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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65540 |
| fragaria_vesca | FvH4_1g19490 FvH4_1g19490 |
| malus_domestica | MD01G1040900.v1.1 MD15G1310400.v1.1 |
| prunus_persica | Prupe.6G203300_v2.0.a1 |
| pyrus_communis | pycom01g06850 pycom15g27420 |
| rosa_chinensis | RchiOBHm_Chr2g0110871 RchiOBHm_Chr2g0110941 |
| rosa_laevigata | RLG00000017847 RLG00000017849 RLG00000017853 RLG00000017855 |
| rosa_multiflora | Rmu_sc0003994.1_g000015 Rmu_sc0003994.1_g000016 Rmu_sc0032518.1_g000001 Rmu_sc0032519.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00132780 Rroxscaffold_2G00132790 |
| rosa_rugosa | Rorug02G0170300 Rorug02G0170300 |
| rosa_samantha | Rh2AG222300 Rh2BG233100 Rh2BG233800 Rh2CG225100 Rh2CG225400 Rh2DG230300 |
| rosa_wichuraiana | Rw2G017180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1429 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 692 |
| AccII | CGCG | 3 cut(s) | 27, 195, 201 |
| AciI | CCGC | 9 cut(s) | 25, 27, 193, 199, 241, 252, 344, 971, 1448 |
| AclWI | GGATC | 3 cut(s) | 144, 172, 924 |
| AcoI | YGGCCR | 1 cut(s) | 22 |
| AcsI | RAATTY | 7 cut(s) | 334, 821, 1183, 1251, 1381, 1581, 1662 |
| AcuI | CTGAAG | 2 cut(s) | 307, 324 |
| AcyI | GRCGYC | 2 cut(s) | 372, 1426 |
| AfaI | GTAC | 3 cut(s) | 320, 562, 1464 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 132, 168, 692, 913, 1087, 1168, 1448 |
| AflIII | ACRYGT | 2 cut(s) | 315, 840 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 547, 864, 1478 |
| AjiI | CACGTC | 1 cut(s) | 316 |
| AjnI | CCWGG | 5 cut(s) | 74, 131, 479, 1220, 1482 |
| AluBI | AGCT | 8 cut(s) | 37, 49, 93, 469, 592, 1063, 1071, 1499 |
| AluI | AGCT | 8 cut(s) | 37, 49, 93, 469, 592, 1063, 1071, 1499 |
| Alw21I | GWGCWC | 1 cut(s) | 781 |
| Alw26I | GTCTC | 6 cut(s) | 9, 232, 277, 332, 496, 550 |
| Alw44I | GTGCAC | 1 cut(s) | 777 |
| AlwI | GGATC | 3 cut(s) | 144, 172, 924 |
| Ama87I | CYCGRG | 2 cut(s) | 50, 329 |
| AoxI | GGCC | 4 cut(s) | 22, 39, 219, 1189 |
| ApaLI | GTGCAC | 1 cut(s) | 777 |
| ApeKI | GCWGC | 9 cut(s) | 637, 1063, 1246, 1276, 1342, 1360, 1402, 1573, 1576 |
| ApoI | RAATTY | 7 cut(s) | 334, 821, 1183, 1251, 1381, 1581, 1662 |
| AseI | ATTAAT | 1 cut(s) | 1727 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 351, 468, 1157 |
| AspLEI | GCGC | 4 cut(s) | 72, 197, 203, 976 |
| AspS9I | GGNCC | 2 cut(s) | 1190, 1480 |
| AsuC2I | CCSGG | 1 cut(s) | 1000 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AvaI | CYCGRG | 2 cut(s) | 50, 329 |
| AvaII | GGWCC | 1 cut(s) | 1480 |
| AxyI | CCTNAGG | 1 cut(s) | 849 |
| BaeGI | GKGCMC | 1 cut(s) | 781 |
| BanII | GRGCYC | 2 cut(s) | 175, 1696 |
| BauI | CACGAG | 1 cut(s) | 1443 |
| BbsI | GAAGAC | 1 cut(s) | 1429 |
| Bbv12I | GWGCWC | 1 cut(s) | 781 |
| BbvI | GCAGC | 9 cut(s) | 649, 1050, 1258, 1288, 1354, 1372, 1414, 1585, 1588 |
| BccI | CCATC | 5 cut(s) | 695, 1208, 1239, 1441, 1510 |
| BceAI | ACGGC | 2 cut(s) | 37, 254 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 61, 95, 1309, 1343 |
| BciT130I | CCWGG | 5 cut(s) | 76, 133, 481, 1222, 1484 |
| BciVI | GTATCC | 2 cut(s) | 641, 996 |
| BclI | TGATCA | 1 cut(s) | 718 |
| BcnI | CCSGG | 1 cut(s) | 1000 |
| BcoDI | GTCTC | 6 cut(s) | 9, 232, 277, 332, 496, 550 |
| BfaI | CTAG | 4 cut(s) | 168, 665, 861, 1196 |
| BfmI | CTRYAG | 1 cut(s) | 936 |
| BfuI | GTATCC | 2 cut(s) | 641, 996 |
| BlpI | GCTNAGC | 1 cut(s) | 1067 |
| Bme1390I | CCNGG | 6 cut(s) | 76, 133, 481, 1000, 1222, 1484 |
| Bme18I | GGWCC | 1 cut(s) | 1480 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 547, 864, 1478 |
| BmeT110I | CYCGRG | 2 cut(s) | 50, 329 |
| BmgBI | CACGTC | 1 cut(s) | 316 |
| BmgT120I | GGNCC | 2 cut(s) | 1190, 1480 |
| BmiI | GGNNCC | 2 cut(s) | 1030, 1219 |
| BmrFI | CCNGG | 6 cut(s) | 76, 133, 481, 1000, 1222, 1484 |
| BmsI | GCATC | 3 cut(s) | 683, 1329, 1729 |
| BpiI | GAAGAC | 1 cut(s) | 1429 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 547, 579 |
| BpmI | CTGGAG | 3 cut(s) | 73, 549, 1204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 908 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1067 |
| BpuEI | CTTGAG | 1 cut(s) | 899 |
| BpuMI | CCSGG | 1 cut(s) | 1000 |
| BsaHI | GRCGYC | 2 cut(s) | 372, 1426 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 132 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 206, 236 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 132, 168, 692, 913, 1087, 1168, 1448 |
| Bse118I | RCCGGY | 1 cut(s) | 1679 |
| Bse1I | ACTGG | 1 cut(s) | 1700 |
| Bse21I | CCTNAGG | 1 cut(s) | 849 |
| Bse3DI | GCAATG | 1 cut(s) | 1596 |
| BseBI | CCWGG | 5 cut(s) | 76, 133, 481, 1222, 1484 |
| BseDI | CCNNGG | 2 cut(s) | 25, 132 |
| BseGI | GGATG | 1 cut(s) | 1219 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 132, 168, 692, 913, 1087, 1168, 1448 |
| BseMI | GCAATG | 1 cut(s) | 1596 |
| BseMII | CTCAG | 6 cut(s) | 188, 863, 1047, 1073, 1637, 1702 |
| BseNI | ACTGG | 1 cut(s) | 1700 |
| BseRI | GAGGAG | 4 cut(s) | 197, 584, 1431, 1749 |
| BseSI | GKGCMC | 1 cut(s) | 781 |
| BseX3I | CGGCCG | 1 cut(s) | 22 |
| BseXI | GCAGC | 9 cut(s) | 649, 1050, 1258, 1288, 1354, 1372, 1414, 1585, 1588 |
| Bsh1236I | CGCG | 3 cut(s) | 27, 195, 201 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 4 cut(s) | 24, 41, 221, 1191 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiHKAI | GWGCWC | 1 cut(s) | 781 |
| BsiHKCI | CYCGRG | 2 cut(s) | 50, 329 |
| BsiSI | CCGG | 2 cut(s) | 1000, 1680 |
| BslFI | GGGAC | 2 cut(s) | 149, 1601 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 132, 168, 692, 913, 1087, 1168, 1448 |
| BsmAI | GTCTC | 6 cut(s) | 9, 232, 277, 332, 496, 550 |
| BsmBI | CGTCTC | 4 cut(s) | 9, 232, 277, 550 |
| BsmFI | GGGAC | 2 cut(s) | 149, 1601 |
| BsmI | GAATGC | 3 cut(s) | 623, 1266, 1422 |
| BsnI | GGCC | 4 cut(s) | 24, 41, 221, 1191 |
| BsoBI | CYCGRG | 2 cut(s) | 50, 329 |
| Bsp1286I | GDGCHC | 3 cut(s) | 175, 781, 1696 |
| Bsp143I | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1067 |
| BspACI | CCGC | 9 cut(s) | 25, 27, 193, 199, 241, 252, 344, 971, 1448 |
| BspANI | GGCC | 4 cut(s) | 24, 41, 221, 1191 |
| BspCNI | CTCAG | 6 cut(s) | 187, 862, 1046, 1072, 1636, 1701 |
| BspFNI | CGCG | 3 cut(s) | 27, 195, 201 |
| BspHI | TCATGA | 2 cut(s) | 721, 961 |
| BspLI | GGNNCC | 2 cut(s) | 1030, 1219 |
| BspMAI | CTGCAG | 1 cut(s) | 940 |
| BspPI | GGATC | 3 cut(s) | 144, 172, 924 |
| BspQI | GCTCTTC | 2 cut(s) | 459, 627 |
| BsrDI | GCAATG | 1 cut(s) | 1596 |
| BsrFI | RCCGGY | 1 cut(s) | 1679 |
| BsrI | ACTGG | 1 cut(s) | 1700 |
| BssAI | RCCGGY | 1 cut(s) | 1679 |
| BssECI | CCNNGG | 2 cut(s) | 25, 132 |
| BssMI | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| BssNI | GRCGYC | 2 cut(s) | 372, 1426 |
| BssSI | CACGAG | 1 cut(s) | 1443 |
| Bst2BI | CACGAG | 1 cut(s) | 1443 |
| Bst2UI | CCWGG | 5 cut(s) | 76, 133, 481, 1222, 1484 |
| Bst4CI | ACNGT | 3 cut(s) | 764, 1171, 1272 |
| Bst6I | CTCTTC | 5 cut(s) | 215, 239, 459, 605, 627 |
| BstACI | GRCGYC | 2 cut(s) | 372, 1426 |
| BstC8I | GCNNGC | 7 cut(s) | 39, 43, 47, 199, 306, 594, 969 |
| BstDEI | CTNAG | 8 cut(s) | 174, 849, 908, 1033, 1059, 1067, 1623, 1688 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstF5I | GGATG | 1 cut(s) | 1219 |
| BstFNI | CGCG | 3 cut(s) | 27, 195, 201 |
| BstHHI | GCGC | 4 cut(s) | 72, 197, 203, 976 |
| BstKTI | GATC | 5 cut(s) | 152, 180, 721, 919, 1204 |
| BstMAI | GTCTC | 6 cut(s) | 9, 232, 277, 332, 496, 550 |
| BstMBI | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 76, 90, 883, 973, 1351, 1360, 1393, 1402, 1570 |
| BstNI | CCWGG | 5 cut(s) | 76, 133, 481, 1222, 1484 |
| BstSCI | CCNGG | 6 cut(s) | 74, 131, 479, 998, 1220, 1482 |
| BstSFI | CTRYAG | 1 cut(s) | 936 |
| BstSLI | GKGCMC | 1 cut(s) | 781 |
| BstUI | CGCG | 3 cut(s) | 27, 195, 201 |
| BstV1I | GCAGC | 9 cut(s) | 649, 1050, 1258, 1288, 1354, 1372, 1414, 1585, 1588 |
| BstV2I | GAAGAC | 1 cut(s) | 1429 |
| BstX2I | RGATCY | 1 cut(s) | 177 |
| BstYI | RGATCY | 1 cut(s) | 177 |
| BstZI | CGGCCG | 1 cut(s) | 22 |
| Bsu36I | CCTNAGG | 1 cut(s) | 849 |
| BsuI | GTATCC | 2 cut(s) | 641, 996 |
| BsuRI | GGCC | 4 cut(s) | 24, 41, 221, 1191 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtrI | CACGTC | 1 cut(s) | 316 |
| BtsCI | GGATG | 1 cut(s) | 1219 |
| BtsI | GCAGTG | 1 cut(s) | 1136 |
| BtsIMutI | CAGTG | 2 cut(s) | 1136, 1707 |
| Cac8I | GCNNGC | 7 cut(s) | 39, 43, 47, 199, 306, 594, 969 |
| CciI | TCATGA | 2 cut(s) | 721, 961 |
| CfoI | GCGC | 4 cut(s) | 72, 197, 203, 976 |
| Cfr10I | RCCGGY | 1 cut(s) | 1679 |
| Cfr13I | GGNCC | 2 cut(s) | 1190, 1480 |
| Cfr42I | CCGCGG | 1 cut(s) | 28 |
| CseI | GACGC | 1 cut(s) | 380 |
| CsiI | ACCWGGT | 1 cut(s) | 479 |
| Csp6I | GTAC | 3 cut(s) | 319, 561, 1463 |
| CviAII | CATG | 7 cut(s) | 145, 722, 913, 962, 1256, 1459, 1754 |
| CviQI | GTAC | 3 cut(s) | 319, 561, 1463 |
| DdeI | CTNAG | 8 cut(s) | 174, 849, 908, 1033, 1059, 1067, 1623, 1688 |
| DpnI | GATC | 5 cut(s) | 151, 179, 720, 918, 1203 |
| DpnII | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| DraI | TTTAAA | 1 cut(s) | 457 |
| DriI | GACNNNNNGTC | 3 cut(s) | 547, 864, 1478 |
| EaeI | YGGCCR | 1 cut(s) | 22 |
| EagI | CGGCCG | 1 cut(s) | 22 |
| Eam1104I | CTCTTC | 5 cut(s) | 215, 239, 459, 605, 627 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 547, 864, 1478 |
| EarI | CTCTTC | 5 cut(s) | 215, 239, 459, 605, 627 |
| EciI | GGCGGA | 1 cut(s) | 230 |
| EclXI | CGGCCG | 1 cut(s) | 22 |
| Eco147I | AGGCCT | 1 cut(s) | 221 |
| Eco24I | GRGCYC | 2 cut(s) | 175, 1696 |
| Eco47I | GGWCC | 1 cut(s) | 1480 |
| Eco52I | CGGCCG | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 2 cut(s) | 307, 324 |
| Eco81I | CCTNAGG | 1 cut(s) | 849 |
| Eco88I | CYCGRG | 2 cut(s) | 50, 329 |
| EcoRI | GAATTC | 1 cut(s) | 334 |
| EcoRII | CCWGG | 5 cut(s) | 74, 131, 479, 1220, 1482 |
| EcoT22I | ATGCAT | 1 cut(s) | 676 |
| EcoT38I | GRGCYC | 2 cut(s) | 175, 1696 |
| Esp3I | CGTCTC | 4 cut(s) | 9, 232, 277, 550 |
| FaeI | CATG | 7 cut(s) | 148, 725, 916, 965, 1259, 1462, 1757 |
| FaqI | GGGAC | 2 cut(s) | 149, 1601 |
| FatI | CATG | 7 cut(s) | 144, 721, 912, 961, 1255, 1458, 1753 |
| FauI | CCCGC | 2 cut(s) | 206, 1441 |
| FbaI | TGATCA | 1 cut(s) | 718 |
| FokI | GGATG | 1 cut(s) | 1226 |
| FriOI | GRGCYC | 2 cut(s) | 175, 1696 |
| FspBI | CTAG | 4 cut(s) | 168, 665, 861, 1196 |
| GlaI | GCGC | 4 cut(s) | 71, 196, 202, 975 |
| GsuI | CTGGAG | 3 cut(s) | 73, 549, 1204 |
| HaeIII | GGCC | 4 cut(s) | 24, 41, 221, 1191 |
| HapII | CCGG | 2 cut(s) | 1000, 1680 |
| HgaI | GACGC | 1 cut(s) | 380 |
| HhaI | GCGC | 4 cut(s) | 72, 197, 203, 976 |
| Hin1I | GRCGYC | 2 cut(s) | 372, 1426 |
| Hin1II | CATG | 7 cut(s) | 148, 725, 916, 965, 1259, 1462, 1757 |
| Hin6I | GCGC | 4 cut(s) | 70, 195, 201, 974 |
| HinP1I | GCGC | 4 cut(s) | 70, 195, 201, 974 |
| HincII | GTYRAC | 1 cut(s) | 1430 |
| HindII | GTYRAC | 1 cut(s) | 1430 |
| HindIII | AAGCTT | 1 cut(s) | 590 |
| HpaII | CCGG | 2 cut(s) | 1000, 1680 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 5 cut(s) | 109, 319, 753, 779, 1430 |
| Hpy8I | GTNNAC | 5 cut(s) | 109, 319, 753, 779, 1430 |
| Hpy99I | CGWCG | 1 cut(s) | 23 |
| HpyAV | CCTTC | 9 cut(s) | 112, 151, 191, 341, 1019, 1172, 1540, 1699, 1706 |
| HpyCH4III | ACNGT | 3 cut(s) | 764, 1171, 1272 |
| HpyCH4IV | ACGT | 6 cut(s) | 63, 315, 559, 755, 842, 1426 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 76, 90, 883, 973, 1351, 1360, 1393, 1402, 1570 |
| HpyF3I | CTNAG | 8 cut(s) | 174, 849, 908, 1033, 1059, 1067, 1623, 1688 |
| HpySE526I | ACGT | 6 cut(s) | 63, 315, 559, 755, 842, 1426 |
| Hsp92I | GRCGYC | 2 cut(s) | 372, 1426 |
| Hsp92II | CATG | 7 cut(s) | 148, 725, 916, 965, 1259, 1462, 1757 |
| HspAI | GCGC | 4 cut(s) | 70, 195, 201, 974 |
| Ksp22I | TGATCA | 1 cut(s) | 718 |
| KspI | CCGCGG | 1 cut(s) | 28 |
| Kzo9I | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| LguI | GCTCTTC | 2 cut(s) | 459, 627 |
| LmnI | GCTCC | 2 cut(s) | 1223, 1504 |
| Lsp1109I | GCAGC | 9 cut(s) | 649, 1050, 1258, 1288, 1354, 1372, 1414, 1585, 1588 |
| LweI | GCATC | 3 cut(s) | 683, 1329, 1729 |
| MabI | ACCWGGT | 1 cut(s) | 479 |
| MaeI | CTAG | 4 cut(s) | 168, 665, 861, 1196 |
| MaeII | ACGT | 6 cut(s) | 63, 315, 559, 755, 842, 1426 |
| MaeIII | GTNAC | 5 cut(s) | 368, 843, 1118, 1266, 1509 |
| MalI | GATC | 5 cut(s) | 151, 179, 720, 918, 1203 |
| MboI | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| MboII | GAAGA | 8 cut(s) | 202, 226, 330, 476, 622, 644, 1165, 1434 |
| MfeI | CAATTG | 1 cut(s) | 1140 |
| MflI | RGATCY | 1 cut(s) | 177 |
| MhlI | GDGCHC | 3 cut(s) | 175, 781, 1696 |
| MlyI | GAGTC | 6 cut(s) | 62, 80, 131, 242, 557, 874 |
| MmeI | TCCRAC | 3 cut(s) | 177, 211, 300 |
| Mph1103I | ATGCAT | 1 cut(s) | 676 |
| MroXI | GAANNNNTTC | 3 cut(s) | 351, 468, 1157 |
| MseI | TTAA | 3 cut(s) | 456, 588, 1727 |
| MslI | CAYNNNNRTG | 1 cut(s) | 309 |
| MspA1I | CMGCKG | 3 cut(s) | 27, 344, 1063 |
| MspI | CCGG | 2 cut(s) | 1000, 1680 |
| MspR9I | CCNGG | 6 cut(s) | 76, 133, 481, 1000, 1222, 1484 |
| MunI | CAATTG | 1 cut(s) | 1140 |
| Mva1269I | GAATGC | 3 cut(s) | 623, 1266, 1422 |
| MvaI | CCWGG | 5 cut(s) | 76, 133, 481, 1222, 1484 |
| MvnI | CGCG | 3 cut(s) | 27, 195, 201 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 76, 90, 883, 973, 1351, 1360, 1393, 1402, 1570 |
| NciI | CCSGG | 1 cut(s) | 1000 |
| NdeII | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| NlaIII | CATG | 7 cut(s) | 148, 725, 916, 965, 1259, 1462, 1757 |
| NlaIV | GGNNCC | 2 cut(s) | 1030, 1219 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 2 cut(s) | 368, 1266 |
| NsiI | ATGCAT | 1 cut(s) | 676 |
| PaeR7I | CTCGAG | 2 cut(s) | 50, 329 |
| PagI | TCATGA | 2 cut(s) | 721, 961 |
| PceI | AGGCCT | 1 cut(s) | 221 |
| PciSI | GCTCTTC | 2 cut(s) | 459, 627 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 312 |
| PctI | GAATGC | 3 cut(s) | 623, 1266, 1422 |
| PdmI | GAANNNNTTC | 3 cut(s) | 351, 468, 1157 |
| PfeI | GAWTC | 6 cut(s) | 382, 425, 1348, 1597, 1633, 1757 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 692 |
| PfoI | TCCNGGA | 1 cut(s) | 1220 |
| PleI | GAGTC | 6 cut(s) | 61, 80, 131, 242, 556, 873 |
| PpsI | GAGTC | 6 cut(s) | 61, 80, 131, 242, 556, 873 |
| PshBI | ATTAAT | 1 cut(s) | 1727 |
| Psp6I | CCWGG | 5 cut(s) | 74, 131, 479, 1220, 1482 |
| PspGI | CCWGG | 5 cut(s) | 74, 131, 479, 1220, 1482 |
| PspN4I | GGNNCC | 2 cut(s) | 1030, 1219 |
| PspPI | GGNCC | 2 cut(s) | 1190, 1480 |
| PspXI | VCTCGAGB | 1 cut(s) | 50 |
| PstI | CTGCAG | 1 cut(s) | 940 |
| PsuI | RGATCY | 1 cut(s) | 177 |
| PvuII | CAGCTG | 1 cut(s) | 1063 |
| RsaI | GTAC | 3 cut(s) | 320, 562, 1464 |
| RsaNI | GTAC | 3 cut(s) | 319, 561, 1463 |
| RseI | CAYNNNNRTG | 1 cut(s) | 309 |
| SacII | CCGCGG | 1 cut(s) | 28 |
| SapI | GCTCTTC | 2 cut(s) | 459, 627 |
| SaqAI | TTAA | 3 cut(s) | 456, 588, 1727 |
| Sau3AI | GATC | 5 cut(s) | 149, 177, 718, 916, 1201 |
| Sau96I | GGNCC | 2 cut(s) | 1190, 1480 |
| SchI | GAGTC | 6 cut(s) | 62, 80, 131, 242, 557, 874 |
| ScrFI | CCNGG | 6 cut(s) | 76, 133, 481, 1000, 1222, 1484 |
| SduI | GDGCHC | 3 cut(s) | 175, 781, 1696 |
| SexAI | ACCWGGT | 1 cut(s) | 479 |
| SfaNI | GCATC | 3 cut(s) | 683, 1329, 1729 |
| SfcI | CTRYAG | 1 cut(s) | 936 |
| Sfr274I | CTCGAG | 2 cut(s) | 50, 329 |
| Sfr303I | CCGCGG | 1 cut(s) | 28 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1679 |
| SgrBI | CCGCGG | 1 cut(s) | 28 |
| SinI | GGWCC | 1 cut(s) | 1480 |
| SlaI | CTCGAG | 2 cut(s) | 50, 329 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 309 |
| SmlI | CTYRAG | 3 cut(s) | 50, 329, 878 |
| SmoI | CTYRAG | 3 cut(s) | 50, 329, 878 |
| SseBI | AGGCCT | 1 cut(s) | 221 |
| SsiI | CCGC | 9 cut(s) | 25, 27, 193, 199, 241, 252, 344, 971, 1448 |
| SspMI | CTAG | 4 cut(s) | 168, 665, 861, 1196 |
| StuI | AGGCCT | 1 cut(s) | 221 |
| StyD4I | CCNGG | 6 cut(s) | 74, 131, 479, 998, 1220, 1482 |
| TaaI | ACNGT | 3 cut(s) | 764, 1171, 1272 |
| TaiI | ACGT | 6 cut(s) | 66, 318, 562, 758, 845, 1429 |
| TaqI | TCGA | 9 cut(s) | 51, 213, 330, 413, 1300, 1319, 1595, 1696, 1748 |
| TaqII | GACCGA | 1 cut(s) | 558 |
| TatI | WGTACW | 1 cut(s) | 318 |
| TauI | GCSGC | 3 cut(s) | 27, 30, 974 |
| TfiI | GAWTC | 6 cut(s) | 382, 425, 1348, 1597, 1633, 1757 |
| Tru1I | TTAA | 3 cut(s) | 456, 588, 1727 |
| Tru9I | TTAA | 3 cut(s) | 456, 588, 1727 |
| TscAI | CASTG | 2 cut(s) | 1136, 1707 |
| TseFI | GTSAC | 2 cut(s) | 368, 1266 |
| TseI | GCWGC | 9 cut(s) | 637, 1063, 1246, 1276, 1342, 1360, 1402, 1573, 1576 |
| Tsp45I | GTSAC | 2 cut(s) | 368, 1266 |
| TspDTI | ATGAA | 8 cut(s) | 133, 477, 614, 738, 806, 1244, 1734, 1779 |
| TspGWI | ACGGA | 2 cut(s) | 214, 1070 |
| TspRI | CASTG | 2 cut(s) | 1136, 1707 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 692 |
| VneI | GTGCAC | 1 cut(s) | 777 |
| VpaK11BI | GGWCC | 1 cut(s) | 1480 |
| VspI | ATTAAT | 1 cut(s) | 1727 |
| XapI | RAATTY | 7 cut(s) | 334, 821, 1183, 1251, 1381, 1581, 1662 |
| XhoI | CTCGAG | 2 cut(s) | 50, 329 |
| XmnI | GAANNNNTTC | 3 cut(s) | 351, 468, 1157 |
| XspI | CTAG | 4 cut(s) | 168, 665, 861, 1196 |
| ZraI | GACGTC | 1 cut(s) | 1427 |
| Zsp2I | ATGCAT | 1 cut(s) | 676 |