Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002615

Physical Location & Seq

Genomic Coordinates Reverse (-)

80788545 .. 80791958

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCGCTGCTGCGGCGTGTAAACGGGTCGCCCAATCCGGGAGGATCGGGTCATCCGGGTTCGGAGCTCTCGGCGGTTCCAAACTGATGTCTCCGAGTTTGCCGCACAGGCATTTGGATTGCAGGCTCATTTCCTCCGAGCTTGTCAAATCTACTAATGGAAAGCGCCTTTTTCTTGTTGACACATTAGCTTTGGTTAGGAGATTAGAGGGGGCAAGGGTGCCCTCCAAGCACGCCGAGGCCATAACAGCTGCCATCACTGAAGTTTTGAATGACAGCTTGGAGAATGTGTCTCAGTCGTTTGTTTCCAAGGCAGAGCAGCAGAAGAATGAGATGATCCAAGACTCGAACTTGTCCAAATTCAAATCCCAAGTTCAAAGTTCTCAGGGACACCACTTTTCTTTGTTGCAACACGAGACTGAAAAACTTCGGAATGATATAGAGAAGATGCGGAATGAATTGAGGTATGAAATCGACAAAGTTACTGCAGGGCAAAGGTTGGACTTGAATCTTGAAAGGGGGAGGATACGGGAAGAGCTAGCAAATCAGAATGCTGAAACCAATAACCTTACTAACAAACTTGATCGGGAAATTCATGCTTTGCGTGCACAAGTGGAAGCCGCAAAATATGATGTCATAAAATACTGCATAGGTACACTTGTCTCCATATCTGCTGTTGGTCTTGCTGTACTACGTATCTTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1640

Protein Analysis

235

Amino Acids

26.02

Weight (kDa)

9.3

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC90-like	PF07798	60 - 233	2.4e-59	Coiled-coil domain-containing protein 90-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16460 AT2G16460
fragaria_vesca	FvH4_1g12200 FvH4_1g12200 FvH4_2g10260 FvH4_2g10260
malus_domestica	MD00G1040600.v1.1 MD02G1135900.v1.1 MD15G1249500.v1.1
prunus_persica	Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.8G086000_v2.0.a1
pyrus_communis	pycom02g10720 pycom05g04710 pycom15g21990
rosa_chinensis	RchiOBHm_Chr2g0099971 RchiOBHm_Chr6g0267481
rosa_laevigata	RLG00000014000 RLG00000016926
rosa_multiflora	Rmu_co8441933.1_g000001 Rmu_sc0013563.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142690 Rroxscaffold_7G00200740
rosa_rugosa	Rorug02G0084400 Rorug02G0084500 Rorug06G0033100
rosa_samantha	Rh2AG133500 Rh2BG137000 Rh2CG138500 Rh2DG138900 Rh6AG154400 Rh6BG154900 Rh6CG150200 Rh6DG140100
rosa_wichuraiana	Rw2G010380 Rw2G010400 Rw6G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	6 cut(s)	6, 14, 75, 104, 451, 621
AclWI	GGATC	2 cut(s)	53, 331
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	359, 591
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	2 cut(s)	655, 690
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	271, 364, 377, 508, 515
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	68, 142, 191, 251, 279, 538
AluI	AGCT	6 cut(s)	68, 142, 191, 251, 279, 538
Alw21I	GWGCWC	2 cut(s)	70, 610
Alw26I	GTCTC	4 cut(s)	96, 297, 410, 667
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	53, 331
AoxI	GGCC	2 cut(s)	3, 240
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	4 cut(s)	8, 11, 251, 319
ApoI	RAATTY	2 cut(s)	359, 591
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	168
AsuC2I	CCSGG	2 cut(s)	40, 58
AsuNHI	GCTAGC	1 cut(s)	538
BaeGI	GKGCMC	2 cut(s)	225, 610
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	70, 610
BbvI	GCAGC	2 cut(s)	238, 331
BccI	CCATC	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	519
BcnI	CCSGG	2 cut(s)	40, 58
BcoDI	GTCTC	4 cut(s)	96, 297, 410, 667
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	109
BisI	GCNGC	8 cut(s)	6, 9, 12, 15, 104, 252, 320, 621
BlsI	GCNGC	8 cut(s)	7, 10, 13, 16, 105, 253, 321, 622
Bme1390I	CCNGG	2 cut(s)	40, 58
BmiI	GGNNCC	2 cut(s)	79, 222
BmrFI	CCNGG	2 cut(s)	40, 58
BmsI	GCATC	1 cut(s)	438
BmtI	GCTAGC	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	40, 58
BsaAI	YACGTR	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	237, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	237, 309
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	308, 398
BseSI	GKGCMC	2 cut(s)	225, 610
BseXI	GCAGC	2 cut(s)	238, 331
BshFI	GGCC	2 cut(s)	5, 242
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	70, 610
BsiSI	CCGG	2 cut(s)	39, 57
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	4 cut(s)	96, 297, 410, 667
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	5, 242
Bsp1286I	GDGCHC	3 cut(s)	70, 225, 610
Bsp143I	GATC	3 cut(s)	45, 336, 583
BspACI	CCGC	6 cut(s)	6, 14, 75, 104, 451, 621
BspANI	GGCC	2 cut(s)	5, 242
BspCNI	CTCAG	2 cut(s)	307, 397
BspLI	GGNNCC	2 cut(s)	79, 222
BspMAI	CTGCAG	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	542
BspPI	GGATC	2 cut(s)	53, 331
BspQI	GCTCTTC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	237, 309
BssMI	GATC	3 cut(s)	45, 336, 583
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	4 cut(s)	125, 234, 540, 606
BstDEI	CTNAG	2 cut(s)	294, 384
BstF5I	GGATG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	48, 339, 586
BstMAI	GTCTC	4 cut(s)	96, 297, 410, 667
BstMBI	GATC	3 cut(s)	45, 336, 583
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 14, 109, 229, 248, 605
BstSCI	CCNGG	2 cut(s)	38, 56
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	2 cut(s)	225, 610
BstSNI	TACGTA	1 cut(s)	695
BstV1I	GCAGC	2 cut(s)	238, 331
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	5, 242
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	125, 234, 540, 606
CfoI	GCGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	654, 689
CviAII	CATG	1 cut(s)	596
CviQI	GTAC	2 cut(s)	654, 689
DdeI	CTNAG	2 cut(s)	294, 384
DpnI	GATC	3 cut(s)	47, 338, 585
DpnII	GATC	3 cut(s)	45, 336, 583
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	68
Eco105I	TACGTA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	599
FaiI	YATR	8 cut(s)	245, 440, 468, 597, 630, 638, 650, 668
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	1 cut(s)	595
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 104, 252, 320, 621
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 104, 252, 320, 621
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	8 cut(s)	6, 9, 12, 15, 104, 252, 320, 621
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	5, 242
HapII	CCGG	2 cut(s)	39, 57
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	599
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	344, 508
HpaII	CCGG	2 cut(s)	39, 57
Hpy166II	GTNNAC	4 cut(s)	23, 181, 608, 656
Hpy188I	TCNGA	5 cut(s)	65, 96, 139, 432, 549
Hpy188III	TCNNGA	3 cut(s)	512, 587, 700
Hpy8I	GTNNAC	4 cut(s)	23, 181, 608, 656
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	5 cut(s)	123, 409, 488, 608, 648
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 14, 109, 229, 248, 605
HpyF3I	CTNAG	2 cut(s)	294, 384
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	1 cut(s)	599
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	45, 336, 583
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	52, 70, 94, 109, 371, 474
Lsp1109I	GCAGC	2 cut(s)	238, 331
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	47, 338, 585
MboI	GATC	3 cut(s)	45, 336, 583
MboII	GAAGA	3 cut(s)	337, 457, 545
MhlI	GDGCHC	3 cut(s)	70, 225, 610
MluCI	AATT	3 cut(s)	359, 458, 591
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	36, 145, 202, 232, 235, 456, 516
MroXI	GAANNNNTTC	1 cut(s)	426
MspA1I	CMGCKG	2 cut(s)	8, 251
MspI	CCGG	2 cut(s)	39, 57
MspR9I	CCNGG	2 cut(s)	40, 58
Mva1269I	GAATGC	1 cut(s)	556
MwoI	GCNNNNNNNGC	6 cut(s)	11, 14, 109, 229, 248, 605
NciI	CCSGG	2 cut(s)	40, 58
NdeII	GATC	3 cut(s)	45, 336, 583
NheI	GCTAGC	1 cut(s)	538
NlaIII	CATG	1 cut(s)	599
NlaIV	GGNNCC	2 cut(s)	79, 222
NmeAIII	GCCGAG	2 cut(s)	51, 262
PciSI	GCTCTTC	1 cut(s)	528
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	8 cut(s)	7, 10, 13, 16, 105, 253, 321, 622
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	79, 222
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	655, 690
RsaNI	GTAC	2 cut(s)	654, 689
SacI	GAGCTC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	528
SatI	GCNGC	8 cut(s)	6, 9, 12, 15, 104, 252, 320, 621
Sau3AI	GATC	3 cut(s)	45, 336, 583
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	40, 58
SduI	GDGCHC	3 cut(s)	70, 225, 610
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	486
SnaBI	TACGTA	1 cut(s)	695
Sse9I	AATT	3 cut(s)	359, 458, 591
SsiI	CCGC	6 cut(s)	6, 14, 75, 104, 451, 621
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	38, 56
StyI	CCWWGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	2 cut(s)	347, 474
TasI	AATT	3 cut(s)	359, 458, 591
TatI	WGTACW	1 cut(s)	688
TauI	GCSGC	4 cut(s)	8, 17, 106, 623
TfiI	GAWTC	1 cut(s)	508
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	4 cut(s)	8, 11, 251, 319
TspDTI	ATGAA	3 cut(s)	471, 483, 584
TspRI	CASTG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	606
XapI	RAATTY	2 cut(s)	359, 591
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.