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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65540 |
| fragaria_vesca | FvH4_1g19490 FvH4_1g19490 |
| malus_domestica | MD01G1040900.v1.1 MD15G1310400.v1.1 |
| prunus_persica | Prupe.6G203300_v2.0.a1 |
| pyrus_communis | pycom01g06850 pycom15g27420 |
| rosa_chinensis | RchiOBHm_Chr2g0110871 RchiOBHm_Chr2g0110941 |
| rosa_laevigata | RLG00000017847 RLG00000017849 RLG00000017853 RLG00000017855 |
| rosa_multiflora | Rmu_sc0003994.1_g000015 Rmu_sc0003994.1_g000016 Rmu_sc0032518.1_g000001 Rmu_sc0032519.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00132780 Rroxscaffold_2G00132790 |
| rosa_rugosa | Rorug02G0170300 Rorug02G0170300 |
| rosa_samantha | Rh2AG222300 Rh2BG233100 Rh2BG233800 Rh2CG225100 Rh2CG225400 Rh2DG230300 |
| rosa_wichuraiana | Rw2G017180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 321, 1429 |
| AccB1I | GGYRCC | 1 cut(s) | 382 |
| AccI | GTMKAC | 1 cut(s) | 321 |
| AccII | CGCG | 2 cut(s) | 186, 945 |
| AciI | CCGC | 3 cut(s) | 184, 945, 1740 |
| AclWI | GGATC | 1 cut(s) | 430 |
| AcsI | RAATTY | 4 cut(s) | 1249, 1272, 1581, 1659 |
| AcuI | CTGAAG | 1 cut(s) | 1127 |
| AcyI | GRCGYC | 2 cut(s) | 318, 1426 |
| AfaI | GTAC | 3 cut(s) | 574, 1054, 1482 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 159, 656, 919, 1111, 1448, 1520 |
| AflII | CTTAAG | 1 cut(s) | 599 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 870 |
| AjnI | CCWGG | 2 cut(s) | 131, 1725 |
| Alw21I | GWGCWC | 4 cut(s) | 196, 787, 1160, 1219 |
| Alw26I | GTCTC | 2 cut(s) | 348, 1293 |
| Alw44I | GTGCAC | 1 cut(s) | 783 |
| AlwI | GGATC | 1 cut(s) | 430 |
| Ama87I | CYCGRG | 1 cut(s) | 189 |
| AoxI | GGCC | 3 cut(s) | 161, 210, 902 |
| ApaLI | GTGCAC | 1 cut(s) | 783 |
| ApoI | RAATTY | 4 cut(s) | 1249, 1272, 1581, 1659 |
| AspLEI | GCGC | 2 cut(s) | 72, 188 |
| AsuC2I | CCSGG | 2 cut(s) | 311, 746 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 821 |
| AvaI | CYCGRG | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 787 |
| BanI | GGYRCC | 1 cut(s) | 382 |
| BanII | GRGCYC | 2 cut(s) | 196, 1702 |
| BbsI | GAAGAC | 2 cut(s) | 537, 1429 |
| Bbv12I | GWGCWC | 4 cut(s) | 196, 787, 1160, 1219 |
| BbvCI | CCTCAGC | 1 cut(s) | 914 |
| BceAI | ACGGC | 2 cut(s) | 257, 370 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 61, 95 |
| BciT130I | CCWGG | 2 cut(s) | 133, 1727 |
| BcnI | CCSGG | 2 cut(s) | 311, 746 |
| BcoDI | GTCTC | 2 cut(s) | 348, 1293 |
| BfaI | CTAG | 4 cut(s) | 159, 332, 867, 1023 |
| BfmI | CTRYAG | 2 cut(s) | 535, 1056 |
| BfrI | CTTAAG | 1 cut(s) | 599 |
| BlpI | GCTNAGC | 1 cut(s) | 1159 |
| Bme1390I | CCNGG | 4 cut(s) | 133, 311, 746, 1727 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 870 |
| BmeT110I | CYCGRG | 1 cut(s) | 189 |
| BmiI | GGNNCC | 3 cut(s) | 384, 1243, 1701 |
| BmrFI | CCNGG | 4 cut(s) | 133, 311, 746, 1727 |
| BmsI | GCATC | 5 cut(s) | 670, 692, 906, 1357, 1551 |
| BoxI | GACNNNNGTC | 1 cut(s) | 21 |
| BpiI | GAAGAC | 2 cut(s) | 537, 1429 |
| BpmI | CTGGAG | 1 cut(s) | 981 |
| Bpu10I | CCTNAGC | 1 cut(s) | 914 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1159 |
| BpuEI | CTTGAG | 4 cut(s) | 629, 905, 1650, 1777 |
| BpuMI | CCSGG | 2 cut(s) | 311, 746 |
| BsaHI | GRCGYC | 2 cut(s) | 318, 1426 |
| BsaJI | CCNNGG | 3 cut(s) | 132, 390, 1515 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 159, 656, 919, 1111, 1448, 1520 |
| Bse1I | ACTGG | 1 cut(s) | 1285 |
| Bse3DI | GCAATG | 1 cut(s) | 848 |
| BseBI | CCWGG | 2 cut(s) | 133, 1727 |
| BseDI | CCNNGG | 3 cut(s) | 132, 390, 1515 |
| BseGI | GGATG | 7 cut(s) | 355, 672, 1032, 1348, 1433, 1525, 1552 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 159, 656, 919, 1111, 1448, 1520 |
| BseMI | GCAATG | 1 cut(s) | 848 |
| BseMII | CTCAG | 9 cut(s) | 359, 869, 928, 1097, 1173, 1277, 1304, 1637, 1685 |
| BseNI | ACTGG | 1 cut(s) | 1285 |
| BseRI | GAGGAG | 4 cut(s) | 241, 244, 596, 1431 |
| BseSI | GKGCMC | 1 cut(s) | 787 |
| Bsh1236I | CGCG | 2 cut(s) | 186, 945 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 3 cut(s) | 163, 212, 904 |
| BshNI | GGYRCC | 1 cut(s) | 382 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiHKAI | GWGCWC | 4 cut(s) | 196, 787, 1160, 1219 |
| BsiHKCI | CYCGRG | 1 cut(s) | 189 |
| BsiSI | CCGG | 2 cut(s) | 311, 746 |
| BslFI | GGGAC | 2 cut(s) | 29, 858 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 159, 656, 919, 1111, 1448, 1520 |
| BsmAI | GTCTC | 2 cut(s) | 348, 1293 |
| BsmBI | CGTCTC | 1 cut(s) | 348 |
| BsmFI | GGGAC | 2 cut(s) | 29, 858 |
| BsmI | GAATGC | 1 cut(s) | 1422 |
| BsnI | GGCC | 3 cut(s) | 163, 212, 904 |
| BsoBI | CYCGRG | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 5 cut(s) | 196, 787, 1160, 1219, 1702 |
| Bsp143I | GATC | 1 cut(s) | 422 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1159 |
| Bsp19I | CCATGG | 1 cut(s) | 1515 |
| BspACI | CCGC | 3 cut(s) | 184, 945, 1740 |
| BspANI | GGCC | 3 cut(s) | 163, 212, 904 |
| BspCNI | CTCAG | 9 cut(s) | 358, 868, 927, 1096, 1172, 1276, 1303, 1636, 1686 |
| BspFNI | CGCG | 2 cut(s) | 186, 945 |
| BspLI | GGNNCC | 3 cut(s) | 384, 1243, 1701 |
| BspPI | GGATC | 1 cut(s) | 430 |
| BspQI | GCTCTTC | 1 cut(s) | 201 |
| BspT107I | GGYRCC | 1 cut(s) | 382 |
| BspTI | CTTAAG | 1 cut(s) | 599 |
| BsrDI | GCAATG | 1 cut(s) | 848 |
| BsrI | ACTGG | 1 cut(s) | 1285 |
| BssECI | CCNNGG | 3 cut(s) | 132, 390, 1515 |
| BssMI | GATC | 1 cut(s) | 422 |
| BssNI | GRCGYC | 2 cut(s) | 318, 1426 |
| BssT1I | CCWWGG | 2 cut(s) | 390, 1515 |
| Bst2UI | CCWGG | 2 cut(s) | 133, 1727 |
| Bst4CI | ACNGT | 5 cut(s) | 23, 770, 1002, 1195, 1538 |
| Bst6I | CTCTTC | 3 cut(s) | 201, 230, 262 |
| BstACI | GRCGYC | 2 cut(s) | 318, 1426 |
| BstAFI | CTTAAG | 1 cut(s) | 599 |
| BstC8I | GCNNGC | 3 cut(s) | 43, 214, 993 |
| BstDSI | CCRYGG | 1 cut(s) | 1515 |
| BstF5I | GGATG | 7 cut(s) | 355, 672, 1032, 1348, 1433, 1525, 1552 |
| BstFNI | CGCG | 2 cut(s) | 186, 945 |
| BstHHI | GCGC | 2 cut(s) | 72, 188 |
| BstKTI | GATC | 1 cut(s) | 425 |
| BstMAI | GTCTC | 2 cut(s) | 348, 1293 |
| BstMBI | GATC | 1 cut(s) | 422 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 76, 104, 416, 889, 1264, 1303, 1393, 1402, 1570 |
| BstNI | CCWGG | 2 cut(s) | 133, 1727 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 21 |
| BstSCI | CCNGG | 4 cut(s) | 131, 309, 744, 1725 |
| BstSFI | CTRYAG | 2 cut(s) | 535, 1056 |
| BstSLI | GKGCMC | 1 cut(s) | 787 |
| BstUI | CGCG | 2 cut(s) | 186, 945 |
| BstV2I | GAAGAC | 2 cut(s) | 537, 1429 |
| BsuRI | GGCC | 3 cut(s) | 163, 212, 904 |
| BtgI | CCRYGG | 1 cut(s) | 1515 |
| BtgZI | GCGATG | 1 cut(s) | 926 |
| BtsCI | GGATG | 7 cut(s) | 355, 672, 1032, 1348, 1433, 1525, 1552 |
| BtsI | GCAGTG | 1 cut(s) | 1160 |
| BtsIMutI | CAGTG | 1 cut(s) | 1160 |
| Cac8I | GCNNGC | 3 cut(s) | 43, 214, 993 |
| CfoI | GCGC | 2 cut(s) | 72, 188 |
| CseI | GACGC | 1 cut(s) | 383 |
| Csp6I | GTAC | 3 cut(s) | 573, 1053, 1481 |
| CviAII | CATG | 7 cut(s) | 75, 145, 492, 919, 1516, 1684, 1760 |
| CviQI | GTAC | 3 cut(s) | 573, 1053, 1481 |
| DpnI | GATC | 1 cut(s) | 424 |
| DpnII | GATC | 1 cut(s) | 422 |
| DriI | GACNNNNNGTC | 1 cut(s) | 870 |
| Eam1104I | CTCTTC | 3 cut(s) | 201, 230, 262 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 870 |
| EarI | CTCTTC | 3 cut(s) | 201, 230, 262 |
| EciI | GGCGGA | 1 cut(s) | 1755 |
| Ecl136II | GAGCTC | 1 cut(s) | 194 |
| Eco130I | CCWWGG | 2 cut(s) | 390, 1515 |
| Eco147I | AGGCCT | 3 cut(s) | 163, 212, 904 |
| Eco24I | GRGCYC | 2 cut(s) | 196, 1702 |
| Eco53kI | GAGCTC | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 1 cut(s) | 1127 |
| Eco88I | CYCGRG | 1 cut(s) | 189 |
| EcoICRI | GAGCTC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 2 cut(s) | 131, 1725 |
| EcoT14I | CCWWGG | 2 cut(s) | 390, 1515 |
| EcoT22I | ATGCAT | 2 cut(s) | 685, 1350 |
| EcoT38I | GRGCYC | 2 cut(s) | 196, 1702 |
| ErhI | CCWWGG | 2 cut(s) | 390, 1515 |
| Esp3I | CGTCTC | 1 cut(s) | 348 |
| FaeI | CATG | 7 cut(s) | 78, 148, 495, 922, 1519, 1687, 1763 |
| FaqI | GGGAC | 2 cut(s) | 29, 858 |
| FatI | CATG | 7 cut(s) | 74, 144, 491, 918, 1515, 1683, 1759 |
| FauNDI | CATATG | 1 cut(s) | 690 |
| FblI | GTMKAC | 1 cut(s) | 321 |
| FokI | GGATG | 7 cut(s) | 362, 659, 1039, 1335, 1420, 1532, 1539 |
| FriOI | GRGCYC | 2 cut(s) | 196, 1702 |
| FspBI | CTAG | 4 cut(s) | 159, 332, 867, 1023 |
| GlaI | GCGC | 2 cut(s) | 71, 187 |
| GsuI | CTGGAG | 1 cut(s) | 981 |
| HaeIII | GGCC | 3 cut(s) | 163, 212, 904 |
| HapII | CCGG | 2 cut(s) | 311, 746 |
| HgaI | GACGC | 1 cut(s) | 383 |
| HhaI | GCGC | 2 cut(s) | 72, 188 |
| Hin1I | GRCGYC | 2 cut(s) | 318, 1426 |
| Hin1II | CATG | 7 cut(s) | 78, 148, 495, 922, 1519, 1687, 1763 |
| Hin6I | GCGC | 2 cut(s) | 70, 186 |
| HinP1I | GCGC | 2 cut(s) | 70, 186 |
| HincII | GTYRAC | 1 cut(s) | 1430 |
| HindII | GTYRAC | 1 cut(s) | 1430 |
| HindIII | AAGCTT | 2 cut(s) | 138, 602 |
| HpaII | CCGG | 2 cut(s) | 311, 746 |
| HphI | GGTGA | 2 cut(s) | 158, 821 |
| Hpy166II | GTNNAC | 5 cut(s) | 322, 759, 785, 1430, 1618 |
| Hpy188I | TCNGA | 6 cut(s) | 442, 565, 858, 1507, 1695, 1768 |
| Hpy8I | GTNNAC | 5 cut(s) | 322, 759, 785, 1430, 1618 |
| Hpy99I | CGWCG | 2 cut(s) | 23, 320 |
| HpyAV | CCTTC | 8 cut(s) | 121, 135, 1043, 1196, 1459, 1540, 1705, 1712 |
| HpyCH4III | ACNGT | 5 cut(s) | 23, 770, 1002, 1195, 1538 |
| HpyCH4IV | ACGT | 5 cut(s) | 63, 318, 571, 1383, 1426 |
| HpyCH4V | TGCA | 8 cut(s) | 60, 301, 683, 785, 1297, 1348, 1360, 1564 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 76, 104, 416, 889, 1264, 1303, 1393, 1402, 1570 |
| HpySE526I | ACGT | 5 cut(s) | 63, 318, 571, 1383, 1426 |
| Hsp92I | GRCGYC | 2 cut(s) | 318, 1426 |
| Hsp92II | CATG | 7 cut(s) | 78, 148, 495, 922, 1519, 1687, 1763 |
| HspAI | GCGC | 2 cut(s) | 70, 186 |
| Kzo9I | GATC | 1 cut(s) | 422 |
| LguI | GCTCTTC | 1 cut(s) | 201 |
| LmnI | GCTCC | 5 cut(s) | 309, 553, 1225, 1247, 1705 |
| LweI | GCATC | 5 cut(s) | 670, 692, 906, 1357, 1551 |
| MaeI | CTAG | 4 cut(s) | 159, 332, 867, 1023 |
| MaeII | ACGT | 5 cut(s) | 63, 318, 571, 1383, 1426 |
| MaeIII | GTNAC | 6 cut(s) | 29, 371, 809, 1086, 1142, 1509 |
| MalI | GATC | 1 cut(s) | 424 |
| MboI | GATC | 1 cut(s) | 422 |
| MboII | GAAGA | 8 cut(s) | 94, 188, 217, 249, 252, 255, 537, 1434 |
| MfeI | CAATTG | 1 cut(s) | 1068 |
| MhlI | GDGCHC | 5 cut(s) | 196, 787, 1160, 1219, 1702 |
| MlyI | GAGTC | 4 cut(s) | 143, 622, 880, 1757 |
| MmeI | TCCRAC | 1 cut(s) | 202 |
| Mph1103I | ATGCAT | 2 cut(s) | 685, 1350 |
| MseI | TTAA | 1 cut(s) | 600 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1451 |
| MspCI | CTTAAG | 1 cut(s) | 599 |
| MspI | CCGG | 2 cut(s) | 311, 746 |
| MspR9I | CCNGG | 4 cut(s) | 133, 311, 746, 1727 |
| MunI | CAATTG | 1 cut(s) | 1068 |
| Mva1269I | GAATGC | 1 cut(s) | 1422 |
| MvaI | CCWGG | 2 cut(s) | 133, 1727 |
| MvnI | CGCG | 2 cut(s) | 186, 945 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 76, 104, 416, 889, 1264, 1303, 1393, 1402, 1570 |
| NciI | CCSGG | 2 cut(s) | 311, 746 |
| NcoI | CCATGG | 1 cut(s) | 1515 |
| NdeI | CATATG | 1 cut(s) | 690 |
| NdeII | GATC | 1 cut(s) | 422 |
| NlaIII | CATG | 7 cut(s) | 78, 148, 495, 922, 1519, 1687, 1763 |
| NlaIV | GGNNCC | 3 cut(s) | 384, 1243, 1701 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 2 cut(s) | 371, 809 |
| NsiI | ATGCAT | 2 cut(s) | 685, 1350 |
| PaeR7I | CTCGAG | 1 cut(s) | 189 |
| PceI | AGGCCT | 3 cut(s) | 163, 212, 904 |
| PciSI | GCTCTTC | 1 cut(s) | 201 |
| PctI | GAATGC | 1 cut(s) | 1422 |
| PflFI | GACNNNGTC | 1 cut(s) | 317 |
| PfoI | TCCNGGA | 2 cut(s) | 744, 1725 |
| PleI | GAGTC | 4 cut(s) | 143, 621, 879, 1757 |
| PpsI | GAGTC | 4 cut(s) | 143, 621, 879, 1757 |
| PshAI | GACNNNNGTC | 1 cut(s) | 21 |
| Psp124BI | GAGCTC | 1 cut(s) | 196 |
| Psp6I | CCWGG | 2 cut(s) | 131, 1725 |
| PspGI | CCWGG | 2 cut(s) | 131, 1725 |
| PspN4I | GGNNCC | 3 cut(s) | 384, 1243, 1701 |
| PspXI | VCTCGAGB | 1 cut(s) | 189 |
| PsyI | GACNNNGTC | 1 cut(s) | 317 |
| RsaI | GTAC | 3 cut(s) | 574, 1054, 1482 |
| RsaNI | GTAC | 3 cut(s) | 573, 1053, 1481 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1451 |
| SacI | GAGCTC | 1 cut(s) | 196 |
| SapI | GCTCTTC | 1 cut(s) | 201 |
| SaqAI | TTAA | 1 cut(s) | 600 |
| Sau3AI | GATC | 1 cut(s) | 422 |
| SchI | GAGTC | 4 cut(s) | 143, 622, 880, 1757 |
| ScrFI | CCNGG | 4 cut(s) | 133, 311, 746, 1727 |
| SduI | GDGCHC | 5 cut(s) | 196, 787, 1160, 1219, 1702 |
| SfaNI | GCATC | 5 cut(s) | 670, 692, 906, 1357, 1551 |
| SfcI | CTRYAG | 2 cut(s) | 535, 1056 |
| Sfr274I | CTCGAG | 1 cut(s) | 189 |
| SlaI | CTCGAG | 1 cut(s) | 189 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1451 |
| SmlI | CTYRAG | 6 cut(s) | 189, 599, 608, 884, 1665, 1792 |
| SmoI | CTYRAG | 6 cut(s) | 189, 599, 608, 884, 1665, 1792 |
| SseBI | AGGCCT | 3 cut(s) | 163, 212, 904 |
| SsiI | CCGC | 3 cut(s) | 184, 945, 1740 |
| SspI | AATATT | 1 cut(s) | 1039 |
| SspMI | CTAG | 4 cut(s) | 159, 332, 867, 1023 |
| SstI | GAGCTC | 1 cut(s) | 196 |
| StuI | AGGCCT | 3 cut(s) | 163, 212, 904 |
| StyD4I | CCNGG | 4 cut(s) | 131, 309, 744, 1725 |
| StyI | CCWWGG | 2 cut(s) | 390, 1515 |
| TaaI | ACNGT | 5 cut(s) | 23, 770, 1002, 1195, 1538 |
| TaiI | ACGT | 5 cut(s) | 66, 321, 574, 1386, 1429 |
| TaqI | TCGA | 5 cut(s) | 51, 190, 204, 1321, 1595 |
| Tru1I | TTAA | 1 cut(s) | 600 |
| Tru9I | TTAA | 1 cut(s) | 600 |
| TscAI | CASTG | 1 cut(s) | 1160 |
| TseFI | GTSAC | 2 cut(s) | 371, 809 |
| Tsp45I | GTSAC | 2 cut(s) | 371, 809 |
| TspDTI | ATGAA | 4 cut(s) | 133, 707, 1740, 1785 |
| TspGWI | ACGGA | 1 cut(s) | 1293 |
| TspRI | CASTG | 1 cut(s) | 1160 |
| Tth111I | GACNNNGTC | 1 cut(s) | 317 |
| Vha464I | CTTAAG | 1 cut(s) | 599 |
| VneI | GTGCAC | 1 cut(s) | 783 |
| XapI | RAATTY | 4 cut(s) | 1249, 1272, 1581, 1659 |
| XbaI | TCTAGA | 1 cut(s) | 331 |
| XhoI | CTCGAG | 1 cut(s) | 189 |
| XmiI | GTMKAC | 1 cut(s) | 321 |
| XspI | CTAG | 4 cut(s) | 159, 332, 867, 1023 |
| ZraI | GACGTC | 2 cut(s) | 319, 1427 |
| Zsp2I | ATGCAT | 2 cut(s) | 685, 1350 |