MD15G1249500.v1.1

Protein FMP32, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002615
Physical Location & Seq
Forward (+)
20811245 .. 20814583
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1249500.v1.1.491

Sequence Viewer

Length: 714 bp
ATGGCCGCTGCTGCGGCTTGCAGACGGGTCGCCCAATTGGGCACCGGGTCGGGGATCGGATTATCCGGTTTCGGAGGGCCCGGTGGTGCTTCGAGAACGGTGTCTCCGTCGGTGGAGTACAGGCATTTGGATTGCAGGCTGACTTCTCAGCTAGTCAAATCAAATGGAAAGCGGTTGTTTCTCGTCGATACATTAGCTCTGGTTAGGAGATTAGAGGGACAAGGCGTCCCCTCAAAGCACGCGGAGGCGATAACTGCTGCCATTACTGAAGTTTTGAATGACAGCTTGGAAAATGTGTCTCATTCATTTGTTACAAAAGGAGAGATGCAGAAAACGGAGATGATCCAAGAATCCAACTTGTCCAAATTCAAATCCGAAATTCAAAGTGCGCAGGGACACCATTTTTCTTTGTTGCAACACGAGACTGAAAAACTTCGGAATGATATAGAGAAGATGCGCAGTGAATTGAGGTATGAAATTGACAAAGTTACCGCAGGACAGCGGTTGGACTTGAACCTGGAAAGAGGGAGGATACGAGAAGAGCTATCTAATCAGAATGCTGAAACAAATAACCTCACTAACAAACTTGATCGGGAAATTCATGCTTTAAGGGCTCAGGTGGAAGCAGCAAAATACGATGTCATAAAATACTGCATAGGTACTCTTGTTTCGATATCTGCTGTCGGTCTTGCTGTACTCCGTATCCTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1640

Protein Analysis

238

Amino Acids

26.07

Weight (kDa)

8.76

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC90-like PF07798 62 - 235 2.3e-61 Coiled-coil domain-containing protein 90-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 390, 458
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 242
AciI CCGC 6 cut(s) 6, 14, 172, 242, 492, 502
AclWI GGATC 2 cut(s) 62, 337
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 365, 378, 597
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 119, 661, 696
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 4 cut(s) 277, 370, 383, 514
AhdI GACNNNNNGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 516
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 4 cut(s) 151, 197, 285, 544
AluI AGCT 4 cut(s) 151, 197, 285, 544
Alw26I GTCTC 3 cut(s) 108, 303, 416
AlwI GGATC 2 cut(s) 62, 337
AoxI GGCC 2 cut(s) 3, 77
ApaI GGGCCC 1 cut(s) 81
ApeKI GCWGC 4 cut(s) 8, 11, 257, 626
ApoI RAATTY 3 cut(s) 365, 378, 597
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 391, 459
AspS9I GGNCC 2 cut(s) 77, 78
AsuC2I CCSGG 2 cut(s) 46, 81
BaeGI GKGCMC 2 cut(s) 44, 81
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 81, 616
BauI CACGAG 1 cut(s) 419
BbvI GCAGC 2 cut(s) 244, 638
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 2 cut(s) 525, 713
BcnI CCSGG 2 cut(s) 46, 81
BcoDI GTCTC 3 cut(s) 108, 303, 416
BfaI CTAG 1 cut(s) 152
BfuI GTATCC 2 cut(s) 525, 713
BisI GCNGC 6 cut(s) 6, 9, 12, 15, 258, 627
BlsI GCNGC 6 cut(s) 7, 10, 13, 16, 259, 628
Bme1390I CCNGG 3 cut(s) 46, 81, 518
BmeRI GACNNNNNGTC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 77, 78
BmiI GGNNCC 2 cut(s) 43, 79
BmrFI CCNGG 3 cut(s) 46, 81, 518
BmsI GCATC 2 cut(s) 315, 444
Bpu10I CCTNAGC 1 cut(s) 615
BpuMI CCSGG 2 cut(s) 46, 81
BsaHI GRCGYC 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 518
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 161, 629
BseSI GKGCMC 2 cut(s) 44, 81
BseXI GCAGC 2 cut(s) 244, 638
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 79
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 45, 66, 81
BslFI GGGAC 3 cut(s) 212, 231, 408
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 3 cut(s) 108, 303, 416
BsmFI GGGAC 3 cut(s) 212, 231, 408
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 5, 79
Bsp120I GGGCCC 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 44, 81, 616
Bsp143I GATC 3 cut(s) 54, 342, 589
BspACI CCGC 6 cut(s) 6, 14, 172, 242, 492, 502
BspANI GGCC 2 cut(s) 5, 79
BspCNI CTCAG 2 cut(s) 160, 628
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 43, 79
BspPI GGATC 2 cut(s) 62, 337
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 41
BssMI GATC 3 cut(s) 54, 342, 589
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 534
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 19, 137, 240
BstDEI CTNAG 2 cut(s) 147, 615
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 2 cut(s) 391, 459
BstKTI GATC 3 cut(s) 57, 345, 592
BstMAI GTCTC 3 cut(s) 108, 303, 416
BstMBI GATC 3 cut(s) 54, 342, 589
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 254, 611
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 44, 79, 516
BstSLI GKGCMC 2 cut(s) 44, 81
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 244, 638
BsuI GTATCC 2 cut(s) 525, 713
BsuRI GGCC 2 cut(s) 5, 79
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 3 cut(s) 19, 137, 240
CfoI GCGC 2 cut(s) 391, 459
Cfr13I GGNCC 2 cut(s) 77, 78
CseI GACGC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 118, 660, 695
CviAII CATG 1 cut(s) 602
CviJI RGCY 9 cut(s) 5, 17, 79, 139, 151, 197, 285, 544, 614
CviKI_1 RGCY 9 cut(s) 5, 17, 79, 139, 151, 197, 285, 544, 614
CviQI GTAC 3 cut(s) 118, 660, 695
DdeI CTNAG 2 cut(s) 147, 615
DpnI GATC 3 cut(s) 56, 344, 591
DpnII GATC 3 cut(s) 54, 342, 589
DriI GACNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 534
Eam1105I GACNNNNNGTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 534
Eco24I GRGCYC 2 cut(s) 81, 616
Eco32I GATATC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 516
EcoRV GATATC 1 cut(s) 675
EcoT38I GRGCYC 2 cut(s) 81, 616
FaeI CATG 1 cut(s) 605
FaiI YATR 5 cut(s) 446, 474, 603, 644, 656
FaqI GGGAC 3 cut(s) 212, 231, 408
FatI CATG 1 cut(s) 601
Fnu4HI GCNGC 6 cut(s) 6, 9, 12, 15, 258, 627
FriOI GRGCYC 2 cut(s) 81, 616
Fsp4HI GCNGC 6 cut(s) 6, 9, 12, 15, 258, 627
FspBI CTAG 1 cut(s) 152
FspI TGCGCA 2 cut(s) 390, 458
GlaI GCGC 2 cut(s) 390, 458
GluI GCNGC 6 cut(s) 6, 9, 12, 15, 258, 627
HaeIII GGCC 2 cut(s) 5, 79
HapII CCGG 3 cut(s) 45, 66, 81
HgaI GACGC 1 cut(s) 214
HhaI GCGC 2 cut(s) 391, 459
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 1 cut(s) 605
Hin6I GCGC 2 cut(s) 389, 457
HinP1I GCGC 2 cut(s) 389, 457
HinfI GANTC 1 cut(s) 350
HpaII CCGG 3 cut(s) 45, 66, 81
Hpy188I TCNGA 5 cut(s) 59, 74, 376, 438, 555
Hpy188III TCNNGA 3 cut(s) 93, 593, 706
Hpy99I CGWCG 2 cut(s) 112, 188
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 5 cut(s) 21, 135, 328, 415, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 254, 611
HpyF3I CTNAG 2 cut(s) 147, 615
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 1 cut(s) 605
HspAI GCGC 2 cut(s) 389, 457
Kzo9I GATC 3 cut(s) 54, 342, 589
LguI GCTCTTC 1 cut(s) 534
Lsp1109I GCAGC 2 cut(s) 244, 638
LweI GCATC 2 cut(s) 315, 444
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 310, 487
MalI GATC 3 cut(s) 56, 344, 591
MboI GATC 3 cut(s) 54, 342, 589
MboII GAAGA 2 cut(s) 463, 551
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 3 cut(s) 44, 81, 616
MluCI AATT 6 cut(s) 35, 365, 378, 464, 477, 597
MmeI TCCRAC 2 cut(s) 378, 486
MnlI CCTC 8 cut(s) 68, 208, 238, 241, 462, 518, 522, 584
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 1 cut(s) 608
MspA1I CMGCKG 2 cut(s) 8, 502
MspI CCGG 3 cut(s) 45, 66, 81
MspR9I CCNGG 3 cut(s) 46, 81, 518
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 254, 611
NciI CCSGG 2 cut(s) 46, 81
NdeII GATC 3 cut(s) 54, 342, 589
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 2 cut(s) 43, 79
NsbI TGCGCA 2 cut(s) 390, 458
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 6 cut(s) 7, 10, 13, 16, 259, 628
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 43, 79
PspOMI GGGCCC 1 cut(s) 77
PspPI GGNCC 2 cut(s) 77, 78
RsaI GTAC 3 cut(s) 119, 661, 696
RsaNI GTAC 3 cut(s) 118, 660, 695
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 6 cut(s) 6, 9, 12, 15, 258, 627
Sau3AI GATC 3 cut(s) 54, 342, 589
Sau96I GGNCC 2 cut(s) 77, 78
ScrFI CCNGG 3 cut(s) 46, 81, 518
SduI GDGCHC 3 cut(s) 44, 81, 616
SetI ASST 9 cut(s) 153, 199, 287, 473, 519, 546, 576, 621, 661
SfaNI GCATC 2 cut(s) 315, 444
Sse9I AATT 6 cut(s) 35, 365, 378, 464, 477, 597
SsiI CCGC 6 cut(s) 6, 14, 172, 242, 492, 502
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 44, 79, 516
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 3 cut(s) 92, 186, 671
TaqII GACCGA 1 cut(s) 674
TasI AATT 6 cut(s) 35, 365, 378, 464, 477, 597
TatI WGTACW 2 cut(s) 117, 694
TauI GCSGC 2 cut(s) 8, 17
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 1 cut(s) 466
TseI GCWGC 4 cut(s) 8, 11, 257, 626
TspDTI ATGAA 3 cut(s) 294, 489, 590
TspGWI ACGGA 3 cut(s) 96, 350, 689
TspRI CASTG 1 cut(s) 466
XapI RAATTY 3 cut(s) 365, 378, 597
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.