MD02G1085700.v1.1

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0006796
Physical Location & Seq
Reverse (-)
6732268 .. 6735336
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1085700.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGTCCAACGGCGACGACCCAATGGAGGAAACAAATGGGGATTCGTTTCACCAAGCAGTGAGGCAAGGGTTGAAAGACCGATCAAAGAAAGTTGCTCAAACCAAAGAGATTTTGTCGAAACAAGCGGTTCAGACCAGAGAGATCCTCTCAAAGCAGGCTGTGAAGATCGTCAAGCAAGCTGAGGAACACGAAAAGTTCATCAACAAGGTGACGCATCTTGTGGGGGTTCTCGGTTTCGGTGGAATTTGCTTCCTCTTAGGAGCAAGACCGCAAGACACTCGATATGTATATTGTTTGTTCTATGTCATCTTTGTTCCTCTTCGTTGGATATACTATCGGTTCAAGAAGTGGCATTACTATCTTCTGGACTTTTGCTACTATGCCAATACGATATTTTTGGTTGACCTGCTTCTTTATCCAAGGAACGAAAAGTTTTTCATGGTTTGCTTCTCATTTGCTGAGGGGCCGTTAGCATGGGCATTGATCGTTTGGCGTTGTAGCTTGGTTTTTAGTTCTCTTGACAAAATTGTTAGTGTCCTCATACATCTTTTACCCGGGTTAGTTTTCTTCACCATTCGATGGTGGGATCCAGCAACTTTTGCAGCCATGCATCCGGAAGGAACTTCTCGCAGAGCTTCATGGCCTTACGTAGAAGACAAATCCTACCTTTGGTTATGGCTCTTTTGGGTCCCCTTGTTTGCTTACACCCTCTGGCAGGCTTTGTATTTCCTCATTGTCAATGTTTTACGCCGGCAAAGGCTGTTGAGAGATCCCGAAGTCATGACTTCTTACAGGGAGCTCTCAAAGAAGGCGCAGAAAGCAAACAATGTATGGTGGCGCTTGAGCGGTTTGCTTGGGGATCAGAATCGCTTGCTCATGTACATTCTACTCCAAGGCGTATTCACTGTGGCGACAATGGCGCTCACAGTCCCTATCTTCCTGTCATATGAACTGCACGTTAGCTTCCAAATACTCAAGGTTTCCGCAACTGTATGGAACGGAGGAAGTTTCTTGCTCGAGGTAATGCCGAGGCAAGTGATTCTCAAGGAGAAGAAGAAATCAGAAGTGCAGCCAACACAAACTCAGGGGGATCAATCGTTGGATTGTGATCAAATGACAAGTAATCCAGTCGAGGCATCCCCAAGTCCTGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

386

Amino Acids

44.88

Weight (kDa)

9.25

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 69 - 178 7.3e-37 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 579
AccBSI CCGCTC 1 cut(s) 846
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 4 cut(s) 125, 269, 846, 984
AclWI GGATC 6 cut(s) 136, 581, 594, 764, 867, 1098
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 881
AfiI CCNNNNNNNGG 4 cut(s) 25, 579, 669, 715
AgsI TTSAA 2 cut(s) 73, 343
AluBI AGCT 5 cut(s) 179, 501, 635, 799, 963
AluI AGCT 5 cut(s) 179, 501, 635, 799, 963
Alw21I GWGCWC 1 cut(s) 801
AlwI GGATC 6 cut(s) 136, 581, 594, 764, 867, 1098
Ama87I CYCGRG 2 cut(s) 554, 1016
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 464, 641
ApeKI GCWGC 2 cut(s) 602, 1069
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 3 cut(s) 814, 840, 922
AspS9I GGNCC 2 cut(s) 464, 688
AsuC2I CCSGG 2 cut(s) 555, 556
AsuHPI GGTGA 3 cut(s) 41, 220, 562
AvaI CYCGRG 2 cut(s) 554, 1016
AvaII GGWCC 1 cut(s) 688
BamHI GGATCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 801
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 801
BbvCI CCTCAGC 2 cut(s) 180, 459
BbvI GCAGC 2 cut(s) 614, 1081
BccI CCATC 1 cut(s) 573
BceAI ACGGC 2 cut(s) 25, 451
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 2 cut(s) 555, 556
BfoI RGCGCY 2 cut(s) 841, 923
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 2 cut(s) 603, 1070
BlsI GCNGC 2 cut(s) 604, 1071
Bme1390I CCNGG 2 cut(s) 555, 556
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 554, 1016
BmgT120I GGNCC 2 cut(s) 464, 688
BmiI GGNNCC 4 cut(s) 465, 588, 689, 690
BmrFI CCNGG 2 cut(s) 555, 556
BmsI GCATC 3 cut(s) 223, 619, 1145
BpiI GAAGAC 1 cut(s) 660
BplI GAGNNNNNCTC 4 cut(s) 129, 161, 131, 163
Bpu10I CCTNAGC 2 cut(s) 180, 459
BpuEI CTTGAG 3 cut(s) 862, 959, 1028
BpuMI CCSGG 2 cut(s) 555, 556
BsaAI YACGTR 1 cut(s) 649
BsaBI GATNNNNATC 2 cut(s) 864, 1107
BsaJI CCNNGG 4 cut(s) 419, 554, 892, 1028
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 579, 669, 715
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 1 cut(s) 1127
Bse8I GATNNNNATC 2 cut(s) 864, 1107
BseAI TCCGGA 1 cut(s) 613
BseDI CCNNGG 4 cut(s) 419, 554, 892, 1028
BseGI GGATG 2 cut(s) 610, 1136
BseJI GATNNNNATC 2 cut(s) 864, 1107
BseLI CCNNNNNNNGG 4 cut(s) 25, 579, 669, 715
BseMII CTCAG 3 cut(s) 171, 450, 1097
BseNI ACTGG 1 cut(s) 1127
BseXI GCAGC 2 cut(s) 614, 1081
BsgI GTGCAG 2 cut(s) 938, 1088
BshFI GGCC 2 cut(s) 466, 643
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 2 cut(s) 554, 1016
BsiSI CCGG 3 cut(s) 555, 614, 751
BslFI GGGAC 2 cut(s) 674, 914
BslI CCNNNNNNNGG 4 cut(s) 25, 579, 669, 715
BsmFI GGGAC 2 cut(s) 674, 914
BsnI GGCC 2 cut(s) 466, 643
BsoBI CYCGRG 2 cut(s) 554, 1016
Bsp1286I GDGCHC 1 cut(s) 801
Bsp13I TCCGGA 1 cut(s) 613
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
BspACI CCGC 4 cut(s) 125, 269, 846, 984
BspANI GGCC 2 cut(s) 466, 643
BspCNI CTCAG 3 cut(s) 172, 451, 1096
BspEI TCCGGA 1 cut(s) 613
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 4 cut(s) 465, 588, 689, 690
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 6 cut(s) 136, 581, 594, 764, 867, 1098
BsrBI CCGCTC 1 cut(s) 846
BsrFI RCCGGY 1 cut(s) 750
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 1 cut(s) 1127
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 4 cut(s) 419, 554, 892, 1028
BssMI GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
BssT1I CCWWGG 2 cut(s) 419, 892
Bst4CI ACNGT 3 cut(s) 907, 928, 991
Bst6I CTCTTC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 879
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 5 cut(s) 156, 177, 717, 752, 872
BstDEI CTNAG 4 cut(s) 180, 256, 459, 1083
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 2 cut(s) 610, 1136
BstH2I RGCGCY 2 cut(s) 841, 923
BstHHI GCGC 3 cut(s) 814, 840, 922
BstKTI GATC 9 cut(s) 83, 144, 168, 486, 589, 772, 862, 1093, 1111
BstMBI GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
BstMWI GCNNNNNNNGC 3 cut(s) 599, 818, 917
BstSCI CCNGG 2 cut(s) 553, 554
BstSNI TACGTA 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 614, 1081
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 3 cut(s) 141, 586, 769
BstYI RGATCY 3 cut(s) 141, 586, 769
BsuRI GGCC 2 cut(s) 466, 643
BtsCI GGATG 2 cut(s) 610, 1136
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 903
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 5 cut(s) 156, 177, 717, 752, 872
CciI TCATGA 1 cut(s) 780
CfoI GCGC 3 cut(s) 814, 840, 922
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 2 cut(s) 464, 688
Cfr9I CCCGGG 1 cut(s) 554
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 880
CviAII CATG 6 cut(s) 439, 474, 607, 639, 781, 877
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 4 cut(s) 180, 256, 459, 1083
DpnI GATC 9 cut(s) 82, 143, 167, 485, 588, 771, 861, 1092, 1110
DpnII GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 799
Eco105I TACGTA 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 419, 892
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 688
Eco53kI GAGCTC 1 cut(s) 799
Eco88I CYCGRG 2 cut(s) 554, 1016
EcoICRI GAGCTC 1 cut(s) 799
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 688
EcoT14I CCWWGG 2 cut(s) 419, 892
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 419, 892
FaeI CATG 6 cut(s) 442, 477, 610, 642, 784, 880
FaqI GGGAC 2 cut(s) 674, 914
FatI CATG 6 cut(s) 438, 473, 606, 638, 780, 876
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 1 cut(s) 1108
Fnu4HI GCNGC 2 cut(s) 603, 1070
FokI GGATG 2 cut(s) 597, 1123
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 2 cut(s) 603, 1070
GlaI GCGC 3 cut(s) 813, 839, 921
GluI GCNGC 2 cut(s) 603, 1070
HaeII RGCGCY 2 cut(s) 841, 923
HaeIII GGCC 2 cut(s) 466, 643
HapII CCGG 3 cut(s) 555, 614, 751
HgaI GACGC 1 cut(s) 220
HhaI GCGC 3 cut(s) 814, 840, 922
Hin1II CATG 6 cut(s) 442, 477, 610, 642, 784, 880
Hin6I GCGC 3 cut(s) 812, 838, 920
HinP1I GCGC 3 cut(s) 812, 838, 920
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 41, 865, 1039
HpaII CCGG 3 cut(s) 555, 614, 751
HphI GGTGA 3 cut(s) 41, 220, 562
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 132, 864, 1063
Hpy188III TCNNGA 6 cut(s) 343, 365, 518, 614, 773, 781
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 611, 802
HpyCH4III ACNGT 3 cut(s) 907, 928, 991
HpyCH4IV ACGT 2 cut(s) 648, 957
HpyCH4V TGCA 4 cut(s) 602, 610, 955, 1069
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 818, 917
HpyF3I CTNAG 4 cut(s) 180, 256, 459, 1083
HpySE526I ACGT 2 cut(s) 648, 957
Hsp92II CATG 6 cut(s) 442, 477, 610, 642, 784, 880
HspAI GCGC 3 cut(s) 812, 838, 920
KflI GGGWCCC 1 cut(s) 688
Kpn2I TCCGGA 1 cut(s) 613
KroI GCCGGC 1 cut(s) 750
KroNI GCCGGC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
LmnI GCTCC 2 cut(s) 260, 796
Lsp1109I GCAGC 2 cut(s) 614, 1081
LweI GCATC 3 cut(s) 223, 619, 1145
MaeII ACGT 2 cut(s) 648, 957
MaeIII GTNAC 1 cut(s) 208
MalI GATC 9 cut(s) 82, 143, 167, 485, 588, 771, 861, 1092, 1110
MbiI CCGCTC 1 cut(s) 846
MboI GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
MboII GAAGA 8 cut(s) 175, 311, 353, 559, 665, 928, 1063, 1066
MflI RGATCY 3 cut(s) 141, 586, 769
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 2 cut(s) 243, 525
MmeI TCCRAC 3 cut(s) 30, 305, 1080
Mph1103I ATGCAT 1 cut(s) 612
MroI TCCGGA 1 cut(s) 613
MroNI GCCGGC 1 cut(s) 750
MspI CCGG 3 cut(s) 555, 614, 751
MspR9I CCNGG 2 cut(s) 555, 556
MwoI GCNNNNNNNGC 3 cut(s) 599, 818, 917
NaeI GCCGGC 1 cut(s) 752
NciI CCSGG 2 cut(s) 555, 556
NdeI CATATG 1 cut(s) 946
NdeII GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
NgoMIV GCCGGC 1 cut(s) 750
NlaIII CATG 6 cut(s) 442, 477, 610, 642, 784, 880
NlaIV GGNNCC 4 cut(s) 465, 588, 689, 690
NmeAIII GCCGAG 1 cut(s) 1053
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 1016
PagI TCATGA 1 cut(s) 780
PdiI GCCGGC 1 cut(s) 752
PfeI GAWTC 3 cut(s) 41, 865, 1039
PflMI CCANNNNNTGG 1 cut(s) 579
PkrI GCNGC 2 cut(s) 604, 1071
Ppu21I YACGTR 1 cut(s) 649
PpuMI RGGWCCY 1 cut(s) 688
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 688
PspN4I GGNNCC 4 cut(s) 465, 588, 689, 690
PspPI GGNCC 2 cut(s) 464, 688
PspPPI RGGWCCY 1 cut(s) 688
PspXI VCTCGAGB 1 cut(s) 1016
PsuI RGATCY 3 cut(s) 141, 586, 769
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
SacI GAGCTC 1 cut(s) 801
SatI GCNGC 2 cut(s) 603, 1070
Sau3AI GATC 9 cut(s) 80, 141, 165, 483, 586, 769, 859, 1090, 1108
Sau96I GGNCC 2 cut(s) 464, 688
ScrFI CCNGG 2 cut(s) 555, 556
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 3 cut(s) 223, 619, 1145
Sfr274I CTCGAG 1 cut(s) 1016
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 1016
SmaI CCCGGG 1 cut(s) 556
SmlI CTYRAG 4 cut(s) 841, 974, 1016, 1043
SmoI CTYRAG 4 cut(s) 841, 974, 1016, 1043
SnaBI TACGTA 1 cut(s) 649
Sse9I AATT 2 cut(s) 243, 525
SsiI CCGC 4 cut(s) 125, 269, 846, 984
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 2 cut(s) 553, 554
StyI CCWWGG 2 cut(s) 419, 892
TaaI ACNGT 3 cut(s) 907, 928, 991
TaiI ACGT 2 cut(s) 651, 960
TaqI TCGA 5 cut(s) 116, 280, 577, 1017, 1131
TaqII GACCGA 1 cut(s) 93
TasI AATT 2 cut(s) 243, 525
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 3 cut(s) 41, 865, 1039
TscAI CASTG 2 cut(s) 63, 910
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 602, 1069
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 4 cut(s) 187, 427, 627, 963
TspGWI ACGGA 1 cut(s) 1014
TspMI CCCGGG 1 cut(s) 554
TspRI CASTG 2 cut(s) 63, 910
Van91I CCANNNNNTGG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 688
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 1 cut(s) 243
XhoI CTCGAG 1 cut(s) 1016
XmaI CCCGGG 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.