Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002615

Physical Location & Seq

Genomic Coordinates Reverse (-)

11902044 .. 11905093

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAATCTGCAAGCGCGTGCTTCAAACCGGTGCCGATTCCGCGTTTCTCTTCGCTAGCTTCCGACGAAACCTCTACTCGCCTTCTTCGACGGGCAACAATGGATATGGGCTCTTCAGCAGGCAGATTTCGGGACTGGTCAAACCGAATGGGAATCGCGCGTTTCTCGTGGACACGTTGGCTCTGGTGAGGGGTTTAGAGGCCAAAGGCGTGCCGACGAAGCAGGCGGAGGCGATCACAGCTGCGATCACTGAAGTTCTGAACGATAGCTTGGAGAATGTGGCTCATGCTTTTGTTTCCAAAGCGGAAATGCAGAAGGCTGGAATGCTACAAGAATCAAACCTGTCCAAGTTTAAATCTGAAGTTAAAAGCTCACAGGAGCACCATTTTTCGATGTTGCAACGTGAGACTGAAAAACTTAGGGGTGACATAGAGAAGATGCGTAGTGAATTGAGATACGAGATTGACAAAGTTACAGCCGGGCAGCGCTTGGATCTAAATCTTGAAAGAGGGCGCATACGCGATGAGCTAGCCAATCAAAATGCAGAAACCACCAATCTCACAAACAAACTTGACCGAGAAATTCATACATTAAGAGCTCAGTTGGAAGCTGCAAAGTATGACGTGATCAAATATTGCATAGGAACCCTTGTCTCCATATCTGCAGTTGGTCTCGCTGTACTTCGTATTTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1640

Protein Analysis

233

Amino Acids

25.76

Weight (kDa)

9.2

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16460 AT2G16460
fragaria_vesca	FvH4_1g12200 FvH4_1g12200 FvH4_2g10260 FvH4_2g10260
malus_domestica	MD00G1040600.v1.1 MD02G1135900.v1.1 MD15G1249500.v1.1
prunus_persica	Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.8G086000_v2.0.a1
pyrus_communis	pycom02g10720 pycom05g04710 pycom15g21990
rosa_chinensis	RchiOBHm_Chr2g0099971 RchiOBHm_Chr6g0267481
rosa_laevigata	RLG00000014000 RLG00000016926
rosa_multiflora	Rmu_co8441933.1_g000001 Rmu_sc0013563.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142690 Rroxscaffold_7G00200740
rosa_rugosa	Rorug02G0084400 Rorug02G0084500 Rorug06G0033100
rosa_samantha	Rh2AG133500 Rh2BG137000 Rh2CG138500 Rh2DG138900 Rh6AG154400 Rh6BG154900 Rh6CG150200 Rh6DG140100
rosa_wichuraiana	Rw2G010380 Rw2G010400 Rw6G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	5 cut(s)	18, 44, 159, 161, 522
AciI	CCGC	3 cut(s)	42, 227, 305
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	3 cut(s)	100, 273, 381
AfaI	GTAC	1 cut(s)	681
AfeI	AGCGCT	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	26, 506
AjiI	CACGTC	1 cut(s)	625
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	7 cut(s)	60, 242, 270, 372, 529, 599, 611
AluI	AGCT	7 cut(s)	60, 242, 270, 372, 529, 599, 611
Alw21I	GWGCWC	2 cut(s)	384, 601
Alw26I	GTCTC	3 cut(s)	401, 658, 677
AlwI	GGATC	1 cut(s)	501
Aor51HI	AGCGCT	1 cut(s)	488
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	242, 484, 611
ApoI	RAATTY	1 cut(s)	582
AsiGI	ACCGGT	1 cut(s)	29
AspLEI	GCGC	4 cut(s)	18, 161, 489, 516
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	199, 437
AsuNHI	GCTAGC	2 cut(s)	56, 529
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	114, 601
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	384, 601
BbvI	GCAGC	3 cut(s)	229, 496, 598
BclI	TGATCA	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	401, 658, 677
BfaI	CTAG	2 cut(s)	57, 530
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	490
BisI	GCNGC	3 cut(s)	243, 485, 612
BlsI	GCNGC	3 cut(s)	244, 486, 613
Bme1390I	CCNGG	1 cut(s)	481
BmgBI	CACGTC	1 cut(s)	625
BmiI	GGNNCC	2 cut(s)	34, 646
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	1 cut(s)	429
BmtI	GCTAGC	2 cut(s)	60, 533
BpuMI	CCSGG	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	498
BseJI	GATNNNNATC	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	229, 496, 598
Bsh1236I	CGCG	5 cut(s)	18, 44, 159, 161, 522
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	384, 601
BsiSI	CCGG	2 cut(s)	30, 480
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	3 cut(s)	401, 658, 677
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	677
Bsp1286I	GDGCHC	3 cut(s)	114, 384, 601
Bsp143I	GATC	4 cut(s)	234, 246, 493, 627
BspACI	CCGC	3 cut(s)	42, 227, 305
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	5 cut(s)	18, 44, 159, 161, 522
BspLI	GGNNCC	2 cut(s)	34, 646
BspMAI	CTGCAG	1 cut(s)	667
BspOI	GCTAGC	2 cut(s)	60, 533
BspPI	GGATC	1 cut(s)	501
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	4 cut(s)	234, 246, 493, 627
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	56, 119
BstC8I	GCNNGC	7 cut(s)	14, 20, 58, 122, 212, 225, 531
BstDEI	CTNAG	2 cut(s)	419, 600
BstFNI	CGCG	5 cut(s)	18, 44, 159, 161, 522
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	4 cut(s)	18, 161, 489, 516
BstKTI	GATC	4 cut(s)	237, 249, 496, 630
BstMAI	GTCTC	3 cut(s)	401, 658, 677
BstMBI	GATC	4 cut(s)	234, 246, 493, 627
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 220, 239
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	5 cut(s)	18, 44, 159, 161, 522
BstV1I	GCAGC	3 cut(s)	229, 496, 598
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	7 cut(s)	14, 20, 58, 122, 212, 225, 531
CfoI	GCGC	4 cut(s)	18, 161, 489, 516
Cfr10I	RCCGGY	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	680
CspAI	ACCGGT	1 cut(s)	29
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	2 cut(s)	419, 600
DpnI	GATC	4 cut(s)	236, 248, 495, 629
DpnII	GATC	4 cut(s)	234, 246, 493, 627
DraI	TTTAAA	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	56, 119
EarI	CTCTTC	2 cut(s)	56, 119
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	114, 601
Eco31I	GGTCTC	1 cut(s)	677
Eco47III	AGCGCT	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	3 cut(s)	100, 273, 381
EcoICRI	GAGCTC	1 cut(s)	599
EcoT38I	GRGCYC	2 cut(s)	114, 601
FaeI	CATG	1 cut(s)	290
FaiI	YATR	8 cut(s)	108, 288, 431, 518, 588, 621, 641, 659
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	3 cut(s)	243, 485, 612
FriOI	GRGCYC	2 cut(s)	114, 601
Fsp4HI	GCNGC	3 cut(s)	243, 485, 612
FspBI	CTAG	2 cut(s)	57, 530
GlaI	GCGC	4 cut(s)	17, 160, 488, 515
GluI	GCNGC	3 cut(s)	243, 485, 612
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	30, 480
HhaI	GCGC	4 cut(s)	18, 161, 489, 516
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	4 cut(s)	16, 159, 487, 514
HinP1I	GCGC	4 cut(s)	16, 159, 487, 514
HinfI	GANTC	3 cut(s)	38, 154, 335
HpaII	CCGG	2 cut(s)	30, 480
HphI	GGTGA	2 cut(s)	199, 437
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	65, 261, 361
Hpy188III	TCNNGA	2 cut(s)	132, 503
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	3 cut(s)	69, 94, 220
HpyAV	CCTTC	2 cut(s)	93, 310
HpyCH4IV	ACGT	3 cut(s)	176, 403, 624
HpyCH4V	TGCA	7 cut(s)	12, 313, 400, 545, 614, 639, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 220, 239
HpyF3I	CTNAG	2 cut(s)	419, 600
HpySE526I	ACGT	3 cut(s)	176, 403, 624
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	4 cut(s)	16, 159, 487, 514
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	234, 246, 493, 627
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	9 cut(s)	43, 106, 122, 170, 209, 306, 356, 362, 493
Lsp1109I	GCAGC	3 cut(s)	229, 496, 598
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	57, 530
MaeII	ACGT	3 cut(s)	176, 403, 624
MaeIII	GTNAC	2 cut(s)	425, 472
MalI	GATC	4 cut(s)	236, 248, 495, 629
MboI	GATC	4 cut(s)	234, 246, 493, 627
MboII	GAAGA	4 cut(s)	43, 78, 106, 448
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	3 cut(s)	114, 384, 601
MluCI	AATT	2 cut(s)	449, 582
MmeI	TCCRAC	2 cut(s)	88, 585
MnlI	CCTC	5 cut(s)	83, 183, 193, 223, 503
MseI	TTAA	3 cut(s)	354, 366, 593
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	30, 480
MspR9I	CCNGG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	330
MvnI	CGCG	5 cut(s)	18, 44, 159, 161, 522
MwoI	GCNNNNNNNGC	3 cut(s)	41, 220, 239
NciI	CCSGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	234, 246, 493, 627
NheI	GCTAGC	2 cut(s)	56, 529
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	34, 646
NmuCI	GTSAC	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	38, 154, 335
PinAI	ACCGGT	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	244, 486, 613
Psp124BI	GAGCTC	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	34, 646
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
SacI	GAGCTC	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	354, 366, 593
SatI	GCNGC	3 cut(s)	243, 485, 612
Sau3AI	GATC	4 cut(s)	234, 246, 493, 627
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	3 cut(s)	114, 384, 601
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	663
Sse9I	AATT	2 cut(s)	449, 582
SsiI	CCGC	3 cut(s)	42, 227, 305
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	2 cut(s)	57, 530
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	479
TaiI	ACGT	3 cut(s)	179, 406, 627
TaqI	TCGA	2 cut(s)	89, 392
TaqII	GACCGA	1 cut(s)	591
TasI	AATT	2 cut(s)	449, 582
TatI	WGTACW	1 cut(s)	679
TfiI	GAWTC	3 cut(s)	38, 154, 335
Tru1I	TTAA	3 cut(s)	354, 366, 593
Tru9I	TTAA	3 cut(s)	354, 366, 593
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	3 cut(s)	242, 484, 611
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	575
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	582
XspI	CTAG	2 cut(s)	57, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.