RLG00000017847

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005483
Physical Location & Seq
Reverse (-)
22166339 .. 22170239
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017847

Sequence Viewer

Length: 1227 bp
ATGAAGACGAGGACGGAGACGAGAGAGGGGAGGAAGAAGAGGTTAAAAGAAAAGAGAGTAGGCGTGCAGCTTGCCTTTCCCAGAGACCCATACGACCCCATTTCCCATTCTTTTTGCTCCACTGAGAATCTCCATTCCCCAAACAACAAACTGAATACTTCCAGACTTTCTTCGATTGAGTCCAACTTCGACTCTTTTGAGTCTTCATGCAATCTCTGCCCTTCTGCAACTCAGTCTTGGATTGATGATCTTGAAGATTTGCAGCTGCATGCTGATGACGTGTACTTCAGTCTCGAGAATTCTTCCGCAGAAGGAGTTCAGGTTCAACAGCGCGACGCGTCCAAGATTCAATCAAAAACAGCTTTTGGTTTTGGATCACGATATGGAGAATCTGAAATTGATAATAAGCCACCGAGGTCTAAAAATGAAGAGCTGCCTGAGACCTGGTATAATCAGGTTATTGAGAGACATAGGGCTAGCAAACCACATAGGTTGTCATCAGTAGACCGAGAATCAGACAAACGCACTCCAGAGGAGATGTCTGCTTATCTTAAGCTTGCTGTGAAGCATAAGAAAAAGTGTTTAGCATTCAAAGAAGATCATGCACTTCCACCTATGAATAGAGCGCAAGAAGATAAACAATTTGAATTTTATGGAGTTCTTGATATGTTACCTCAGGCTTTGACTAGGAGTCCCGTTATGCTTGAGAGGCTTGGTATAAGACCTGAATACCGTAGCATGGATCAAGGAGGAAGCTTACATTATGGAAAGAATGGGTTTGCAGGGAACAAAAGTTGTCTTACTCATGAGCAAGCGGCACAGTTATCTCAAAAGGTAATAGCCTGGATGCTGACAAATGTGGGATTTGAAGGTTCCTCAGAAGTTCCAATTGAAGTTTTCTCTCAGTTGCTAAGCTGTCATATCCGTAAATTGGGTAGCAGCTTGAAAGTTCTTACTGATAGTTACAGAAAGCAGTGTTCAGCAATTGAACTATTGAAGATGTTCCTTCAAATAGTGGGATATAGTGGTTGTGCCTATATCGAGACAAATGCATCCACAGATGCAGCAAATGCAGCAGATTCAGCAAATGCAGCAAATTGTCCAATCGAAGAATGTGCCATTTCAACAACAGCAGCAGATAAAAAGAATGTGAAGACGTCAACCATCTACTCCTCGTGCTGGTATGGACATGGTACAGGACAGACCAATGGTCCAGGTCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

409

Amino Acids

45.61

Weight (kDa)

6.84

Isoelectric Point (pI)

55.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1160
AccI GTMKAC 1 cut(s) 504
AccII CGCG 2 cut(s) 333, 338
AciI CCGC 2 cut(s) 306, 815
AclWI GGATC 2 cut(s) 382, 750
AcsI RAATTY 2 cut(s) 298, 647
AcuI CTGAAG 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 1157
AfaI GTAC 2 cut(s) 284, 1195
AfiI CCNNNNNNNGG 3 cut(s) 739, 931, 1179
AflII CTTAAG 1 cut(s) 551
AflIII ACRYGT 2 cut(s) 279, 336
AhdI GACNNNNNGTC 2 cut(s) 690, 1209
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 3 cut(s) 443, 842, 1213
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 8 cut(s) 70, 265, 362, 433, 556, 756, 915, 942
AluI AGCT 8 cut(s) 70, 265, 362, 433, 556, 756, 915, 942
Alw26I GTCTC 6 cut(s) 11, 78, 296, 434, 460, 1037
AlwI GGATC 2 cut(s) 382, 750
Ama87I CYCGRG 1 cut(s) 293
ApeKI GCWGC 9 cut(s) 67, 262, 265, 433, 939, 1064, 1073, 1091, 1133
ApoI RAATTY 2 cut(s) 298, 647
Asp700I GAANNNNTTC 2 cut(s) 315, 1001
AspLEI GCGC 2 cut(s) 333, 628
AspS9I GGNCC 1 cut(s) 1211
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 1211
AxyI CCTNAGG 1 cut(s) 675
BauI CACGAG 1 cut(s) 1174
BbsI GAAGAC 3 cut(s) 11, 195, 1160
BbvI GCAGC 9 cut(s) 79, 252, 274, 420, 951, 1076, 1085, 1103, 1145
BccI CCATC 1 cut(s) 1172
BcgI CGANNNNNNTGC 4 cut(s) 1031, 1065, 1097, 1131
BciT130I CCWGG 3 cut(s) 445, 844, 1215
BcoDI GTCTC 6 cut(s) 11, 78, 296, 434, 460, 1037
BfaI CTAG 2 cut(s) 477, 687
BfrI CTTAAG 1 cut(s) 551
BlpI GCTNAGC 1 cut(s) 911
Bme1390I CCNGG 3 cut(s) 445, 844, 1215
Bme18I GGWCC 1 cut(s) 1211
BmeRI GACNNNNNGTC 2 cut(s) 690, 1209
BmeT110I CYCGRG 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 1211
BmiI GGNNCC 1 cut(s) 874
BmrFI CCNGG 3 cut(s) 445, 844, 1215
BmsI GCATC 3 cut(s) 837, 1051, 1061
BmtI GCTAGC 1 cut(s) 480
BpiI GAAGAC 3 cut(s) 11, 195, 1160
BpmI CTGGAG 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 1 cut(s) 725
BsaHI GRCGYC 1 cut(s) 1157
BsaI GGTCTC 2 cut(s) 78, 434
BsaJI CCNNGG 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 3 cut(s) 739, 931, 1179
Bse21I CCTNAGG 1 cut(s) 675
BseBI CCWGG 3 cut(s) 445, 844, 1215
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 2 cut(s) 852, 1052
BseLI CCNNNNNNNGG 3 cut(s) 739, 931, 1179
BseMII CTCAG 6 cut(s) 114, 245, 429, 689, 891, 917
BseRI GAGGAG 2 cut(s) 548, 1162
BseXI GCAGC 9 cut(s) 79, 252, 274, 420, 951, 1076, 1085, 1103, 1145
BsgI GTGCAG 1 cut(s) 86
Bsh1236I CGCG 2 cut(s) 333, 338
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 3 cut(s) 739, 931, 1179
BsmAI GTCTC 6 cut(s) 11, 78, 296, 434, 460, 1037
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 678
BsmI GAATGC 1 cut(s) 587
Bso31I GGTCTC 2 cut(s) 78, 434
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 4 cut(s) 247, 374, 598, 742
Bsp1720I GCTNAGC 1 cut(s) 911
BspACI CCGC 2 cut(s) 306, 815
BspCNI CTCAG 6 cut(s) 115, 244, 430, 688, 890, 916
BspFNI CGCG 2 cut(s) 333, 338
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 1 cut(s) 874
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 2 cut(s) 382, 750
BspQI GCTCTTC 1 cut(s) 423
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 2 cut(s) 78, 434
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 4 cut(s) 247, 374, 598, 742
BssNI GRCGYC 1 cut(s) 1157
BssSI CACGAG 1 cut(s) 1174
Bst2BI CACGAG 1 cut(s) 1174
Bst2UI CCWGG 3 cut(s) 445, 844, 1215
Bst4CI ACNGT 2 cut(s) 734, 822
Bst6I CTCTTC 2 cut(s) 32, 423
BstACI GRCGYC 1 cut(s) 1157
BstAFI CTTAAG 1 cut(s) 551
BstAPI GCANNNNNTGC 2 cut(s) 216, 1070
BstC8I GCNNGC 6 cut(s) 65, 72, 270, 478, 558, 813
BstDEI CTNAG 7 cut(s) 123, 231, 438, 675, 877, 903, 911
BstF5I GGATG 2 cut(s) 852, 1052
BstFNI CGCG 2 cut(s) 333, 338
BstHHI GCGC 2 cut(s) 333, 628
BstKTI GATC 4 cut(s) 250, 377, 601, 745
BstMAI GTCTC 6 cut(s) 11, 78, 296, 434, 460, 1037
BstMBI GATC 4 cut(s) 247, 374, 598, 742
BstMWI GCNNNNNNNGC 6 cut(s) 216, 709, 1070, 1073, 1082, 1091
BstNI CCWGG 3 cut(s) 445, 844, 1215
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 443, 842, 1213
BstUI CGCG 2 cut(s) 333, 338
BstV1I GCAGC 9 cut(s) 79, 252, 274, 420, 951, 1076, 1085, 1103, 1145
BstV2I GAAGAC 3 cut(s) 11, 195, 1160
Bsu36I CCTNAGG 1 cut(s) 675
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 852, 1052
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 2 cut(s) 120, 980
Cac8I GCNNGC 6 cut(s) 65, 72, 270, 478, 558, 813
CciI TCATGA 1 cut(s) 805
CfoI GCGC 2 cut(s) 333, 628
Cfr13I GGNCC 1 cut(s) 1211
CseI GACGC 2 cut(s) 327, 344
CsiI ACCWGGT 1 cut(s) 443
Csp6I GTAC 2 cut(s) 283, 1194
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 6 cut(s) 207, 269, 602, 739, 806, 1190
CviQI GTAC 2 cut(s) 283, 1194
DdeI CTNAG 7 cut(s) 123, 231, 438, 675, 877, 903, 911
DpnI GATC 4 cut(s) 249, 376, 600, 744
DpnII GATC 4 cut(s) 247, 374, 598, 742
DriI GACNNNNNGTC 2 cut(s) 690, 1209
Eam1104I CTCTTC 2 cut(s) 32, 423
Eam1105I GACNNNNNGTC 2 cut(s) 690, 1209
EarI CTCTTC 2 cut(s) 32, 423
Eco31I GGTCTC 2 cut(s) 78, 434
Eco47I GGWCC 1 cut(s) 1211
Eco57I CTGAAG 1 cut(s) 271
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 3 cut(s) 443, 842, 1213
EcoT22I ATGCAT 1 cut(s) 1054
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 6 cut(s) 210, 272, 605, 742, 809, 1193
FaqI GGGAC 1 cut(s) 678
FatI CATG 6 cut(s) 206, 268, 601, 738, 805, 1189
FblI GTMKAC 1 cut(s) 504
FokI GGATG 2 cut(s) 859, 1039
FspBI CTAG 2 cut(s) 477, 687
GlaI GCGC 2 cut(s) 332, 627
GsuI CTGGAG 1 cut(s) 513
HgaI GACGC 2 cut(s) 327, 344
HhaI GCGC 2 cut(s) 333, 628
Hin1I GRCGYC 1 cut(s) 1157
Hin1II CATG 6 cut(s) 210, 272, 605, 742, 809, 1193
Hin6I GCGC 2 cut(s) 331, 626
HinP1I GCGC 2 cut(s) 331, 626
HincII GTYRAC 1 cut(s) 1161
HindII GTYRAC 1 cut(s) 1161
HindIII AAGCTT 2 cut(s) 554, 754
HinfI GANTC 9 cut(s) 127, 179, 191, 200, 346, 389, 512, 691, 1079
Hpy166II GTNNAC 3 cut(s) 283, 505, 1161
Hpy188I TCNGA 3 cut(s) 394, 517, 880
Hpy8I GTNNAC 3 cut(s) 283, 505, 1161
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 231, 305, 863, 1016
HpyCH4III ACNGT 2 cut(s) 734, 822
HpyCH4IV ACGT 2 cut(s) 279, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 216, 709, 1070, 1073, 1082, 1091
HpyF3I CTNAG 7 cut(s) 123, 231, 438, 675, 877, 903, 911
HpySE526I ACGT 2 cut(s) 279, 1157
Hsp92I GRCGYC 1 cut(s) 1157
Hsp92II CATG 6 cut(s) 210, 272, 605, 742, 809, 1193
HspAI GCGC 2 cut(s) 331, 626
Kzo9I GATC 4 cut(s) 247, 374, 598, 742
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 9 cut(s) 79, 252, 274, 420, 951, 1076, 1085, 1103, 1145
LweI GCATC 3 cut(s) 837, 1051, 1061
MabI ACCWGGT 1 cut(s) 443
MaeI CTAG 2 cut(s) 477, 687
MaeII ACGT 2 cut(s) 279, 1157
MaeIII GTNAC 2 cut(s) 669, 962
MalI GATC 4 cut(s) 249, 376, 600, 744
MboI GATC 4 cut(s) 247, 374, 598, 742
MfeI CAATTG 2 cut(s) 888, 984
MluCI AATT 8 cut(s) 298, 396, 641, 647, 888, 929, 984, 1096
MluI ACGCGT 1 cut(s) 336
MlyI GAGTC 4 cut(s) 185, 188, 209, 700
MmeI TCCRAC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 1054
MroXI GAANNNNTTC 2 cut(s) 315, 1001
MseI TTAA 2 cut(s) 44, 552
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 265
MspCI CTTAAG 1 cut(s) 551
MspR9I CCNGG 3 cut(s) 445, 844, 1215
MunI CAATTG 2 cut(s) 888, 984
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 3 cut(s) 445, 844, 1215
MvnI CGCG 2 cut(s) 333, 338
MwoI GCNNNNNNNGC 6 cut(s) 216, 709, 1070, 1073, 1082, 1091
NdeII GATC 4 cut(s) 247, 374, 598, 742
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 6 cut(s) 210, 272, 605, 742, 809, 1193
NlaIV GGNNCC 1 cut(s) 874
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 1 cut(s) 272
PaeI GCATGC 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 423
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 315, 1001
PfeI GAWTC 5 cut(s) 127, 346, 389, 512, 1079
PleI GAGTC 4 cut(s) 185, 187, 208, 699
PpsI GAGTC 4 cut(s) 185, 187, 208, 699
Psp6I CCWGG 3 cut(s) 443, 842, 1213
PspGI CCWGG 3 cut(s) 443, 842, 1213
PspN4I GGNNCC 1 cut(s) 874
PspPI GGNCC 1 cut(s) 1211
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 2 cut(s) 284, 1195
RsaNI GTAC 2 cut(s) 283, 1194
RseI CAYNNNNRTG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 44, 552
Sau3AI GATC 4 cut(s) 247, 374, 598, 742
Sau96I GGNCC 1 cut(s) 1211
SchI GAGTC 4 cut(s) 185, 188, 209, 700
ScrFI CCNGG 3 cut(s) 445, 844, 1215
SexAI ACCWGGT 1 cut(s) 443
SfaNI GCATC 3 cut(s) 837, 1051, 1061
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 1211
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 3 cut(s) 293, 551, 704
SmoI CTYRAG 3 cut(s) 293, 551, 704
SphI GCATGC 1 cut(s) 272
Sse9I AATT 8 cut(s) 298, 396, 641, 647, 888, 929, 984, 1096
SsiI CCGC 2 cut(s) 306, 815
SspMI CTAG 2 cut(s) 477, 687
StyD4I CCNGG 3 cut(s) 443, 842, 1213
TaaI ACNGT 2 cut(s) 734, 822
TaiI ACGT 2 cut(s) 282, 1160
TaqI TCGA 5 cut(s) 173, 189, 294, 1041, 1107
TaqII GACCGA 1 cut(s) 522
TasI AATT 8 cut(s) 298, 396, 641, 647, 888, 929, 984, 1096
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 5 cut(s) 127, 346, 389, 512, 1079
Tru1I TTAA 2 cut(s) 44, 552
Tru9I TTAA 2 cut(s) 44, 552
TscAI CASTG 2 cut(s) 127, 980
TseI GCWGC 9 cut(s) 67, 262, 265, 433, 939, 1064, 1073, 1091, 1133
TspDTI ATGAA 4 cut(s) 17, 195, 441, 632
TspGWI ACGGA 2 cut(s) 29, 914
TspRI CASTG 2 cut(s) 127, 980
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 1211
XapI RAATTY 2 cut(s) 298, 647
XceI RCATGY 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 2 cut(s) 315, 1001
XspI CTAG 2 cut(s) 477, 687
ZraI GACGTC 1 cut(s) 1158
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.