RLG00000017853

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005483
Physical Location & Seq
Reverse (-)
22285959 .. 22287478
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017853

Sequence Viewer

Length: 492 bp
ATGGATCAAGGAGGAAGCTTATATCGTGGAAAGAATGGGTCTGCAGGGACCAAAAGTTGTCTTACTCATGAGCAAGCGGCACAGTTATCTCAAAAGGTAATAGCCCGGATGCTGACAAATGTGGGATTTGAAGGTTCCTCTGAAGTTCCAATTGAAGTTTTCTCTCAGTTGCTAAGCTGTCATATCTGTAAATTGGGTAGCAGCTTGAAAGTTCTTACTGATAGTTACAGAAAGCTTTGTTCAACAATTGAACTATTAAAGATGTTCCTTCAGACAGTGGGATATAGGAATTTCCATCAACAAAGTCAGCAGCAAATTCATGGAATGCAGTCACAGTTGCAGCCACAGCACCAGAACCCTGTTCGACTACCCCAACCAAAGGGACTAGCTTTATCTTTTCCGAATCTTCGATCTGTCGATAAAAGGATTGGTGTTTTGTTGTTGGATCATCGCATTACCATCGATCTGCCCATAAAAGGTGATCCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

164

Amino Acids

18.15

Weight (kDa)

9.61

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 25 - 95 5.5e-06 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 3 cut(s) 12, 453, 476
AcsI RAATTY 2 cut(s) 289, 315
AcuI CTGAAG 2 cut(s) 162, 254
AfiI CCNNNNNNNGG 2 cut(s) 379, 476
AgsI TTSAA 5 cut(s) 131, 155, 208, 243, 251
AluBI AGCT 5 cut(s) 18, 177, 204, 235, 389
AluI AGCT 5 cut(s) 18, 177, 204, 235, 389
AlwI GGATC 3 cut(s) 12, 453, 476
ApeKI GCWGC 3 cut(s) 201, 310, 340
ApoI RAATTY 2 cut(s) 289, 315
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 213, 322, 352
BccI CCATC 2 cut(s) 303, 467
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BcnI CCSGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 4 cut(s) 78, 202, 311, 341
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 4 cut(s) 79, 203, 312, 342
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 49, 136
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 476
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 379, 476
BseMII CTCAG 1 cut(s) 179
BseXI GCAGC 3 cut(s) 213, 322, 352
BshVI ATCGAT 1 cut(s) 462
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 2 cut(s) 61, 396
BslI CCNNNNNNNGG 2 cut(s) 379, 476
BsmFI GGGAC 2 cut(s) 61, 396
BsmI GAATGC 1 cut(s) 330
Bsp143I GATC 5 cut(s) 4, 410, 445, 463, 481
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 178
BspDI ATCGAT 1 cut(s) 462
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 49, 136
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 3 cut(s) 12, 453, 476
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 5 cut(s) 4, 410, 445, 463, 481
Bst4CI ACNGT 3 cut(s) 84, 277, 336
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 165, 173
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 5 cut(s) 7, 413, 448, 466, 484
BstMBI GATC 5 cut(s) 4, 410, 445, 463, 481
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 213, 322, 352
Bsu15I ATCGAT 1 cut(s) 462
BsuTUI ATCGAT 1 cut(s) 462
BtgZI GCGATG 1 cut(s) 434
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 48
ClaI ATCGAT 1 cut(s) 462
CviAII CATG 2 cut(s) 68, 320
CviJI RGCY 7 cut(s) 18, 104, 177, 204, 235, 343, 389
CviKI_1 RGCY 7 cut(s) 18, 104, 177, 204, 235, 343, 389
DdeI CTNAG 2 cut(s) 165, 173
DpnI GATC 5 cut(s) 6, 412, 447, 465, 483
DpnII GATC 5 cut(s) 4, 410, 445, 463, 481
Eco47I GGWCC 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 162, 254
FaeI CATG 2 cut(s) 71, 323
FaiI YATR 6 cut(s) 22, 69, 183, 285, 321, 473
FaqI GGGAC 2 cut(s) 61, 396
FatI CATG 2 cut(s) 67, 319
Fnu4HI GCNGC 4 cut(s) 78, 202, 311, 341
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 4 cut(s) 78, 202, 311, 341
FspBI CTAG 1 cut(s) 386
GluI GCNGC 4 cut(s) 78, 202, 311, 341
HapII CCGG 1 cut(s) 106
Hin1II CATG 2 cut(s) 71, 323
HindIII AAGCTT 2 cut(s) 16, 233
HinfI GANTC 1 cut(s) 403
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 491
Hpy188I TCNGA 3 cut(s) 142, 273, 402
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 125, 278
HpyCH4III ACNGT 3 cut(s) 84, 277, 336
HpyCH4V TGCA 3 cut(s) 44, 328, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 165, 173
Hsp92II CATG 2 cut(s) 71, 323
Kzo9I GATC 5 cut(s) 4, 410, 445, 463, 481
LpnPI CCDG 4 cut(s) 30, 119, 365, 372
Lsp1109I GCAGC 3 cut(s) 213, 322, 352
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 224, 330
MalI GATC 5 cut(s) 6, 412, 447, 465, 483
MboI GATC 5 cut(s) 4, 410, 445, 463, 481
MboII GAAGA 1 cut(s) 398
MfeI CAATTG 2 cut(s) 150, 246
MluCI AATT 5 cut(s) 150, 191, 246, 289, 315
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 2 cut(s) 5, 148
MseI TTAA 1 cut(s) 257
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 2 cut(s) 150, 246
Mva1269I GAATGC 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 106
NdeII GATC 5 cut(s) 4, 410, 445, 463, 481
NlaIII CATG 2 cut(s) 71, 323
NlaIV GGNNCC 2 cut(s) 49, 136
NmuCI GTSAC 1 cut(s) 330
PagI TCATGA 1 cut(s) 67
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 403
PkrI GCNGC 4 cut(s) 79, 203, 312, 342
PspN4I GGNNCC 2 cut(s) 49, 136
PspPI GGNCC 1 cut(s) 48
PstI CTGCAG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 4 cut(s) 78, 202, 311, 341
Sau3AI GATC 5 cut(s) 4, 410, 445, 463, 481
Sau96I GGNCC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 106
SetI ASST 8 cut(s) 20, 99, 136, 179, 206, 237, 391, 481
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 48
Sse9I AATT 5 cut(s) 150, 191, 246, 289, 315
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 84, 277, 336
TaqI TCGA 4 cut(s) 364, 409, 417, 462
TasI AATT 5 cut(s) 150, 191, 246, 289, 315
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 403
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 3 cut(s) 201, 310, 340
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 2 cut(s) 289, 315
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.