Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002615

Physical Location & Seq

Genomic Coordinates Forward (+)

15990930 .. 15991627

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCGCTGCTGCGGCTTCTAGACGGGTCGCCCAATTGGGGACCGGGTCCGGGATCGGATTATCCGGTTTCGGAGGGCCCGGTGGTGCTTCGAGAACGGTGTCTCCGTCGGTGGAGTACAGGCATTTGGATTGCAGGCTGACTTCTCAGCTAGTCAAATCAAATGGAAAGCGGTTGTTTCTCGTCGATACATTAGCTCTGGTTAGGAGATTAGAGGGACAAGGCGTCCCCTCGAAGCACGCGGAGGCGATAACTGCTGCCATTACTGAAGTTTTGAATGACAGCTTGGAAAATGTGTCTCATTCATTTGTTACAAAAGGAGAGATGCAGAAAACGGAGATGATCGAAGAATCCAACTTGTCCAAATTCAAATCCGAAATTCAAAGTGCGCAGGTACTTACTAGCTCTTTCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1640

Protein Analysis

139

Amino Acids

14.66

Weight (kDa)

9.3

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16460 AT2G16460
fragaria_vesca	FvH4_1g12200 FvH4_1g12200 FvH4_2g10260 FvH4_2g10260
malus_domestica	MD00G1040600.v1.1 MD02G1135900.v1.1 MD15G1249500.v1.1
prunus_persica	Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.8G086000_v2.0.a1
pyrus_communis	pycom02g10720 pycom05g04710 pycom15g21990
rosa_chinensis	RchiOBHm_Chr2g0099971 RchiOBHm_Chr6g0267481
rosa_laevigata	RLG00000014000 RLG00000016926
rosa_multiflora	Rmu_co8441933.1_g000001 Rmu_sc0013563.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142690 Rroxscaffold_7G00200740
rosa_rugosa	Rorug02G0084400 Rorug02G0084500 Rorug06G0033100
rosa_samantha	Rh2AG133500 Rh2BG137000 Rh2CG138500 Rh2DG138900 Rh6AG154400 Rh6BG154900 Rh6CG150200 Rh6DG140100
rosa_wichuraiana	Rw2G010380 Rw2G010400 Rw6G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	382
AccII	CGCG	1 cut(s)	242
AciI	CCGC	4 cut(s)	6, 14, 172, 242
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	365, 378
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	119, 396
AfiI	CCNNNNNNNGG	2 cut(s)	39, 51
AgsI	TTSAA	3 cut(s)	277, 370, 383
AhdI	GACNNNNNGTC	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	4 cut(s)	151, 197, 285, 405
AluI	AGCT	4 cut(s)	151, 197, 285, 405
Alw26I	GTCTC	2 cut(s)	108, 303
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	3, 77
ApaI	GGGCCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	8, 11, 257
ApoI	RAATTY	2 cut(s)	365, 378
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	42, 48, 77, 78
AsuC2I	CCSGG	3 cut(s)	46, 52, 81
AvaII	GGWCC	2 cut(s)	42, 48
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	244
BcnI	CCSGG	3 cut(s)	46, 52, 81
BcoDI	GTCTC	2 cut(s)	108, 303
BfaI	CTAG	3 cut(s)	21, 152, 402
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	5 cut(s)	6, 9, 12, 15, 258
BlsI	GCNGC	5 cut(s)	7, 10, 13, 16, 259
Bme1390I	CCNGG	3 cut(s)	46, 52, 81
Bme18I	GGWCC	2 cut(s)	42, 48
BmeRI	GACNNNNNGTC	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	42, 48, 77, 78
BmiI	GGNNCC	3 cut(s)	43, 49, 79
BmrFI	CCNGG	3 cut(s)	46, 52, 81
BmsI	GCATC	1 cut(s)	315
BpuMI	CCSGG	3 cut(s)	46, 52, 81
BsaHI	GRCGYC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 51
BseLI	CCNNNNNNNGG	2 cut(s)	39, 51
BseMII	CTCAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	5, 79
BsiSI	CCGG	4 cut(s)	45, 51, 66, 81
BslFI	GGGAC	3 cut(s)	55, 212, 231
BslI	CCNNNNNNNGG	2 cut(s)	39, 51
BsmAI	GTCTC	2 cut(s)	108, 303
BsmFI	GGGAC	3 cut(s)	55, 212, 231
BsnI	GGCC	2 cut(s)	5, 79
Bsp120I	GGGCCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	54, 342
BspACI	CCGC	4 cut(s)	6, 14, 172, 242
BspANI	GGCC	2 cut(s)	5, 79
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	3 cut(s)	43, 49, 79
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	62
BssMI	GATC	2 cut(s)	54, 342
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	137, 240
BstDEI	CTNAG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	57, 345
BstMAI	GTCTC	2 cut(s)	108, 303
BstMBI	GATC	2 cut(s)	54, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 254
BstSCI	CCNGG	3 cut(s)	44, 50, 79
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	5, 79
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	137, 240
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	4 cut(s)	42, 48, 77, 78
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	118, 395
CviJI	RGCY	8 cut(s)	5, 17, 79, 139, 151, 197, 285, 405
CviKI_1	RGCY	8 cut(s)	5, 17, 79, 139, 151, 197, 285, 405
CviQI	GTAC	2 cut(s)	118, 395
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	2 cut(s)	56, 344
DpnII	GATC	2 cut(s)	54, 342
DriI	GACNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	42, 48
Eco57I	CTGAAG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	81
FaqI	GGGAC	3 cut(s)	55, 212, 231
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 15, 258
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 15, 258
FspBI	CTAG	3 cut(s)	21, 152, 402
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	5 cut(s)	6, 9, 12, 15, 258
HaeIII	GGCC	2 cut(s)	5, 79
HapII	CCGG	4 cut(s)	45, 51, 66, 81
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	4 cut(s)	45, 51, 66, 81
Hpy188I	TCNGA	3 cut(s)	59, 74, 376
Hpy188III	TCNNGA	2 cut(s)	21, 93
Hpy99I	CGWCG	2 cut(s)	112, 188
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	135, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 254
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	54, 342
LpnPI	CCDG	8 cut(s)	58, 64, 79, 94, 106, 121, 185, 377
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	3 cut(s)	21, 152, 402
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	2 cut(s)	56, 344
MboI	GATC	2 cut(s)	54, 342
MboII	GAAGA	1 cut(s)	359
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	35, 365, 378
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	4 cut(s)	68, 208, 238, 241
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	4 cut(s)	45, 51, 66, 81
MspR9I	CCNGG	3 cut(s)	46, 52, 81
MunI	CAATTG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 254
NciI	CCSGG	3 cut(s)	46, 52, 81
NdeII	GATC	2 cut(s)	54, 342
NlaIV	GGNNCC	3 cut(s)	43, 49, 79
NsbI	TGCGCA	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	350
PflFI	GACNNNGTC	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	7, 10, 13, 16, 259
PspN4I	GGNNCC	3 cut(s)	43, 49, 79
PspOMI	GGGCCC	1 cut(s)	77
PspPI	GGNCC	4 cut(s)	42, 48, 77, 78
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	2 cut(s)	119, 396
RsaNI	GTAC	2 cut(s)	118, 395
SatI	GCNGC	5 cut(s)	6, 9, 12, 15, 258
Sau3AI	GATC	2 cut(s)	54, 342
Sau96I	GGNCC	4 cut(s)	42, 48, 77, 78
ScrFI	CCNGG	3 cut(s)	46, 52, 81
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	5 cut(s)	153, 199, 287, 396, 407
SfaNI	GCATC	1 cut(s)	315
SinI	GGWCC	2 cut(s)	42, 48
Sse9I	AATT	3 cut(s)	35, 365, 378
SsiI	CCGC	4 cut(s)	6, 14, 172, 242
SspMI	CTAG	3 cut(s)	21, 152, 402
StyD4I	CCNGG	3 cut(s)	44, 50, 79
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	4 cut(s)	92, 186, 233, 345
TasI	AATT	3 cut(s)	35, 365, 378
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	8, 17
TfiI	GAWTC	1 cut(s)	350
TseI	GCWGC	3 cut(s)	8, 11, 257
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	3 cut(s)	96, 350, 401
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	42, 48
XapI	RAATTY	2 cut(s)	365, 378
XbaI	TCTAGA	1 cut(s)	20
XspI	CTAG	3 cut(s)	21, 152, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.