI GGCC 2 cut(s) 472, 613
Bsp1286I GDGCHC 2 cut(s) 487, 663
Bsp143I GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
BspACI CCGC 1 cut(s) 1198
BspANI GGCC 2 cut(s) 472, 613
BspCNI CTCAG 2 cut(s) 229, 457
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 4 cut(s) 135, 471, 660, 741
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 4 cut(s) 598, 734, 747, 1168
BspT107I GGYRCC 1 cut(s) 658
BspTI CTTAAG 1 cut(s) 811
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 1 cut(s) 1169
BssECI CCNNGG 4 cut(s) 160, 285, 425, 663
BssMI GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 3 cut(s) 141, 162, 665
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 3 cut(s) 320, 993, 1059
BstAFI CTTAAG 1 cut(s) 811
BstAPI GCANNNNNTGC 1 cut(s) 569
BstDEI CTNAG 2 cut(s) 237, 465
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 204, 580
BstH2I RGCGCY 1 cut(s) 811
BstHHI GCGC 2 cut(s) 784, 810
BstKTI GATC 7 cut(s) 226, 399, 593, 742, 820, 1104, 1176
BstMBI GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
BstMWI GCNNNNNNNGC 5 cut(s) 119, 569, 788, 854, 1197
BstNI CCWGG 3 cut(s) 141, 162, 665
BstSCI CCNGG 3 cut(s) 139, 160, 663
BstSFI CTRYAG 1 cut(s) 953
BstSLI GKGCMC 2 cut(s) 487, 663
BstV1I GCAGC 8 cut(s) 40, 100, 103, 106, 136, 584, 697, 880
BstX2I RGATCY 2 cut(s) 590, 739
BstXI CCANNNNNNTGG 2 cut(s) 480, 931
BstYI RGATCY 2 cut(s) 590, 739
BsuRI GGCC 2 cut(s) 472, 613
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 204, 580
BtsIMutI CAGTG 5 cut(s) 21, 485, 544, 1176, 1212
BveI ACCTGC 1 cut(s) 568
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 784, 810
Cfr13I GGNCC 2 cut(s) 143, 470
CsiI ACCWGGT 1 cut(s) 139
CviAII CATG 7 cut(s) 295, 317, 445, 480, 577, 645, 903
DdeI CTNAG 2 cut(s) 237, 465
DpnI GATC 7 cut(s) 225, 398, 592, 741, 819, 1103, 1175
DpnII GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
Eam1104I CTCTTC 3 cut(s) 320, 993, 1059
EarI CTCTTC 3 cut(s) 320, 993, 1059
Eco130I CCWWGG 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 4 cut(s) 606, 765, 1010, 1037
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 139, 160, 663
EcoT14I CCWWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 7 cut(s) 298, 320, 448, 483, 580, 648, 906
FalI AAGNNNNNCTT 2 cut(s) 616, 648
FaqI GGGAC 2 cut(s) 82, 143
FatI CATG 7 cut(s) 294, 316, 444, 479, 576, 644, 902
Fnu4HI GCNGC 9 cut(s) 54, 114, 117, 120, 150, 573, 686, 894, 1198
FokI GGATG 2 cut(s) 211, 567
Fsp4HI GCNGC 9 cut(s) 54, 114, 117, 120, 150, 573, 686, 894, 1198
FspBI CTAG 2 cut(s) 255, 890
GlaI GCGC 2 cut(s) 783, 809
GluI GCNGC 9 cut(s) 54, 114, 117, 120, 150, 573, 686, 894, 1198
HaeII RGCGCY 1 cut(s) 811
HaeIII GGCC 2 cut(s) 472, 613
HhaI GCGC 2 cut(s) 784, 810
Hin1II CATG 7 cut(s) 298, 320, 448, 483, 580, 648, 906
Hin6I GCGC 2 cut(s) 782, 808
HinP1I GCGC 2 cut(s) 782, 808
HincII GTYRAC 3 cut(s) 167, 409, 709
HindII GTYRAC 3 cut(s) 167, 409, 709
HinfI GANTC 2 cut(s) 176, 367
HphI GGTGA 2 cut(s) 334, 1073
Hpy166II GTNNAC 5 cut(s) 167, 409, 521, 642, 709
Hpy188I TCNGA 1 cut(s) 97
Hpy8I GTNNAC 5 cut(s) 167, 409, 521, 642, 709
HpyAV CCTTC 5 cut(s) 422, 581, 772, 966, 1141
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 6 cut(s) 56, 122, 213, 563, 572, 580
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 569, 788, 854, 1197
HpyF3I CTNAG 2 cut(s) 237, 465
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 7 cut(s) 298, 320, 448, 483, 580, 648, 906
HspAI GCGC 2 cut(s) 782, 808
Kzo9I GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
LmnI GCTCC 2 cut(s) 854, 1156
Lsp1109I GCAGC 8 cut(s) 40, 100, 103, 106, 136, 584, 697, 880
LweI GCATC 3 cut(s) 65, 189, 589
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 2 cut(s) 255, 890
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 25, 898
MalI GATC 7 cut(s) 225, 398, 592, 741, 819, 1103, 1175
MboI GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
MboII GAAGA 8 cut(s) 337, 376, 407, 585, 787, 1003, 1010, 1076
MfeI CAATTG 2 cut(s) 123, 1201
MflI RGATCY 2 cut(s) 590, 739
MhlI GDGCHC 2 cut(s) 487, 663
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 9 cut(s) 43, 91, 305, 313, 321, 460, 689, 994, 1060
Mph1103I ATGCAT 1 cut(s) 582
MseI TTAA 3 cut(s) 734, 812, 1037
MslI CAYNNNNRTG 2 cut(s) 478, 929
MspCI CTTAAG 1 cut(s) 811
MspR9I CCNGG 3 cut(s) 141, 162, 665
MunI CAATTG 2 cut(s) 123, 1201
MvaI CCWGG 3 cut(s) 141, 162, 665
MwoI GCNNNNNNNGC 5 cut(s) 119, 569, 788, 854, 1197
NdeII GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
NlaIII CATG 7 cut(s) 298, 320, 448, 483, 580, 648, 906
NlaIV GGNNCC 4 cut(s) 135, 471, 660, 741
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 582
PagI TCATGA 1 cut(s) 316
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 9 cut(s) 55, 115, 118, 121, 151, 574, 687, 895, 1199
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp1406I AACGTT 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 139, 160, 663
PspGI CCWGG 3 cut(s) 139, 160, 663
PspN4I GGNNCC 4 cut(s) 135, 471, 660, 741
PspPI GGNCC 2 cut(s) 143, 470
PsuI RGATCY 2 cut(s) 590, 739
RseI CAYNNNNRTG 2 cut(s) 478, 929
SaqAI TTAA 3 cut(s) 734, 812, 1037
SatI GCNGC 9 cut(s) 54, 114, 117, 120, 150, 573, 686, 894, 1198
Sau3AI GATC 7 cut(s) 223, 396, 590, 739, 817, 1101, 1173
Sau96I GGNCC 2 cut(s) 143, 470
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 141, 162, 665
SduI GDGCHC 2 cut(s) 487, 663
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 3 cut(s) 65, 189, 589
SfcI CTRYAG 1 cut(s) 953
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 478, 929
SmlI CTYRAG 2 cut(s) 227, 811
SmoI CTYRAG 2 cut(s) 227, 811
SsiI CCGC 1 cut(s) 1198
SspMI CTAG 2 cut(s) 255, 890
StyD4I CCNGG 3 cut(s) 139, 160, 663
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 714
TaqI TCGA 6 cut(s) 362, 773, 966, 1053, 1086, 1137
TauI GCSGC 1 cut(s) 1200
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 734, 812, 1037
Tru9I TTAA 3 cut(s) 734, 812, 1037
TscAI CASTG 5 cut(s) 28, 492, 544, 1176, 1219
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 8 cut(s) 53, 113, 116, 119, 149, 572, 685, 893
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 4 cut(s) 311, 433, 447, 1011
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 5 cut(s) 28, 492, 544, 1176, 1219
Vha464I CTTAAG 1 cut(s) 811
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 5 cut(s) 13, 1082, 1124, 1164, 1218
XspI CTAG 2 cut(s) 255, 890
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.