FvH4_1g12200

Protein FMP32, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002615
Physical Location & Seq
Forward (+)
6667734 .. 6671465
3732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12200.t2

Sequence Viewer

Length: 708 bp
ATGGCCGCCGCTGCGGCGTGTAGACGGGTCGCCCAATCCGGGAGGATCGGGTTATCCGGGTTCGGAGCCCTCGGCGGTTCGAAGCTGATATCTCCGAGTTTGCCGCACCGGCAGTTGGATTGCAGGCTCATTTCAGAGCTTGTCAAATCCAGTAATGGAAAGCGCCTTTTTCTTGTTGACACATTAGCCTTGGTTAGGAGATTAGAGGGGCAAGGGGTGCCCTCGAAGCAGGCCGAAGCGATAACAGCTGCCATTACTGAGGTTTTGAATGACAGCTTGGAGAATGTGTCTCAGTCGTTTGTTTCCAAGGGGGAGCAGCAGAAAAATGAGATGATCCAAGACTCCAACTTGTCCAAATTCAAATCTGAAGTTCAAAGTTCACAGGGACACCATTTTTCTTTGTTGCAACATGAGACTGAAAAACTTCGGAATGATATAGAGAAGATGCGCAATGAATTAAGGTATGAAATCGATAAAGTTACTGCAGGGCAAAGGTTGGATTTGAATCTTGAAAGGGGGAGGATACGGGAAGAGCTAGCAAATCAGAATGCTGAAACCAATAACCTTACTAACAAACTTGATCGGGTAAGAATTTGGAGTGAAATATTCACACAATTGAACCAGTGGTTGACAACTTCCTTTTCTAAACGTTACTTTGCATCATTATCAGGAAATTCATGCTTTGCGCGCACAAGTGGAAGCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1640

Protein Analysis

236

Amino Acids

26.28

Weight (kDa)

9.51

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC90-like PF07798 59 - 232 3.8e-62 Coiled-coil domain-containing protein 90-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 22
AccII CGCG 1 cut(s) 688
AciI CCGC 6 cut(s) 6, 9, 14, 75, 104, 703
AclI AACGTT 1 cut(s) 649
AclWI GGATC 2 cut(s) 53, 328
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 356, 591, 673
AcuI CTGAAG 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 39, 115, 195
AgsI TTSAA 6 cut(s) 268, 361, 374, 505, 512, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 5 cut(s) 85, 139, 248, 276, 535
AluI AGCT 5 cut(s) 85, 139, 248, 276, 535
Alw26I GTCTC 2 cut(s) 294, 407
AlwI GGATC 2 cut(s) 53, 328
AoxI GGCC 2 cut(s) 3, 231
ApeKI GCWGC 3 cut(s) 11, 248, 316
ApoI RAATTY 3 cut(s) 356, 591, 673
Asp700I GAANNNNTTC 1 cut(s) 423
AspLEI GCGC 4 cut(s) 165, 450, 688, 690
AsuC2I CCSGG 2 cut(s) 40, 58
AsuII TTCGAA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 235, 328
BciVI GTATCC 1 cut(s) 516
BcnI CCSGG 2 cut(s) 40, 58
BcoDI GTCTC 2 cut(s) 294, 407
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 166
BfuI GTATCC 1 cut(s) 516
BglI GCCNNNNNGGC 2 cut(s) 14, 109
BisI GCNGC 8 cut(s) 6, 9, 12, 15, 104, 249, 317, 703
BlsI GCNGC 8 cut(s) 7, 10, 13, 16, 105, 250, 318, 704
Bme1390I CCNGG 2 cut(s) 40, 58
BmiI GGNNCC 2 cut(s) 67, 219
BmrFI CCNGG 2 cut(s) 40, 58
BmsI GCATC 2 cut(s) 435, 668
BmtI GCTAGC 1 cut(s) 539
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 40, 58
Bsa29I ATCGAT 1 cut(s) 471
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 70, 189, 306
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 115, 195
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 150, 622
Bse3DI GCAATG 1 cut(s) 457
Bse8I GATNNNNATC 1 cut(s) 504
BseCI ATCGAT 1 cut(s) 471
BseDI CCNNGG 3 cut(s) 70, 189, 306
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 39, 115, 195
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 249, 305
BseNI ACTGG 2 cut(s) 150, 622
BsePI GCGCGC 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 235, 328
Bsh1236I CGCG 1 cut(s) 688
BshFI GGCC 2 cut(s) 5, 233
BshNI GGYRCC 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 471
BsiSI CCGG 3 cut(s) 39, 57, 109
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 3 cut(s) 39, 115, 195
BsmAI GTCTC 2 cut(s) 294, 407
BsmFI GGGAC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 5, 233
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 70, 222
Bsp143I GATC 3 cut(s) 45, 333, 580
BspACI CCGC 6 cut(s) 6, 9, 14, 75, 104, 703
BspANI GGCC 2 cut(s) 5, 233
BspCNI CTCAG 2 cut(s) 250, 304
BspDI ATCGAT 1 cut(s) 471
BspFNI CGCG 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 67, 219
BspMAI CTGCAG 1 cut(s) 487
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 2 cut(s) 53, 328
BspQI GCTCTTC 1 cut(s) 525
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 2 cut(s) 150, 622
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 3 cut(s) 70, 189, 306
BssHII GCGCGC 1 cut(s) 686
BssMI GATC 3 cut(s) 45, 333, 580
BssT1I CCWWGG 2 cut(s) 189, 306
Bst6I CTCTTC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 4 cut(s) 125, 231, 537, 688
BstDEI CTNAG 2 cut(s) 258, 291
BstENI CCTNNNNNAGG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 4 cut(s) 165, 450, 688, 690
BstKTI GATC 3 cut(s) 48, 336, 583
BstMAI GTCTC 2 cut(s) 294, 407
BstMBI GATC 3 cut(s) 45, 333, 580
BstMWI GCNNNNNNNGC 7 cut(s) 11, 14, 109, 217, 226, 245, 687
BstSCI CCNGG 2 cut(s) 38, 56
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 2 cut(s) 235, 328
Bsu15I ATCGAT 1 cut(s) 471
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 2 cut(s) 5, 233
BsuTUI ATCGAT 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 4 cut(s) 125, 231, 537, 688
CfoI GCGC 4 cut(s) 165, 450, 688, 690
Cfr10I RCCGGY 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 471
CviAII CATG 2 cut(s) 410, 678
DdeI CTNAG 2 cut(s) 258, 291
DpnI GATC 3 cut(s) 47, 335, 582
DpnII GATC 3 cut(s) 45, 333, 580
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 2 cut(s) 189, 306
Eco24I GRGCYC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 387
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoRV GATATC 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 189, 306
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 189, 306
FaeI CATG 2 cut(s) 413, 681
FaiI YATR 4 cut(s) 411, 437, 465, 679
FaqI GGGAC 1 cut(s) 399
FatI CATG 2 cut(s) 409, 677
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 8 cut(s) 6, 9, 12, 15, 104, 249, 317, 703
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 8 cut(s) 6, 9, 12, 15, 104, 249, 317, 703
FspBI CTAG 1 cut(s) 536
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 4 cut(s) 164, 449, 687, 689
GluI GCNGC 8 cut(s) 6, 9, 12, 15, 104, 249, 317, 703
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 2 cut(s) 5, 233
HapII CCGG 3 cut(s) 39, 57, 109
HhaI GCGC 4 cut(s) 165, 450, 688, 690
Hin1II CATG 2 cut(s) 413, 681
Hin6I GCGC 4 cut(s) 163, 448, 686, 688
HinP1I GCGC 4 cut(s) 163, 448, 686, 688
HincII GTYRAC 2 cut(s) 178, 630
HindII GTYRAC 2 cut(s) 178, 630
HinfI GANTC 2 cut(s) 341, 505
HpaII CCGG 3 cut(s) 39, 57, 109
Hpy166II GTNNAC 4 cut(s) 23, 178, 380, 630
Hpy188I TCNGA 6 cut(s) 65, 96, 136, 367, 429, 546
Hpy188III TCNNGA 2 cut(s) 509, 669
Hpy8I GTNNAC 4 cut(s) 23, 178, 380, 630
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 4 cut(s) 123, 406, 485, 659
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 14, 109, 217, 226, 245, 687
HpyF3I CTNAG 2 cut(s) 258, 291
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 2 cut(s) 413, 681
HspAI GCGC 4 cut(s) 163, 448, 686, 688
Kzo9I GATC 3 cut(s) 45, 333, 580
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 2 cut(s) 65, 313
Lsp1109I GCAGC 2 cut(s) 235, 328
LweI GCATC 2 cut(s) 435, 668
MaeI CTAG 1 cut(s) 536
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 478, 650
MalI GATC 3 cut(s) 47, 335, 582
MboI GATC 3 cut(s) 45, 333, 580
MboII GAAGA 2 cut(s) 454, 542
MfeI CAATTG 1 cut(s) 614
MhlI GDGCHC 2 cut(s) 70, 222
MluCI AATT 5 cut(s) 356, 455, 591, 614, 673
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 3 cut(s) 96, 369, 477
MnlI CCTC 6 cut(s) 36, 80, 199, 232, 253, 513
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 1 cut(s) 458
MspA1I CMGCKG 2 cut(s) 11, 248
MspI CCGG 3 cut(s) 39, 57, 109
MspR9I CCNGG 2 cut(s) 40, 58
MunI CAATTG 1 cut(s) 614
Mva1269I GAATGC 1 cut(s) 553
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 7 cut(s) 11, 14, 109, 217, 226, 245, 687
NciI CCSGG 2 cut(s) 40, 58
NdeII GATC 3 cut(s) 45, 333, 580
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 2 cut(s) 413, 681
NlaIV GGNNCC 2 cut(s) 67, 219
NmeAIII GCCGAG 1 cut(s) 51
NsbI TGCGCA 1 cut(s) 449
NspV TTCGAA 1 cut(s) 80
PauI GCGCGC 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 525
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 8 cut(s) 7, 10, 13, 16, 105, 250, 318, 704
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 67, 219
PstI CTGCAG 1 cut(s) 487
PteI GCGCGC 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 8 cut(s) 6, 9, 12, 15, 104, 249, 317, 703
Sau3AI GATC 3 cut(s) 45, 333, 580
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 40, 58
SduI GDGCHC 2 cut(s) 70, 222
SfaNI GCATC 2 cut(s) 435, 668
SfcI CTRYAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 80
Sse9I AATT 5 cut(s) 356, 455, 591, 614, 673
SsiI CCGC 6 cut(s) 6, 9, 14, 75, 104, 703
SspI AATATT 1 cut(s) 606
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 38, 56
StyI CCWWGG 2 cut(s) 189, 306
TaiI ACGT 1 cut(s) 652
TaqI TCGA 3 cut(s) 80, 224, 471
TasI AATT 5 cut(s) 356, 455, 591, 614, 673
TauI GCSGC 5 cut(s) 8, 11, 17, 106, 705
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 1 cut(s) 629
TseI GCWGC 3 cut(s) 11, 248, 316
TspDTI ATGAA 3 cut(s) 468, 480, 666
TspRI CASTG 1 cut(s) 629
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 3 cut(s) 356, 591, 673
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.