Rw7G037100

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006796
Physical Location & Seq
Reverse (-)
56304230 .. 56308067
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037100.1

Sequence Viewer

Length: 810 bp
ATGGAATTTGTCTCATTAGTCCAAGGGACTAAGAGTGTAAGGGAGTATGAGATTGAGTTCTCAAGGTTGTATAGCTTTACGATGGAGCTCATTTTCGCTAAGGCTATGGCCATTAAGCTCGCCGTCGATTCAGGTATTGGATTATTGGGTCTCACTCGATTTTGCGTTAAATTGTTTTCAATTGCTTCTGGGTATCTTTTGGTTAATTTCTTGGTTAATTTTTTTCCCCTAGACTCTGGGTATGTTTACTTATTTTTGTTTATCTTTGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGTAAGCAACAATTTCACATGGGCACTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACCTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCATGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAACAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAGAACTCTTGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTACATTGTTCAAATAGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

269

Amino Acids

31.62

Weight (kDa)

9.11

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 86 - 147 1.4e-13 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 595
AciI CCGC 1 cut(s) 753
AclI AACGTT 1 cut(s) 648
AclWI GGATC 6 cut(s) 488, 501, 535, 671, 684, 774
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 2 cut(s) 543, 702
AfaI GTAC 1 cut(s) 788
AflII CTTAAG 1 cut(s) 748
AgsI TTSAA 3 cut(s) 180, 712, 797
AjnI CCWGG 2 cut(s) 460, 600
AluBI AGCT 6 cut(s) 75, 88, 118, 408, 542, 625
AluI AGCT 6 cut(s) 75, 88, 118, 408, 542, 625
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 16, 155
AlwI GGATC 6 cut(s) 488, 501, 535, 671, 684, 774
AoxI GGCC 2 cut(s) 108, 548
ApeKI GCWGC 2 cut(s) 509, 622
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 2 cut(s) 721, 747
AsuHPI GGTGA 1 cut(s) 414
BaeGI GKGCMC 2 cut(s) 388, 600
BalI TGGCCA 1 cut(s) 110
BamHI GGATCC 2 cut(s) 493, 676
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 521, 634
BccI CCATC 2 cut(s) 76, 480
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 462, 602
BcoDI GTCTC 2 cut(s) 16, 155
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 748
BfrI CTTAAG 1 cut(s) 748
BisI GCNGC 2 cut(s) 510, 623
BlsI GCNGC 2 cut(s) 511, 624
Bme1390I CCNGG 2 cut(s) 462, 602
BmiI GGNNCC 3 cut(s) 495, 597, 678
BmrFI CCNGG 2 cut(s) 462, 602
BmsI GCATC 1 cut(s) 526
Bpu10I CCTNAGC 2 cut(s) 99, 360
BpuEI CTTGAG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 775
BsaBI GATNNNNATC 1 cut(s) 771
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 4 cut(s) 22, 320, 461, 600
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 2 cut(s) 462, 602
BseCI ATCGAT 1 cut(s) 775
BseDI CCNNGG 4 cut(s) 22, 320, 461, 600
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 1 cut(s) 771
BseMII CTCAG 1 cut(s) 351
BseSI GKGCMC 2 cut(s) 388, 600
BseXI GCAGC 2 cut(s) 521, 634
BshFI GGCC 2 cut(s) 110, 550
BshNI GGYRCC 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 90
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 16, 155
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 2 cut(s) 110, 550
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 90, 388, 600
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 5 cut(s) 291, 493, 527, 676, 766
BspACI CCGC 1 cut(s) 753
BspANI GGCC 2 cut(s) 110, 550
BspCNI CTCAG 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 775
BspLI GGNNCC 3 cut(s) 495, 597, 678
BspPI GGATC 6 cut(s) 488, 501, 535, 671, 684, 774
BspT107I GGYRCC 1 cut(s) 595
BspTI CTTAAG 1 cut(s) 748
BspTNI GGTCTC 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 786
BssECI CCNNGG 4 cut(s) 22, 320, 461, 600
BssMI GATC 5 cut(s) 291, 493, 527, 676, 766
BssT1I CCWWGG 2 cut(s) 22, 320
Bst2UI CCWGG 2 cut(s) 462, 602
BstAFI CTTAAG 1 cut(s) 748
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 30, 99, 360
BstF5I GGATG 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 748
BstHHI GCGC 2 cut(s) 721, 747
BstKTI GATC 5 cut(s) 294, 496, 530, 679, 769
BstMAI GTCTC 2 cut(s) 16, 155
BstMBI GATC 5 cut(s) 291, 493, 527, 676, 766
BstMWI GCNNNNNNNGC 2 cut(s) 506, 725
BstNI CCWGG 2 cut(s) 462, 602
BstSCI CCNGG 2 cut(s) 460, 600
BstSLI GKGCMC 2 cut(s) 388, 600
BstV1I GCAGC 2 cut(s) 521, 634
BstX2I RGATCY 3 cut(s) 493, 527, 676
BstYI RGATCY 3 cut(s) 493, 527, 676
Bsu15I ATCGAT 1 cut(s) 775
BsuRI GGCC 2 cut(s) 110, 550
BsuTUI ATCGAT 1 cut(s) 775
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 386, 445
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 721, 747
ClaI ATCGAT 1 cut(s) 775
Csp6I GTAC 1 cut(s) 787
CviAII CATG 4 cut(s) 340, 381, 514, 582
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 3 cut(s) 30, 99, 360
DpnI GATC 5 cut(s) 293, 495, 529, 678, 768
DpnII GATC 5 cut(s) 291, 493, 527, 676, 766
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 22, 320
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 543, 702
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 460, 600
EcoT14I CCWWGG 2 cut(s) 22, 320
EcoT22I ATGCAT 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 22, 320
FaeI CATG 4 cut(s) 343, 384, 517, 585
FaqI GGGAC 1 cut(s) 40
FatI CATG 4 cut(s) 339, 380, 513, 581
Fnu4HI GCNGC 2 cut(s) 510, 623
FokI GGATG 1 cut(s) 504
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 510, 623
FspBI CTAG 1 cut(s) 230
GlaI GCGC 2 cut(s) 720, 746
GluI GCNGC 2 cut(s) 510, 623
HaeII RGCGCY 1 cut(s) 748
HaeIII GGCC 2 cut(s) 110, 550
HhaI GCGC 2 cut(s) 721, 747
Hin1II CATG 4 cut(s) 343, 384, 517, 585
Hin6I GCGC 2 cut(s) 719, 745
HinP1I GCGC 2 cut(s) 719, 745
HincII GTYRAC 2 cut(s) 304, 646
HindII GTYRAC 2 cut(s) 304, 646
HinfI GANTC 2 cut(s) 128, 233
HphI GGTGA 1 cut(s) 414
Hpy166II GTNNAC 5 cut(s) 247, 304, 422, 579, 646
Hpy188III TCNNGA 4 cut(s) 445, 521, 680, 709
Hpy8I GTNNAC 5 cut(s) 247, 304, 422, 579, 646
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 317, 518, 709
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 2 cut(s) 509, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 725
HpyF3I CTNAG 3 cut(s) 30, 99, 360
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 4 cut(s) 343, 384, 517, 585
HspAI GCGC 2 cut(s) 719, 745
Kzo9I GATC 5 cut(s) 291, 493, 527, 676, 766
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 521, 634
LweI GCATC 1 cut(s) 526
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 648
MalI GATC 5 cut(s) 293, 495, 529, 678, 768
MboI GATC 5 cut(s) 291, 493, 527, 676, 766
MboII GAAGA 4 cut(s) 302, 466, 522, 724
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 3 cut(s) 493, 527, 676
MhlI GDGCHC 3 cut(s) 90, 388, 600
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 8 cut(s) 5, 170, 180, 205, 217, 373, 431, 733
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 2 cut(s) 355, 626
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 519
MscI TGGCCA 1 cut(s) 110
MseI TTAA 6 cut(s) 114, 168, 204, 216, 671, 749
Msp20I TGGCCA 1 cut(s) 110
MspCI CTTAAG 1 cut(s) 748
MspR9I CCNGG 2 cut(s) 462, 602
MunI CAATTG 1 cut(s) 180
MvaI CCWGG 2 cut(s) 462, 602
MwoI GCNNNNNNNGC 2 cut(s) 506, 725
NdeII GATC 5 cut(s) 291, 493, 527, 676, 766
NlaIII CATG 4 cut(s) 343, 384, 517, 585
NlaIV GGNNCC 3 cut(s) 495, 597, 678
NsiI ATGCAT 1 cut(s) 519
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 511, 624
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 460, 600
PspGI CCWGG 2 cut(s) 460, 600
PspN4I GGNNCC 3 cut(s) 495, 597, 678
PsuI RGATCY 3 cut(s) 493, 527, 676
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 6 cut(s) 114, 168, 204, 216, 671, 749
SatI GCNGC 2 cut(s) 510, 623
Sau3AI GATC 5 cut(s) 291, 493, 527, 676, 766
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 462, 602
SduI GDGCHC 3 cut(s) 90, 388, 600
SfaNI GCATC 1 cut(s) 526
SmlI CTYRAG 2 cut(s) 61, 748
SmoI CTYRAG 2 cut(s) 61, 748
Sse9I AATT 8 cut(s) 5, 170, 180, 205, 217, 373, 431, 733
SsiI CCGC 1 cut(s) 753
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 460, 600
StyI CCWWGG 2 cut(s) 22, 320
TaiI ACGT 1 cut(s) 651
TaqI TCGA 4 cut(s) 126, 157, 484, 775
TasI AATT 8 cut(s) 5, 170, 180, 205, 217, 373, 431, 733
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 6 cut(s) 114, 168, 204, 216, 671, 749
Tru9I TTAA 6 cut(s) 114, 168, 204, 216, 671, 749
TscAI CASTG 2 cut(s) 393, 445
TseI GCWGC 2 cut(s) 509, 622
TspDTI ATGAA 2 cut(s) 328, 342
TspRI CASTG 2 cut(s) 393, 445
Vha464I CTTAAG 1 cut(s) 748
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.