Rh2BG465000

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006796
Physical Location & Seq
Reverse (-)
65669724 .. 65671569
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG465000.1

Sequence Viewer

Length: 849 bp
ATGGGTTTTGTGAGAGATTTCGAGAATGTGGATGAGGAATTTGATGTTATGGGGATGCCTTTGGAGTGCAAGTTTTGTGGTCTTGAGTTGGCTGAGTTGAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTAATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCACGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTATGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTATGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACATGTCCAATCTCTCACCGTCCTCATTCCCTGCGTTTTGGTTCATGTCCTTTCTTTCACCCTTATCTGATTATTTCATTCTTGACAGAGAACTCTCGAAGAAGGAGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTACATTGTTCAAGTAGTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

282

Amino Acids

32.88

Weight (kDa)

6.33

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 76 - 132 1.5e-18 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 550
AciI CCGC 1 cut(s) 792
AclI AACGTT 2 cut(s) 104, 603
AclWI GGATC 6 cut(s) 443, 456, 490, 626, 639, 813
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 498, 657
AfaI GTAC 1 cut(s) 827
AflII CTTAAG 1 cut(s) 787
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 2 cut(s) 100, 836
AjnI CCWGG 2 cut(s) 415, 555
AluBI AGCT 4 cut(s) 122, 363, 497, 580
AluI AGCT 4 cut(s) 122, 363, 497, 580
AlwI GGATC 6 cut(s) 443, 456, 490, 626, 639, 813
AoxI GGCC 2 cut(s) 326, 503
ApeKI GCWGC 2 cut(s) 464, 577
ApoI RAATTY 1 cut(s) 38
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 190, 660, 702
BaeGI GKGCMC 2 cut(s) 343, 555
BamHI GGATCC 2 cut(s) 448, 631
BanI GGYRCC 1 cut(s) 550
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 476, 589
BccI CCATC 2 cut(s) 122, 435
BciT130I CCWGG 2 cut(s) 417, 557
BfaI CTAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 787
BfrI CTTAAG 1 cut(s) 787
BisI GCNGC 2 cut(s) 465, 578
BlsI GCNGC 2 cut(s) 466, 579
Bme1390I CCNGG 2 cut(s) 417, 557
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 4 cut(s) 327, 450, 552, 633
BmrFI CCNGG 2 cut(s) 417, 557
BmsI GCATC 2 cut(s) 45, 481
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 810
BsaJI CCNNGG 4 cut(s) 141, 281, 416, 555
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse3DI GCAATG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 810
BseBI CCWGG 2 cut(s) 417, 557
BseCI ATCGAT 1 cut(s) 814
BseDI CCNNGG 4 cut(s) 141, 281, 416, 555
BseGI GGATG 3 cut(s) 37, 60, 472
BseJI GATNNNNATC 1 cut(s) 810
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 84, 312
BseSI GKGCMC 2 cut(s) 343, 555
BseXI GCAGC 2 cut(s) 476, 589
BshFI GGCC 2 cut(s) 328, 505
BshNI GGYRCC 1 cut(s) 550
BshVI ATCGAT 1 cut(s) 814
BsnI GGCC 2 cut(s) 328, 505
Bsp1286I GDGCHC 2 cut(s) 343, 555
Bsp1407I TGTACA 1 cut(s) 825
Bsp143I GATC 5 cut(s) 252, 448, 482, 631, 805
BspACI CCGC 1 cut(s) 792
BspANI GGCC 2 cut(s) 328, 505
BspCNI CTCAG 2 cut(s) 85, 313
BspDI ATCGAT 1 cut(s) 814
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 4 cut(s) 327, 450, 552, 633
BspPI GGATC 6 cut(s) 443, 456, 490, 626, 639, 813
BspT107I GGYRCC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 825
BssECI CCNNGG 4 cut(s) 141, 281, 416, 555
BssMI GATC 5 cut(s) 252, 448, 482, 631, 805
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 417, 557
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 787
BstAPI GCANNNNNTGC 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 825
BstDEI CTNAG 2 cut(s) 93, 321
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 37, 60, 472
BstH2I RGCGCY 1 cut(s) 787
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 5 cut(s) 255, 451, 485, 634, 808
BstMBI GATC 5 cut(s) 252, 448, 482, 631, 805
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 2 cut(s) 417, 557
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 2 cut(s) 415, 555
BstSLI GKGCMC 2 cut(s) 343, 555
BstV1I GCAGC 2 cut(s) 476, 589
BstX2I RGATCY 3 cut(s) 448, 482, 631
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 3 cut(s) 448, 482, 631
Bsu15I ATCGAT 1 cut(s) 814
BsuRI GGCC 2 cut(s) 328, 505
BsuTUI ATCGAT 1 cut(s) 814
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 37, 60, 472
BtsIMutI CAGTG 1 cut(s) 400
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 786
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 814
Csp6I GTAC 1 cut(s) 826
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 7 cut(s) 151, 173, 301, 336, 537, 655, 697
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 2 cut(s) 93, 321
DpnI GATC 5 cut(s) 254, 450, 484, 633, 807
DpnII GATC 5 cut(s) 252, 448, 482, 631, 805
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 498, 657
EcoRII CCWGG 2 cut(s) 415, 555
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 7 cut(s) 154, 176, 304, 339, 540, 658, 700
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FatI CATG 7 cut(s) 150, 172, 300, 335, 536, 654, 696
Fnu4HI GCNGC 2 cut(s) 465, 578
FokI GGATG 3 cut(s) 44, 67, 459
Fsp4HI GCNGC 2 cut(s) 465, 578
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 785
GluI GCNGC 2 cut(s) 465, 578
HaeII RGCGCY 1 cut(s) 787
HaeIII GGCC 2 cut(s) 328, 505
HhaI GCGC 1 cut(s) 786
Hin1II CATG 7 cut(s) 154, 176, 304, 339, 540, 658, 700
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 2 cut(s) 265, 601
HindII GTYRAC 2 cut(s) 265, 601
HinfI GANTC 1 cut(s) 223
HphI GGTGA 3 cut(s) 190, 660, 702
Hpy166II GTNNAC 4 cut(s) 265, 377, 534, 601
Hpy188I TCNGA 2 cut(s) 721, 845
Hpy188III TCNNGA 9 cut(s) 22, 83, 173, 227, 400, 476, 635, 734, 748
Hpy8I GTNNAC 4 cut(s) 265, 377, 534, 601
HpyAV CCTTC 3 cut(s) 278, 473, 748
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 2 cut(s) 104, 603
HpyCH4V TGCA 2 cut(s) 69, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 2 cut(s) 93, 321
HpySE526I ACGT 2 cut(s) 104, 603
Hsp92II CATG 7 cut(s) 154, 176, 304, 339, 540, 658, 700
HspAI GCGC 1 cut(s) 784
Kzo9I GATC 5 cut(s) 252, 448, 482, 631, 805
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 2 cut(s) 476, 589
LweI GCATC 2 cut(s) 45, 481
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 104, 603
MalI GATC 5 cut(s) 254, 450, 484, 633, 807
MboI GATC 5 cut(s) 252, 448, 482, 631, 805
MboII GAAGA 6 cut(s) 193, 232, 263, 421, 477, 763
MflI RGATCY 3 cut(s) 448, 482, 631
MhlI GDGCHC 2 cut(s) 343, 555
MluCI AATT 4 cut(s) 38, 345, 386, 772
MnlI CCTC 6 cut(s) 28, 161, 169, 177, 316, 685
MseI TTAA 2 cut(s) 626, 788
MslI CAYNNNNRTG 1 cut(s) 334
MspCI CTTAAG 1 cut(s) 787
MspR9I CCNGG 2 cut(s) 417, 557
MvaI CCWGG 2 cut(s) 417, 557
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 5 cut(s) 252, 448, 482, 631, 805
NlaIII CATG 7 cut(s) 154, 176, 304, 339, 540, 658, 700
NlaIV GGNNCC 4 cut(s) 327, 450, 552, 633
NspI RCATGY 1 cut(s) 658
PagI TCATGA 1 cut(s) 172
PciI ACATGT 1 cut(s) 654
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 466, 579
PscI ACATGT 1 cut(s) 654
Psp1406I AACGTT 2 cut(s) 104, 603
Psp6I CCWGG 2 cut(s) 415, 555
PspGI CCWGG 2 cut(s) 415, 555
PspN4I GGNNCC 4 cut(s) 327, 450, 552, 633
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 3 cut(s) 448, 482, 631
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 1 cut(s) 334
SaqAI TTAA 2 cut(s) 626, 788
SatI GCNGC 2 cut(s) 465, 578
Sau3AI GATC 5 cut(s) 252, 448, 482, 631, 805
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 417, 557
SduI GDGCHC 2 cut(s) 343, 555
SfaNI GCATC 2 cut(s) 45, 481
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 83, 787
SmoI CTYRAG 2 cut(s) 83, 787
Sse9I AATT 4 cut(s) 38, 345, 386, 772
SsiI CCGC 1 cut(s) 792
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 415, 555
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 2 cut(s) 107, 606
TaqI TCGA 5 cut(s) 21, 218, 439, 749, 814
TasI AATT 4 cut(s) 38, 345, 386, 772
TatI WGTACW 1 cut(s) 825
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 626, 788
Tru9I TTAA 2 cut(s) 626, 788
TscAI CASTG 1 cut(s) 400
TseI GCWGC 2 cut(s) 464, 577
TspDTI ATGAA 5 cut(s) 167, 289, 303, 685, 718
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 787
XapI RAATTY 1 cut(s) 38
XceI RCATGY 1 cut(s) 658
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.