Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002615

Physical Location & Seq

Genomic Coordinates Forward (+)

5558991 .. 5561391

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGCTCTGCAAGCGGGTGCTTCAAACCGGTGCCGAATCGGCGTTTCGCTTCTCCGGCTTCCGACGAAACTTCTATGCGCCTTCCTCGACGGGCAACAGCGGATACGGACTCATGAGCAGGCAGATTTCGCAGCTGGTCAAACCGAACGGAAACCGCGCGTTTCTTGTCGACACGCTGGCTCTGGTCAGGGGTTTGGAGGCCAAAGGCGTGCCGACGAAGCAGGCGGAGGCCATTACAGCTGCGATCACTGAAGTTCTGAACGATAGCTTGGAGAATGTAGCTCATGCTTTTGTATCTAAATCCGAAATGCAACAGGCTGTAATGCTGCAAGAATCAAACCTGTCAAAGTTCAAATCCGAAGTACAGAGTTCACAGGAGCATCATTTTACAGTGTTGCAACGTGAAACTGAAAAACTTCGTGGTGACATAGAGAAGATGCGCAGTGAATTGAGGTACGAGATTGACAAAGTTACAGCAGGGCAGCGTTTGGATTTAAATCTTGAAAGAGGGCGCATACGCGACGAGCTTGCCAATCAAAATGCAGAAACAACCAATCTCACAAATAAACTTGACCGAGAAATTCATGCATTAAGAGCACAGGTGGAAACTGCAAAATATGAGGTGATCAAATATTGCATAGGTACCTTGGTCTCCATAACTGCTGTTGGACTTGCTGTAGTTCGTATTTTCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1640

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

9.07

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16460 AT2G16460
fragaria_vesca	FvH4_1g12200 FvH4_1g12200 FvH4_2g10260 FvH4_2g10260
malus_domestica	MD00G1040600.v1.1 MD02G1135900.v1.1 MD15G1249500.v1.1
prunus_persica	Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.7G164700_v2.0.a1 Prupe.8G086000_v2.0.a1
pyrus_communis	pycom02g10720 pycom05g04710 pycom15g21990
rosa_chinensis	RchiOBHm_Chr2g0099971 RchiOBHm_Chr6g0267481
rosa_laevigata	RLG00000014000 RLG00000016926
rosa_multiflora	Rmu_co8441933.1_g000001 Rmu_sc0013563.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142690 Rroxscaffold_7G00200740
rosa_rugosa	Rorug02G0084400 Rorug02G0084500 Rorug06G0033100
rosa_samantha	Rh2AG133500 Rh2BG137000 Rh2CG138500 Rh2DG138900 Rh6AG154400 Rh6BG154900 Rh6CG150200 Rh6DG140100
rosa_wichuraiana	Rw2G010380 Rw2G010400 Rw6G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	443
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	2 cut(s)	32, 644
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	3 cut(s)	159, 161, 522
AciI	CCGC	4 cut(s)	16, 102, 157, 227
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	3 cut(s)	366, 458, 646
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	26, 355, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	136, 242, 270, 284, 529
AluI	AGCT	5 cut(s)	136, 242, 270, 284, 529
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	658
AoxI	GGCC	2 cut(s)	201, 231
ApeKI	GCWGC	4 cut(s)	133, 242, 328, 484
ApoI	RAATTY	1 cut(s)	582
AsiGI	ACCGGT	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	417
Asp718I	GGTACC	1 cut(s)	644
AspLEI	GCGC	5 cut(s)	7, 82, 161, 444, 516
AsuHPI	GGTGA	2 cut(s)	437, 637
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BanI	GGYRCC	2 cut(s)	32, 644
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	4 cut(s)	145, 229, 315, 496
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciVI	GTATCC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	658
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	98
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	4 cut(s)	134, 243, 329, 485
BlsI	GCNGC	4 cut(s)	135, 244, 330, 486
BmiI	GGNNCC	2 cut(s)	34, 646
BmsI	GCATC	2 cut(s)	391, 429
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	648
BseJI	GATNNNNATC	1 cut(s)	498
BseXI	GCAGC	4 cut(s)	145, 229, 315, 496
Bsh1236I	CGCG	3 cut(s)	159, 161, 522
BshFI	GGCC	2 cut(s)	203, 233
BshNI	GGYRCC	2 cut(s)	32, 644
BshTI	ACCGGT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	30, 57
BsmAI	GTCTC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	203, 233
Bso31I	GGTCTC	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	246, 627
BspACI	CCGC	4 cut(s)	16, 102, 157, 227
BspANI	GGCC	2 cut(s)	203, 233
BspFNI	CGCG	3 cut(s)	159, 161, 522
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	34, 646
BspT107I	GGYRCC	2 cut(s)	32, 644
BspTNI	GGTCTC	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	2 cut(s)	246, 627
BssT1I	CCWWGG	1 cut(s)	648
Bst4CI	ACNGT	1 cut(s)	394
BstC8I	GCNNGC	6 cut(s)	14, 122, 180, 212, 225, 531
BstFNI	CGCG	3 cut(s)	159, 161, 522
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	5 cut(s)	7, 82, 161, 444, 516
BstKTI	GATC	2 cut(s)	249, 630
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	2 cut(s)	246, 627
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 41, 57, 130, 220, 239, 596
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	3 cut(s)	159, 161, 522
BstV1I	GCAGC	4 cut(s)	145, 229, 315, 496
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	203, 233
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	249, 399, 451
Cac8I	GCNNGC	6 cut(s)	14, 122, 180, 212, 225, 531
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	5 cut(s)	7, 82, 161, 444, 516
Cfr10I	RCCGGY	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	365, 457, 645
CspAI	ACCGGT	1 cut(s)	29
CviAII	CATG	3 cut(s)	115, 287, 587
CviQI	GTAC	3 cut(s)	365, 457, 645
DpnI	GATC	2 cut(s)	248, 629
DpnII	GATC	2 cut(s)	246, 627
DraI	TTTAAA	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	648
Eco31I	GGTCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	3 cut(s)	118, 290, 590
FatI	CATG	3 cut(s)	114, 286, 586
FauI	CCCGC	1 cut(s)	9
FbaI	TGATCA	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	4 cut(s)	134, 243, 329, 485
Fsp4HI	GCNGC	4 cut(s)	134, 243, 329, 485
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	5 cut(s)	6, 81, 160, 443, 515
GluI	GCNGC	4 cut(s)	134, 243, 329, 485
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	203, 233
HapII	CCGG	2 cut(s)	30, 57
HhaI	GCGC	5 cut(s)	7, 82, 161, 444, 516
Hin1II	CATG	3 cut(s)	118, 290, 590
Hin6I	GCGC	5 cut(s)	5, 80, 159, 442, 514
HinP1I	GCGC	5 cut(s)	5, 80, 159, 442, 514
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	38, 111, 335
HpaII	CCGG	2 cut(s)	30, 57
HphI	GGTGA	2 cut(s)	437, 637
Hpy166II	GTNNAC	2 cut(s)	172, 374
Hpy188I	TCNGA	4 cut(s)	65, 261, 307, 361
Hpy188III	TCNNGA	2 cut(s)	115, 503
Hpy8I	GTNNAC	2 cut(s)	172, 374
Hpy99I	CGWCG	4 cut(s)	69, 94, 220, 527
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	8 cut(s)	12, 313, 331, 400, 545, 590, 614, 639
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 41, 57, 130, 220, 239, 596
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	3 cut(s)	118, 290, 590
HspAI	GCGC	5 cut(s)	5, 80, 159, 442, 514
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	246, 627
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	145, 229, 315, 496
LweI	GCATC	2 cut(s)	391, 429
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	425, 472
MalI	GATC	2 cut(s)	248, 629
MboI	GATC	2 cut(s)	246, 627
MboII	GAAGA	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	2 cut(s)	449, 582
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	88, 649
MnlI	CCTC	6 cut(s)	97, 193, 223, 447, 503, 616
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	2 cut(s)	497, 593
MspA1I	CMGCKG	3 cut(s)	102, 136, 242
MspI	CCGG	2 cut(s)	30, 57
MvnI	CGCG	3 cut(s)	159, 161, 522
MwoI	GCNNNNNNNGC	7 cut(s)	13, 41, 57, 130, 220, 239, 596
NdeII	GATC	2 cut(s)	246, 627
NlaIII	CATG	3 cut(s)	118, 290, 590
NlaIV	GGNNCC	2 cut(s)	34, 646
NmuCI	GTSAC	1 cut(s)	425
NsbI	TGCGCA	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	592
PagI	TCATGA	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	38, 335
PinAI	ACCGGT	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	135, 244, 330, 486
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	34, 646
PvuII	CAGCTG	2 cut(s)	136, 242
RsaI	GTAC	3 cut(s)	366, 458, 646
RsaNI	GTAC	3 cut(s)	365, 457, 645
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	497, 593
SatI	GCNGC	4 cut(s)	134, 243, 329, 485
Sau3AI	GATC	2 cut(s)	246, 627
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	2 cut(s)	391, 429
SfcI	CTRYAG	1 cut(s)	678
SmiI	ATTTAAAT	1 cut(s)	498
Sse9I	AATT	2 cut(s)	449, 582
SsiI	CCGC	4 cut(s)	16, 102, 157, 227
SspI	AATATT	1 cut(s)	635
StyI	CCWWGG	1 cut(s)	648
SwaI	ATTTAAAT	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	89, 171
TaqII	GACCGA	1 cut(s)	591
TasI	AATT	2 cut(s)	449, 582
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	2 cut(s)	38, 335
Tru1I	TTAA	2 cut(s)	497, 593
Tru9I	TTAA	2 cut(s)	497, 593
TscAI	CASTG	3 cut(s)	256, 399, 451
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	4 cut(s)	133, 242, 328, 484
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	2 cut(s)	123, 165
TspRI	CASTG	3 cut(s)	256, 399, 451
XapI	RAATTY	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.