Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002615

Physical Location & Seq

Genomic Coordinates Reverse (-)

16930220 .. 16933603

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G164700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCCGCTGCTGCGGCTTGTAAACGGGTCGGGCAATTAGGAACCAATTCGGGGTTCGGATTGTCCGGTTTCGGAGGTCCTGCTGCTTCGAAAGTTGCGGTGTCTCCGTCTTTGGAGTACAGGCATTTGGATTGCAGACTGATTTCTCAGCTCGTAAAATCTAATGGAAAGCGATTGTTTCTCGTCGACACATTAGCCTTGGTTAGGAGGTTAGAGGGCCAAGGCGTGCCCTCAAAGCATGCCGAGGCGATAACAGCTGCCATTACTGAAGTTTTGAACGATAGCTTGGAAAATGTGTCTAATTCATTTGTTTCCAAAGGAGAGATGCAGAAAACCGAGATGATCCAAGAATCCAATTTGTCCAAATTCAAATCCGAAATTCAAAGCGCACAGGGACACCATTTTTCTTTGTTGCAACATGAGACTGAAAAACTTCGGAATGATATAGAGAAGATGCGTAGCGAATTGAGGTATGAAATCGACAAAGTTACTGCAGGGCAGCGGTTGGACTTGAATCTTGAAAGGGGGAGGATACGGGAAGAGCTATCAAATCAGAATGCAGAAACTAATAACCTTACTAACAAACTTGATCGGGAAATTCATGCTCTAAGGGCACAGGTGGAAGCAGCAAAATATGATGTCATAAAATACTGCATAGGTACTCTTGTTTCCATTTCTGCTGTTGGTCTTGCTGTGCTTCGTATCTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1640

Protein Analysis

238

Amino Acids

26.09

Weight (kDa)

8.73

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16460 AT2G16460
fragaria_vesca	FvH4_1g12200 FvH4_1g12200 FvH4_2g10260 FvH4_2g10260
malus_domestica	MD00G1040600.v1.1 MD02G1135900.v1.1 MD15G1249500.v1.1
prunus_persica	Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.8G086000_v2.0.a1
pyrus_communis	pycom02g10720 pycom05g04710 pycom15g21990
rosa_chinensis	RchiOBHm_Chr2g0099971 RchiOBHm_Chr6g0267481
rosa_laevigata	RLG00000014000 RLG00000016926
rosa_multiflora	Rmu_co8441933.1_g000001 Rmu_sc0013563.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142690 Rroxscaffold_7G00200740
rosa_rugosa	Rorug02G0084400 Rorug02G0084500 Rorug06G0033100
rosa_samantha	Rh2AG133500 Rh2BG137000 Rh2CG138500 Rh2DG138900 Rh6AG154400 Rh6BG154900 Rh6CG150200 Rh6DG140100
rosa_wichuraiana	Rw2G010380 Rw2G010400 Rw6G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	6, 14, 98, 502
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	365, 378, 597
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	119, 661
AfiI	CCNNNNNNNGG	2 cut(s)	51, 204
AgsI	TTSAA	5 cut(s)	277, 370, 383, 514, 521
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 269, 301
AluBI	AGCT	4 cut(s)	151, 257, 285, 544
AluI	AGCT	4 cut(s)	151, 257, 285, 544
Alw26I	GTCTC	2 cut(s)	108, 416
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	3, 217
ApeKI	GCWGC	6 cut(s)	8, 11, 83, 257, 499, 626
ApoI	RAATTY	3 cut(s)	365, 378, 597
Asp700I	GAANNNNTTC	2 cut(s)	46, 432
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	77, 217
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	231, 616
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BbvI	GCAGC	4 cut(s)	70, 244, 511, 638
BciVI	GTATCC	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	108, 416
BfmI	CTRYAG	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	8 cut(s)	6, 9, 12, 15, 84, 258, 500, 627
BlsI	GCNGC	8 cut(s)	7, 10, 13, 16, 85, 259, 501, 628
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	77, 217
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	315, 444
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	198, 220, 243
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 204
BseDI	CCNNGG	3 cut(s)	198, 220, 243
BseLI	CCNNNNNNNGG	2 cut(s)	51, 204
BseMII	CTCAG	1 cut(s)	161
BseSI	GKGCMC	2 cut(s)	231, 616
BseXI	GCAGC	4 cut(s)	70, 244, 511, 638
BshFI	GGCC	2 cut(s)	5, 219
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	51, 204
BsmAI	GTCTC	2 cut(s)	108, 416
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	5, 219
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	231, 616
Bsp143I	GATC	2 cut(s)	342, 589
BspACI	CCGC	4 cut(s)	6, 14, 98, 502
BspANI	GGCC	2 cut(s)	5, 219
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	198, 220, 243
BssMI	GATC	2 cut(s)	342, 589
BssT1I	CCWWGG	2 cut(s)	198, 220
Bst6I	CTCTTC	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	227, 240
BstDEI	CTNAG	2 cut(s)	147, 608
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	2 cut(s)	345, 592
BstMAI	GTCTC	2 cut(s)	108, 416
BstMBI	GATC	2 cut(s)	342, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 235, 254, 611
BstNSI	RCATGY	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	2 cut(s)	231, 616
BstV1I	GCAGC	4 cut(s)	70, 244, 511, 638
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	5, 219
Cac8I	GCNNGC	2 cut(s)	227, 240
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	77, 217
Csp6I	GTAC	2 cut(s)	118, 660
CviAII	CATG	3 cut(s)	239, 419, 602
CviJI	RGCY	8 cut(s)	5, 17, 151, 197, 219, 257, 285, 544
CviKI_1	RGCY	8 cut(s)	5, 17, 151, 197, 219, 257, 285, 544
CviQI	GTAC	2 cut(s)	118, 660
DdeI	CTNAG	2 cut(s)	147, 608
DpnI	GATC	2 cut(s)	344, 591
DpnII	GATC	2 cut(s)	342, 589
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	198, 220
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	198, 220
ErhI	CCWWGG	2 cut(s)	198, 220
FaeI	CATG	3 cut(s)	242, 422, 605
FaiI	YATR	8 cut(s)	240, 420, 446, 474, 603, 636, 644, 656
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	238, 418, 601
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 84, 258, 500, 627
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 84, 258, 500, 627
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	8 cut(s)	6, 9, 12, 15, 84, 258, 500, 627
HaeIII	GGCC	2 cut(s)	5, 219
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	242, 422, 605
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	350, 514
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	23, 187
Hpy188I	TCNGA	5 cut(s)	59, 74, 376, 438, 555
Hpy188III	TCNNGA	2 cut(s)	518, 593
Hpy8I	GTNNAC	2 cut(s)	23, 187
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4V	TGCA	6 cut(s)	135, 328, 415, 494, 560, 654
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 235, 254, 611
HpyF3I	CTNAG	2 cut(s)	147, 608
Hsp92II	CATG	3 cut(s)	242, 422, 605
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	342, 589
LguI	GCTCTTC	1 cut(s)	534
LpnPI	CCDG	6 cut(s)	79, 93, 106, 377, 480, 602
Lsp1109I	GCAGC	4 cut(s)	70, 244, 511, 638
LweI	GCATC	2 cut(s)	315, 444
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	2 cut(s)	344, 591
MboI	GATC	2 cut(s)	342, 589
MboII	GAAGA	2 cut(s)	463, 551
MhlI	GDGCHC	2 cut(s)	231, 616
MluCI	AATT	8 cut(s)	35, 46, 301, 355, 365, 378, 464, 597
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	7 cut(s)	68, 201, 208, 238, 241, 462, 522
MroXI	GAANNNNTTC	2 cut(s)	46, 432
MspA1I	CMGCKG	3 cut(s)	8, 257, 502
MspI	CCGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	562
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 235, 254, 611
NdeII	GATC	2 cut(s)	342, 589
NlaIII	CATG	3 cut(s)	242, 422, 605
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	2 cut(s)	46, 432
PfeI	GAWTC	2 cut(s)	350, 514
PkrI	GCNGC	8 cut(s)	7, 10, 13, 16, 85, 259, 501, 628
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	77, 217
PspPPI	RGGWCCY	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	119, 661
RsaNI	GTAC	2 cut(s)	118, 660
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	534
SatI	GCNGC	8 cut(s)	6, 9, 12, 15, 84, 258, 500, 627
Sau3AI	GATC	2 cut(s)	342, 589
Sau96I	GGNCC	2 cut(s)	77, 217
SduI	GDGCHC	2 cut(s)	231, 616
SfaNI	GCATC	2 cut(s)	315, 444
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	77
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	8 cut(s)	35, 46, 301, 355, 365, 378, 464, 597
SsiI	CCGC	4 cut(s)	6, 14, 98, 502
StyI	CCWWGG	2 cut(s)	198, 220
TaqI	TCGA	3 cut(s)	89, 186, 480
TasI	AATT	8 cut(s)	35, 46, 301, 355, 365, 378, 464, 597
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	8, 17
TfiI	GAWTC	2 cut(s)	350, 514
TseI	GCWGC	6 cut(s)	8, 11, 83, 257, 499, 626
TspDTI	ATGAA	3 cut(s)	294, 489, 590
TspGWI	ACGGA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	202
XapI	RAATTY	3 cut(s)	365, 378, 597
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	2 cut(s)	46, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.