pycom02g10720

Protein FMP32, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002615
Physical Location & Seq
Forward (+)
7477114 .. 7478778
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10720.1

Sequence Viewer

Length: 714 bp
ATGGCCGCTGCCGCGGCTTGCAGACGGGTCGCCCAACTGGGGACCGGGTCGGGGATCGGATTATCCGGTTTCGGAGGGGCCGGTGGTGCCTCGAAAGCGGTGTCTCCGTCGTTGGAGTACAGGCATTTGGATTGCAGGCTGACTTCTCAGCTGGTCAAATCAAATGGAAAGCGGTTGTTTCTCGTCGATACATTAGCGTTGGTTAGGAGATTAGAGGGACAAGGCGTGCCCTCGAAGCACGCGGAGGCAATAACATCTGCCATTACTGAAGTTTTGAATGACAGCTTGGAAAATGTGTCTCATTCATTTGTTACAAAAGGAGAGATGCAGAAAACGGAGATGATCCAAGAATCCAACTTGTCCACATTCAAGTCCGAAATTCAAAGTGCGCAGGGACACCATTTTTCTTTGTTGCAACACGAGACTGAAAAACTTCGGAATGATATAGAGAAGATGCGGAGTGAATTGAGGTATGAAATCGACAAAGTTACTGCAGGACAGCGGTTGGACTTGAACCTGGAAAGAGGGAGGATACGAGAAGAGCTATCAAATCAGAATGCTGAAACCAATAACCTCACTAACAAACTTGATCGGGAAATTCATGCTTTAAGGGCTCAGGTGGAAGCAGCAAAATACGATGTCATAAAATACTGCATAGGTTCTCTTGTATCGATATCTGCTGTCGGTCTTGCTGTACTCCGTATCTTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1640

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

8.75

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC90-like PF07798 62 - 235 4.9e-61 Coiled-coil domain-containing protein 90-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 2 cut(s) 14, 242
AciI CCGC 8 cut(s) 6, 12, 14, 98, 172, 242, 457, 502
AclWI GGATC 2 cut(s) 62, 337
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 378, 597
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 119, 696
AfiI CCNNNNNNNGG 2 cut(s) 39, 51
AgsI TTSAA 4 cut(s) 277, 370, 383, 514
AjnI CCWGG 1 cut(s) 516
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 3 cut(s) 151, 285, 544
AluI AGCT 3 cut(s) 151, 285, 544
Alw26I GTCTC 3 cut(s) 108, 303, 416
AlwI GGATC 2 cut(s) 62, 337
AoxI GGCC 2 cut(s) 3, 78
ApeKI GCWGC 2 cut(s) 8, 626
ApoI RAATTY 2 cut(s) 378, 597
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 42, 78
AsuC2I CCSGG 1 cut(s) 46
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 616
BauI CACGAG 1 cut(s) 419
BbvI GCAGC 1 cut(s) 638
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 525
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 108, 303, 416
BfmI CTRYAG 1 cut(s) 492
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 5 cut(s) 6, 9, 12, 15, 627
BlsI GCNGC 5 cut(s) 7, 10, 13, 16, 628
Bme1390I CCNGG 2 cut(s) 46, 518
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 42, 78
BmiI GGNNCC 3 cut(s) 43, 79, 88
BmrFI CCNGG 2 cut(s) 46, 518
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 315, 444
BmuI ACTGGG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 51
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 518
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 39, 51
BseMII CTCAG 2 cut(s) 161, 629
BseNI ACTGG 1 cut(s) 42
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 1 cut(s) 638
Bsh1236I CGCG 2 cut(s) 14, 242
BshFI GGCC 2 cut(s) 5, 80
BshNI GGYRCC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 671
BsiSI CCGG 3 cut(s) 45, 66, 81
BslFI GGGAC 3 cut(s) 55, 231, 408
BslI CCNNNNNNNGG 2 cut(s) 39, 51
BsmAI GTCTC 3 cut(s) 108, 303, 416
BsmFI GGGAC 3 cut(s) 55, 231, 408
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 5, 80
Bsp1286I GDGCHC 2 cut(s) 231, 616
Bsp143I GATC 3 cut(s) 54, 342, 589
BspACI CCGC 8 cut(s) 6, 12, 14, 98, 172, 242, 457, 502
BspANI GGCC 2 cut(s) 5, 80
BspCNI CTCAG 2 cut(s) 160, 628
BspDI ATCGAT 1 cut(s) 671
BspFNI CGCG 2 cut(s) 14, 242
BspLI GGNNCC 3 cut(s) 43, 79, 88
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 2 cut(s) 62, 337
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 54, 342, 589
BssSI CACGAG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 534
BstC8I GCNNGC 4 cut(s) 19, 137, 227, 240
BstDEI CTNAG 2 cut(s) 147, 615
BstDSI CCRYGG 1 cut(s) 12
BstFNI CGCG 2 cut(s) 14, 242
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 57, 345, 592
BstMAI GTCTC 3 cut(s) 108, 303, 416
BstMBI GATC 3 cut(s) 54, 342, 589
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 86, 95, 235, 611
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 2 cut(s) 44, 516
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 2 cut(s) 14, 242
BstV1I GCAGC 1 cut(s) 638
Bsu15I ATCGAT 1 cut(s) 671
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 2 cut(s) 5, 80
BsuTUI ATCGAT 1 cut(s) 671
BtgI CCRYGG 1 cut(s) 12
Cac8I GCNNGC 4 cut(s) 19, 137, 227, 240
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 42, 78
Cfr42I CCGCGG 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 671
Csp6I GTAC 2 cut(s) 118, 695
CviAII CATG 1 cut(s) 602
CviJI RGCY 8 cut(s) 5, 17, 80, 139, 151, 285, 544, 614
CviKI_1 RGCY 8 cut(s) 5, 17, 80, 139, 151, 285, 544, 614
CviQI GTAC 2 cut(s) 118, 695
DdeI CTNAG 2 cut(s) 147, 615
DpnI GATC 3 cut(s) 56, 344, 591
DpnII GATC 3 cut(s) 54, 342, 589
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 616
Eco32I GATATC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 516
EcoRV GATATC 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 616
FaeI CATG 1 cut(s) 605
FaiI YATR 5 cut(s) 446, 474, 603, 644, 656
FaqI GGGAC 3 cut(s) 55, 231, 408
FatI CATG 1 cut(s) 601
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 15, 627
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 15, 627
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 1 cut(s) 390
GluI GCNGC 5 cut(s) 6, 9, 12, 15, 627
HaeIII GGCC 2 cut(s) 5, 80
HapII CCGG 3 cut(s) 45, 66, 81
HhaI GCGC 1 cut(s) 391
Hin1II CATG 1 cut(s) 605
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 1 cut(s) 350
HpaII CCGG 3 cut(s) 45, 66, 81
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 5 cut(s) 59, 74, 376, 438, 555
Hpy188III TCNNGA 1 cut(s) 593
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 2 cut(s) 112, 188
HpyCH4V TGCA 6 cut(s) 21, 135, 328, 415, 494, 654
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 86, 95, 235, 611
HpyF3I CTNAG 2 cut(s) 147, 615
Hsp92II CATG 1 cut(s) 605
HspAI GCGC 1 cut(s) 389
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 3 cut(s) 54, 342, 589
LguI GCTCTTC 1 cut(s) 534
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 2 cut(s) 315, 444
MaeIII GTNAC 2 cut(s) 310, 487
MalI GATC 3 cut(s) 56, 344, 591
MboI GATC 3 cut(s) 54, 342, 589
MboII GAAGA 2 cut(s) 463, 551
MhlI GDGCHC 2 cut(s) 231, 616
MluCI AATT 3 cut(s) 378, 464, 597
MmeI TCCRAC 3 cut(s) 93, 378, 486
MnlI CCTC 9 cut(s) 68, 100, 208, 238, 241, 462, 518, 522, 584
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 2 cut(s) 608, 707
MspA1I CMGCKG 4 cut(s) 8, 14, 151, 502
MspI CCGG 3 cut(s) 45, 66, 81
MspR9I CCNGG 2 cut(s) 46, 518
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 2 cut(s) 14, 242
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 86, 95, 235, 611
NciI CCSGG 1 cut(s) 46
NdeII GATC 3 cut(s) 54, 342, 589
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 3 cut(s) 43, 79, 88
NsbI TGCGCA 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 46
PkrI GCNGC 5 cut(s) 7, 10, 13, 16, 628
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 3 cut(s) 43, 79, 88
PspPI GGNCC 2 cut(s) 42, 78
PstI CTGCAG 1 cut(s) 496
PsyI GACNNNGTC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 2 cut(s) 119, 696
RsaNI GTAC 2 cut(s) 118, 695
SacII CCGCGG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 608, 707
SatI GCNGC 5 cut(s) 6, 9, 12, 15, 627
Sau3AI GATC 3 cut(s) 54, 342, 589
Sau96I GGNCC 2 cut(s) 42, 78
ScrFI CCNGG 2 cut(s) 46, 518
SduI GDGCHC 2 cut(s) 231, 616
SetI ASST 8 cut(s) 153, 287, 473, 519, 546, 576, 621, 661
SfaNI GCATC 2 cut(s) 315, 444
SfcI CTRYAG 1 cut(s) 492
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SinI GGWCC 1 cut(s) 42
Sse9I AATT 3 cut(s) 378, 464, 597
SsiI CCGC 8 cut(s) 6, 12, 14, 98, 172, 242, 457, 502
StyD4I CCNGG 2 cut(s) 44, 516
TaqI TCGA 5 cut(s) 92, 186, 233, 480, 671
TaqII GACCGA 1 cut(s) 674
TasI AATT 3 cut(s) 378, 464, 597
TatI WGTACW 2 cut(s) 117, 694
TauI GCSGC 3 cut(s) 8, 14, 17
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 608, 707
Tru9I TTAA 2 cut(s) 608, 707
TseI GCWGC 2 cut(s) 8, 626
TspDTI ATGAA 3 cut(s) 294, 489, 590
TspGWI ACGGA 3 cut(s) 96, 350, 689
Tth111I GACNNNGTC 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 2 cut(s) 378, 597
XmnI GAANNNNTTC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.