Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002615

Physical Location & Seq

Genomic Coordinates Forward (+)

11582503 .. 11588085

Gene Structure 5583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG138900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCCGCTGCTGCGGCGTGTAAACGGGTCGCCCAATCCGGGTTCGGAGCTCTCGGCGGGTCCAAACTGATTTCTCCGAGTTTGCCGCACAGGCATTTGGATTGCAGGCTCATTTCCTCCGAGCTTGTCAAATCTACTAATGGAAAGCGCCTTTTTCTTGTTGACACATTAGCTTTGGTTAGGAGATTAGAGGGGCAAGGGGTGCCCTCGAAGCACGCCGAGGCCATAACAGCTGCCATCACTGAAGTTTTGAATGACAGCTTGGAGAATGTGTCTCAGTCGTTTGTTTCCAAGGCAGAGCAGCAGAAAAATGAGATGATCCAAGACTCGAACTTGTCCAAATTCAAATCCGAAGTTCAAAGTTCTCAGGGACACCACTTTTCTTTGTTGCAACACGAGACTGAAAAACTTCGGAATGATATAGAGAAGATGCGCAATGAATTGAGGTATGAAATCGACAAAGTTACTGCAGGGCAAAGGTTGGACTTGAATCTTGAAAGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1640

Protein Analysis

168

Amino Acids

18.59

Weight (kDa)

8.59

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC90-like	PF07798	54 - 168	1.1e-37	Coiled-coil domain-containing protein 90-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16460 AT2G16460
fragaria_vesca	FvH4_1g12200 FvH4_1g12200 FvH4_2g10260 FvH4_2g10260
malus_domestica	MD00G1040600.v1.1 MD02G1135900.v1.1 MD15G1249500.v1.1
prunus_persica	Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.8G086000_v2.0.a1
pyrus_communis	pycom02g10720 pycom05g04710 pycom15g21990
rosa_chinensis	RchiOBHm_Chr2g0099971 RchiOBHm_Chr6g0267481
rosa_laevigata	RLG00000014000 RLG00000016926
rosa_multiflora	Rmu_co8441933.1_g000001 Rmu_sc0013563.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142690 Rroxscaffold_7G00200740
rosa_rugosa	Rorug02G0084400 Rorug02G0084500 Rorug06G0033100
rosa_samantha	Rh2AG133500 Rh2BG137000 Rh2CG138500 Rh2DG138900 Rh6AG154400 Rh6BG154900 Rh6CG150200 Rh6DG140100
rosa_wichuraiana	Rw2G010380 Rw2G010400 Rw6G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	4 cut(s)	6, 14, 57, 86
AclWI	GGATC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	253, 346, 359, 490, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	5 cut(s)	50, 124, 173, 233, 261
AluI	AGCT	5 cut(s)	50, 124, 173, 233, 261
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	279, 392
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	2 cut(s)	3, 222
ApeKI	GCWGC	4 cut(s)	8, 11, 233, 301
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	150, 435
AspS9I	GGNCC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	220, 313
BccI	CCATC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	279, 392
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	91
BisI	GCNGC	7 cut(s)	6, 9, 12, 15, 86, 234, 302
BlsI	GCNGC	7 cut(s)	7, 10, 13, 16, 87, 235, 303
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	61, 204
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	219, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	442
BseDI	CCNNGG	2 cut(s)	219, 291
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	290, 380
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	220, 313
BshFI	GGCC	2 cut(s)	5, 224
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	279, 392
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	5, 224
Bsp1286I	GDGCHC	2 cut(s)	52, 207
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	4 cut(s)	6, 14, 57, 86
BspANI	GGCC	2 cut(s)	5, 224
BspCNI	CTCAG	2 cut(s)	289, 379
BspLI	GGNNCC	2 cut(s)	61, 204
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	219, 291
BssMI	GATC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	107, 216
BstDEI	CTNAG	2 cut(s)	276, 366
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 435
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	279, 392
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 14, 91, 202, 211, 230
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	220, 313
BsuRI	GGCC	2 cut(s)	5, 224
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	107, 216
CfoI	GCGC	2 cut(s)	150, 435
Cfr13I	GGNCC	1 cut(s)	60
CviJI	RGCY	8 cut(s)	5, 50, 109, 124, 173, 224, 233, 261
CviKI_1	RGCY	8 cut(s)	5, 50, 109, 124, 173, 224, 233, 261
DdeI	CTNAG	2 cut(s)	276, 366
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	291
FaiI	YATR	3 cut(s)	227, 422, 450
FaqI	GGGAC	1 cut(s)	384
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 15, 86, 234, 302
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 15, 86, 234, 302
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	2 cut(s)	149, 434
GluI	GCNGC	7 cut(s)	6, 9, 12, 15, 86, 234, 302
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	5, 224
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	2 cut(s)	150, 435
Hin6I	GCGC	2 cut(s)	148, 433
HinP1I	GCGC	2 cut(s)	148, 433
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	326, 490
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	23, 163
Hpy188I	TCNGA	5 cut(s)	47, 78, 121, 352, 414
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	2 cut(s)	23, 163
HpyCH4V	TGCA	3 cut(s)	105, 391, 470
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 14, 91, 202, 211, 230
HpyF3I	CTNAG	2 cut(s)	276, 366
HspAI	GCGC	2 cut(s)	148, 433
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	52, 76, 91, 353, 456
Lsp1109I	GCAGC	2 cut(s)	220, 313
LweI	GCATC	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	52, 207
MluCI	AATT	2 cut(s)	341, 440
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	5 cut(s)	127, 184, 214, 217, 438
MroXI	GAANNNNTTC	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	8, 233
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	6 cut(s)	11, 14, 91, 202, 211, 230
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	318
NlaIV	GGNNCC	2 cut(s)	61, 204
NmeAIII	GCCGAG	2 cut(s)	33, 244
NsbI	TGCGCA	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	7 cut(s)	7, 10, 13, 16, 87, 235, 303
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	61, 204
PspPI	GGNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	52
SatI	GCNGC	7 cut(s)	6, 9, 12, 15, 86, 234, 302
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	52, 207
SetI	ASST	7 cut(s)	52, 126, 175, 235, 263, 449, 482
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	2 cut(s)	341, 440
SsiI	CCGC	4 cut(s)	6, 14, 57, 86
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	291
TaqI	TCGA	3 cut(s)	209, 329, 456
TasI	AATT	2 cut(s)	341, 440
TauI	GCSGC	3 cut(s)	8, 17, 88
TfiI	GAWTC	1 cut(s)	490
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	4 cut(s)	8, 11, 233, 301
TspDTI	ATGAA	2 cut(s)	453, 465
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.