MD01G1040900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
13779765 .. 13784151
4387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1040900.v1.1.491

Sequence Viewer

Length: 1803 bp
ATGGCTCTACTTGGGGACGACGGTCGTGGTTACGAACTCGCCTGCCAACTCGAATCCTGCAACGTCTGGCGCACATGGCTCGGCGATTCCACCTACGCCATCTTCGCCCCCTTCCTCATTTCCCCTTCAACCTGGGAAGCTTTCATGGACTCCAAATCTAGGCCTCACCTCCATCTCCAACTCCGCGCTCGAGCTCTTCTTTTCGATAAGGCCTGCGTTTCCCTCTTCCTCCACCCCAATTCCTCCACCTCCTCCTCTTCTTCTTCAATCGCCGTTTCCAAGCTCAATCCCAATTATTTGCAGCTCCACCCGGACGACGTCTACTTCACTCTAGATAATTCGTCTCAGGATGGGGTTCAAGTTCAACAGCGTGACGCTTCGGTGCCGTCCAAGGTTCAATCTAAAGCAGCTTTTGGTGCTGGATCAAGATATGGAGAATCTGAAATTGATAACATATCATTGAGATTCAAAAATGGAGAGCTGCCTGAAACATGGTATAATCAGTTTATTGAGAGATATAGAATGAGCAAACCCTATAGGTTGTCTTCGGTGGAGCGAGAATCAGAGAAACGTACCCCAGAGGAGATGTCTGCTTACCTTAAGCTTCTTGAGAGTCATAAGAAAAGACGAGTAGCTTTCAAAGAAAATCCAAATATGGGATATGGAAATCCCATCCAAGATGCATCACATATGAATCCAAGTTCTCTTTTAGATGGTTCAGTTGATAGTGAAACATCTTTTTTCCCGGAAACAATGTTTACATTCAACTGTGTTCCTGATAGTGCACTTCCACCTTTGAATAGAGTGGGTGACAACAAAAAAGTGGAATGTTATGGAGTTCTTGATACATTGCCTCAGATAATGACTAGGAGTCCCGTTATGCTTGAGAGGCTTGGCATCAGGCCTGAATACCTCAGCATGGAACAAGGAGGAATCTTACATCGCGGAAAAAATGCTTCTGGAGGGAACAAAAAATGTCTTAGTCAAGAGCAAGCAACACAGTTATCTCAAAAGGTAGTAGCTAGGATGATGACAAATATTGGGTTTGAAGGTACTACAGAAGTTCCAATTGATGTTTTCTCTCAGTTACTAAGCTGCCATATCCTGAAGTTGGGTGGCAGCTTGAAACTTCTTGCTGATAGTTACAGAAAGCAGTGCTCAGCCCTTGAACTGCTAAAGATGTTCCTTCAAACTGTGGGATATGGTAATTTTGGTGCTCTGGTGGAGCAAGTCAAAGATGGCTCCAAGAATTTTCAGCAAACTCAGCAGCAAATTCACGGAATCCAGTCTCAGTTGCAGCCACAGCACCAGAATCTTATTCGACTACCCCAACAAGCCCGACAAATGCATCCACAGGTGCAACAAATTGCCCATTCCAAAAACGTGCCTTTACAGCAGCAGCAGCAGTTAGAAAGAATGCGAAGACGTCAACCATCCACTCCTCGCACGGGTATGGATATGGAGAAGGATAGACCAATGGTACAGGTCAAGATTGAAGCCCCATCAGAGTTACCCATGGATGGTAATGCCTTCAACAGTTTCAATAGCAGACATCCACAGATGCAGTTCAGGCAGCAGCAAATTCCTCCAATGTCGAATCTTACAATGTCAAATGTCCACGCTCAGTCGGGCAATCAATTTAGACAGATGGCTTCCCAAATTCCTCAAGTCCAAGCACAGAACATGAGTGTTCTGAGGGCTCCACCCGTGAAGGTGGAAGGATTCCAGGAATTGATGGGCGGAGATACTTCATCAAAGCATGACTCCGATGAAAATAGATTGACCTCTCCCTCAAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

67.57

Weight (kDa)

8.73

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 321, 1429
AccB1I GGYRCC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 321
AccII CGCG 2 cut(s) 186, 945
AciI CCGC 3 cut(s) 184, 945, 1740
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 4 cut(s) 1249, 1272, 1581, 1659
AcuI CTGAAG 1 cut(s) 1127
AcyI GRCGYC 2 cut(s) 318, 1426
AfaI GTAC 3 cut(s) 574, 1054, 1482
AfiI CCNNNNNNNGG 6 cut(s) 159, 656, 919, 1111, 1448, 1520
AflII CTTAAG 1 cut(s) 599
AhdI GACNNNNNGTC 1 cut(s) 870
AjnI CCWGG 2 cut(s) 131, 1725
Alw21I GWGCWC 4 cut(s) 196, 787, 1160, 1219
Alw26I GTCTC 2 cut(s) 348, 1293
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 1 cut(s) 430
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 3 cut(s) 161, 210, 902
ApaLI GTGCAC 1 cut(s) 783
ApoI RAATTY 4 cut(s) 1249, 1272, 1581, 1659
AspLEI GCGC 2 cut(s) 72, 188
AsuC2I CCSGG 2 cut(s) 311, 746
AsuHPI GGTGA 2 cut(s) 158, 821
AvaI CYCGRG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 2 cut(s) 196, 1702
BbsI GAAGAC 2 cut(s) 537, 1429
Bbv12I GWGCWC 4 cut(s) 196, 787, 1160, 1219
BbvCI CCTCAGC 1 cut(s) 914
BceAI ACGGC 2 cut(s) 257, 370
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 2 cut(s) 133, 1727
BcnI CCSGG 2 cut(s) 311, 746
BcoDI GTCTC 2 cut(s) 348, 1293
BfaI CTAG 4 cut(s) 159, 332, 867, 1023
BfmI CTRYAG 2 cut(s) 535, 1056
BfrI CTTAAG 1 cut(s) 599
BlpI GCTNAGC 1 cut(s) 1159
Bme1390I CCNGG 4 cut(s) 133, 311, 746, 1727
BmeRI GACNNNNNGTC 1 cut(s) 870
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 3 cut(s) 384, 1243, 1701
BmrFI CCNGG 4 cut(s) 133, 311, 746, 1727
BmsI GCATC 5 cut(s) 670, 692, 906, 1357, 1551
BoxI GACNNNNGTC 1 cut(s) 21
BpiI GAAGAC 2 cut(s) 537, 1429
BpmI CTGGAG 1 cut(s) 981
Bpu10I CCTNAGC 1 cut(s) 914
Bpu1102I GCTNAGC 1 cut(s) 1159
BpuEI CTTGAG 4 cut(s) 629, 905, 1650, 1777
BpuMI CCSGG 2 cut(s) 311, 746
BsaHI GRCGYC 2 cut(s) 318, 1426
BsaJI CCNNGG 3 cut(s) 132, 390, 1515
Bsc4I CCNNNNNNNGG 6 cut(s) 159, 656, 919, 1111, 1448, 1520
Bse1I ACTGG 1 cut(s) 1285
Bse3DI GCAATG 1 cut(s) 848
BseBI CCWGG 2 cut(s) 133, 1727
BseDI CCNNGG 3 cut(s) 132, 390, 1515
BseGI GGATG 7 cut(s) 355, 672, 1032, 1348, 1433, 1525, 1552
BseLI CCNNNNNNNGG 6 cut(s) 159, 656, 919, 1111, 1448, 1520
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 9 cut(s) 359, 869, 928, 1097, 1173, 1277, 1304, 1637, 1685
BseNI ACTGG 1 cut(s) 1285
BseRI GAGGAG 4 cut(s) 241, 244, 596, 1431
BseSI GKGCMC 1 cut(s) 787
Bsh1236I CGCG 2 cut(s) 186, 945
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 3 cut(s) 163, 212, 904
BshNI GGYRCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 4 cut(s) 196, 787, 1160, 1219
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 311, 746
BslFI GGGAC 2 cut(s) 29, 858
BslI CCNNNNNNNGG 6 cut(s) 159, 656, 919, 1111, 1448, 1520
BsmAI GTCTC 2 cut(s) 348, 1293
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 29, 858
BsmI GAATGC 1 cut(s) 1422
BsnI GGCC 3 cut(s) 163, 212, 904
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 5 cut(s) 196, 787, 1160, 1219, 1702
Bsp143I GATC 1 cut(s) 422
Bsp1720I GCTNAGC 1 cut(s) 1159
Bsp19I CCATGG 1 cut(s) 1515
BspACI CCGC 3 cut(s) 184, 945, 1740
BspANI GGCC 3 cut(s) 163, 212, 904
BspCNI CTCAG 9 cut(s) 358, 868, 927, 1096, 1172, 1276, 1303, 1636, 1686
BspFNI CGCG 2 cut(s) 186, 945
BspLI GGNNCC 3 cut(s) 384, 1243, 1701
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 382
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 848
BsrI ACTGG 1 cut(s) 1285
BssECI CCNNGG 3 cut(s) 132, 390, 1515
BssMI GATC 1 cut(s) 422
BssNI GRCGYC 2 cut(s) 318, 1426
BssT1I CCWWGG 2 cut(s) 390, 1515
Bst2UI CCWGG 2 cut(s) 133, 1727
Bst4CI ACNGT 5 cut(s) 23, 770, 1002, 1195, 1538
Bst6I CTCTTC 3 cut(s) 201, 230, 262
BstACI GRCGYC 2 cut(s) 318, 1426
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 43, 214, 993
BstDSI CCRYGG 1 cut(s) 1515
BstF5I GGATG 7 cut(s) 355, 672, 1032, 1348, 1433, 1525, 1552
BstFNI CGCG 2 cut(s) 186, 945
BstHHI GCGC 2 cut(s) 72, 188
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 2 cut(s) 348, 1293
BstMBI GATC 1 cut(s) 422
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 9 cut(s) 76, 104, 416, 889, 1264, 1303, 1393, 1402, 1570
BstNI CCWGG 2 cut(s) 133, 1727
BstPAI GACNNNNGTC 1 cut(s) 21
BstSCI CCNGG 4 cut(s) 131, 309, 744, 1725
BstSFI CTRYAG 2 cut(s) 535, 1056
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 2 cut(s) 186, 945
BstV2I GAAGAC 2 cut(s) 537, 1429
BsuRI GGCC 3 cut(s) 163, 212, 904
BtgI CCRYGG 1 cut(s) 1515
BtgZI GCGATG 1 cut(s) 926
BtsCI GGATG 7 cut(s) 355, 672, 1032, 1348, 1433, 1525, 1552
BtsI GCAGTG 1 cut(s) 1160
BtsIMutI CAGTG 1 cut(s) 1160
Cac8I GCNNGC 3 cut(s) 43, 214, 993
CfoI GCGC 2 cut(s) 72, 188
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 573, 1053, 1481
CviAII CATG 7 cut(s) 75, 145, 492, 919, 1516, 1684, 1760
CviQI GTAC 3 cut(s) 573, 1053, 1481
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
DriI GACNNNNNGTC 1 cut(s) 870
Eam1104I CTCTTC 3 cut(s) 201, 230, 262
Eam1105I GACNNNNNGTC 1 cut(s) 870
EarI CTCTTC 3 cut(s) 201, 230, 262
EciI GGCGGA 1 cut(s) 1755
Ecl136II GAGCTC 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 390, 1515
Eco147I AGGCCT 3 cut(s) 163, 212, 904
Eco24I GRGCYC 2 cut(s) 196, 1702
Eco53kI GAGCTC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 1127
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 131, 1725
EcoT14I CCWWGG 2 cut(s) 390, 1515
EcoT22I ATGCAT 2 cut(s) 685, 1350
EcoT38I GRGCYC 2 cut(s) 196, 1702
ErhI CCWWGG 2 cut(s) 390, 1515
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 7 cut(s) 78, 148, 495, 922, 1519, 1687, 1763
FaqI GGGAC 2 cut(s) 29, 858
FatI CATG 7 cut(s) 74, 144, 491, 918, 1515, 1683, 1759
FauNDI CATATG 1 cut(s) 690
FblI GTMKAC 1 cut(s) 321
FokI GGATG 7 cut(s) 362, 659, 1039, 1335, 1420, 1532, 1539
FriOI GRGCYC 2 cut(s) 196, 1702
FspBI CTAG 4 cut(s) 159, 332, 867, 1023
GlaI GCGC 2 cut(s) 71, 187
GsuI CTGGAG 1 cut(s) 981
HaeIII GGCC 3 cut(s) 163, 212, 904
HapII CCGG 2 cut(s) 311, 746
HgaI GACGC 1 cut(s) 383
HhaI GCGC 2 cut(s) 72, 188
Hin1I GRCGYC 2 cut(s) 318, 1426
Hin1II CATG 7 cut(s) 78, 148, 495, 922, 1519, 1687, 1763
Hin6I GCGC 2 cut(s) 70, 186
HinP1I GCGC 2 cut(s) 70, 186
HincII GTYRAC 1 cut(s) 1430
HindII GTYRAC 1 cut(s) 1430
HindIII AAGCTT 2 cut(s) 138, 602
HpaII CCGG 2 cut(s) 311, 746
HphI GGTGA 2 cut(s) 158, 821
Hpy166II GTNNAC 5 cut(s) 322, 759, 785, 1430, 1618
Hpy188I TCNGA 6 cut(s) 442, 565, 858, 1507, 1695, 1768
Hpy8I GTNNAC 5 cut(s) 322, 759, 785, 1430, 1618
Hpy99I CGWCG 2 cut(s) 23, 320
HpyAV CCTTC 8 cut(s) 121, 135, 1043, 1196, 1459, 1540, 1705, 1712
HpyCH4III ACNGT 5 cut(s) 23, 770, 1002, 1195, 1538
HpyCH4IV ACGT 5 cut(s) 63, 318, 571, 1383, 1426
HpyCH4V TGCA 8 cut(s) 60, 301, 683, 785, 1297, 1348, 1360, 1564
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 104, 416, 889, 1264, 1303, 1393, 1402, 1570
HpySE526I ACGT 5 cut(s) 63, 318, 571, 1383, 1426
Hsp92I GRCGYC 2 cut(s) 318, 1426
Hsp92II CATG 7 cut(s) 78, 148, 495, 922, 1519, 1687, 1763
HspAI GCGC 2 cut(s) 70, 186
Kzo9I GATC 1 cut(s) 422
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 5 cut(s) 309, 553, 1225, 1247, 1705
LweI GCATC 5 cut(s) 670, 692, 906, 1357, 1551
MaeI CTAG 4 cut(s) 159, 332, 867, 1023
MaeII ACGT 5 cut(s) 63, 318, 571, 1383, 1426
MaeIII GTNAC 6 cut(s) 29, 371, 809, 1086, 1142, 1509
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 8 cut(s) 94, 188, 217, 249, 252, 255, 537, 1434
MfeI CAATTG 1 cut(s) 1068
MhlI GDGCHC 5 cut(s) 196, 787, 1160, 1219, 1702
MlyI GAGTC 4 cut(s) 143, 622, 880, 1757
MmeI TCCRAC 1 cut(s) 202
Mph1103I ATGCAT 2 cut(s) 685, 1350
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 1 cut(s) 1451
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 2 cut(s) 311, 746
MspR9I CCNGG 4 cut(s) 133, 311, 746, 1727
MunI CAATTG 1 cut(s) 1068
Mva1269I GAATGC 1 cut(s) 1422
MvaI CCWGG 2 cut(s) 133, 1727
MvnI CGCG 2 cut(s) 186, 945
MwoI GCNNNNNNNGC 9 cut(s) 76, 104, 416, 889, 1264, 1303, 1393, 1402, 1570
NciI CCSGG 2 cut(s) 311, 746
NcoI CCATGG 1 cut(s) 1515
NdeI CATATG 1 cut(s) 690
NdeII GATC 1 cut(s) 422
NlaIII CATG 7 cut(s) 78, 148, 495, 922, 1519, 1687, 1763
NlaIV GGNNCC 3 cut(s) 384, 1243, 1701
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 371, 809
NsiI ATGCAT 2 cut(s) 685, 1350
PaeR7I CTCGAG 1 cut(s) 189
PceI AGGCCT 3 cut(s) 163, 212, 904
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 1422
PflFI GACNNNGTC 1 cut(s) 317
PfoI TCCNGGA 2 cut(s) 744, 1725
PleI GAGTC 4 cut(s) 143, 621, 879, 1757
PpsI GAGTC 4 cut(s) 143, 621, 879, 1757
PshAI GACNNNNGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 131, 1725
PspGI CCWGG 2 cut(s) 131, 1725
PspN4I GGNNCC 3 cut(s) 384, 1243, 1701
PspXI VCTCGAGB 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 3 cut(s) 574, 1054, 1482
RsaNI GTAC 3 cut(s) 573, 1053, 1481
RseI CAYNNNNRTG 1 cut(s) 1451
SacI GAGCTC 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 600
Sau3AI GATC 1 cut(s) 422
SchI GAGTC 4 cut(s) 143, 622, 880, 1757
ScrFI CCNGG 4 cut(s) 133, 311, 746, 1727
SduI GDGCHC 5 cut(s) 196, 787, 1160, 1219, 1702
SfaNI GCATC 5 cut(s) 670, 692, 906, 1357, 1551
SfcI CTRYAG 2 cut(s) 535, 1056
Sfr274I CTCGAG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 1451
SmlI CTYRAG 6 cut(s) 189, 599, 608, 884, 1665, 1792
SmoI CTYRAG 6 cut(s) 189, 599, 608, 884, 1665, 1792
SseBI AGGCCT 3 cut(s) 163, 212, 904
SsiI CCGC 3 cut(s) 184, 945, 1740
SspI AATATT 1 cut(s) 1039
SspMI CTAG 4 cut(s) 159, 332, 867, 1023
SstI GAGCTC 1 cut(s) 196
StuI AGGCCT 3 cut(s) 163, 212, 904
StyD4I CCNGG 4 cut(s) 131, 309, 744, 1725
StyI CCWWGG 2 cut(s) 390, 1515
TaaI ACNGT 5 cut(s) 23, 770, 1002, 1195, 1538
TaiI ACGT 5 cut(s) 66, 321, 574, 1386, 1429
TaqI TCGA 5 cut(s) 51, 190, 204, 1321, 1595
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 1 cut(s) 1160
TseFI GTSAC 2 cut(s) 371, 809
Tsp45I GTSAC 2 cut(s) 371, 809
TspDTI ATGAA 4 cut(s) 133, 707, 1740, 1785
TspGWI ACGGA 1 cut(s) 1293
TspRI CASTG 1 cut(s) 1160
Tth111I GACNNNGTC 1 cut(s) 317
Vha464I CTTAAG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 783
XapI RAATTY 4 cut(s) 1249, 1272, 1581, 1659
XbaI TCTAGA 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 4 cut(s) 159, 332, 867, 1023
ZraI GACGTC 2 cut(s) 319, 1427
Zsp2I ATGCAT 2 cut(s) 685, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.