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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65540 |
| fragaria_vesca | FvH4_1g19490 FvH4_1g19490 |
| malus_domestica | MD01G1040900.v1.1 MD15G1310400.v1.1 |
| prunus_persica | Prupe.6G203300_v2.0.a1 |
| pyrus_communis | pycom01g06850 pycom15g27420 |
| rosa_chinensis | RchiOBHm_Chr2g0110871 RchiOBHm_Chr2g0110941 |
| rosa_laevigata | RLG00000017847 RLG00000017849 RLG00000017853 RLG00000017855 |
| rosa_multiflora | Rmu_sc0003994.1_g000015 Rmu_sc0003994.1_g000016 Rmu_sc0032518.1_g000001 Rmu_sc0032519.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00132780 Rroxscaffold_2G00132790 |
| rosa_rugosa | Rorug02G0170300 Rorug02G0170300 |
| rosa_samantha | Rh2AG222300 Rh2BG233100 Rh2BG233800 Rh2CG225100 Rh2CG225400 Rh2DG230300 |
| rosa_wichuraiana | Rw2G017180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 333, 1447 |
| AccB1I | GGYRCC | 1 cut(s) | 394 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1129 |
| AccI | GTMKAC | 1 cut(s) | 333 |
| AccII | CGCG | 1 cut(s) | 963 |
| AciI | CCGC | 4 cut(s) | 232, 963, 1418, 1758 |
| AclWI | GGATC | 2 cut(s) | 442, 653 |
| AcsI | RAATTY | 4 cut(s) | 1267, 1290, 1599, 1677 |
| AcuI | CTGAAG | 1 cut(s) | 602 |
| AcyI | GRCGYC | 2 cut(s) | 330, 1444 |
| AfaI | GTAC | 3 cut(s) | 586, 1072, 1500 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 159, 668, 937, 1129, 1466, 1538 |
| AflII | CTTAAG | 1 cut(s) | 611 |
| AflIII | ACRYGT | 1 cut(s) | 640 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 888 |
| AjiI | CACGTC | 1 cut(s) | 641 |
| AjnI | CCWGG | 3 cut(s) | 131, 321, 1743 |
| Alw21I | GWGCWC | 5 cut(s) | 190, 196, 805, 1178, 1237 |
| Alw26I | GTCTC | 1 cut(s) | 1311 |
| Alw44I | GTGCAC | 1 cut(s) | 801 |
| AlwI | GGATC | 2 cut(s) | 442, 653 |
| Ama87I | CYCGRG | 2 cut(s) | 11, 189 |
| AoxI | GGCC | 3 cut(s) | 161, 210, 920 |
| ApaLI | GTGCAC | 1 cut(s) | 801 |
| ApoI | RAATTY | 4 cut(s) | 1267, 1290, 1599, 1677 |
| AspLEI | GCGC | 1 cut(s) | 72 |
| AsuC2I | CCSGG | 1 cut(s) | 764 |
| AsuHPI | GGTGA | 1 cut(s) | 158 |
| AvaI | CYCGRG | 2 cut(s) | 11, 189 |
| BaeGI | GKGCMC | 1 cut(s) | 805 |
| BanI | GGYRCC | 1 cut(s) | 394 |
| BanII | GRGCYC | 2 cut(s) | 196, 1720 |
| BbsI | GAAGAC | 2 cut(s) | 549, 1447 |
| Bbv12I | GWGCWC | 5 cut(s) | 190, 196, 805, 1178, 1237 |
| BbvCI | CCTCAGC | 1 cut(s) | 932 |
| BceAI | ACGGC | 2 cut(s) | 269, 382 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 61, 95 |
| BciT130I | CCWGG | 3 cut(s) | 133, 323, 1745 |
| BcnI | CCSGG | 1 cut(s) | 764 |
| BcoDI | GTCTC | 1 cut(s) | 1311 |
| BfaI | CTAG | 5 cut(s) | 159, 344, 885, 1041, 1238 |
| BfmI | CTRYAG | 1 cut(s) | 1074 |
| BfrI | CTTAAG | 1 cut(s) | 611 |
| BlpI | GCTNAGC | 1 cut(s) | 1177 |
| Bme1390I | CCNGG | 4 cut(s) | 133, 323, 764, 1745 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 888 |
| BmeT110I | CYCGRG | 2 cut(s) | 11, 189 |
| BmgBI | CACGTC | 1 cut(s) | 641 |
| BmiI | GGNNCC | 3 cut(s) | 396, 1261, 1719 |
| BmrFI | CCNGG | 4 cut(s) | 133, 323, 764, 1745 |
| BmsI | GCATC | 6 cut(s) | 682, 704, 924, 1375, 1569, 1753 |
| BoxI | GACNNNNGTC | 1 cut(s) | 21 |
| BpiI | GAAGAC | 2 cut(s) | 549, 1447 |
| BpmI | CTGGAG | 1 cut(s) | 999 |
| Bpu10I | CCTNAGC | 1 cut(s) | 932 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1177 |
| BpuEI | CTTGAG | 3 cut(s) | 923, 1668, 1795 |
| BpuMI | CCSGG | 1 cut(s) | 764 |
| BsaHI | GRCGYC | 2 cut(s) | 330, 1444 |
| BsaJI | CCNNGG | 3 cut(s) | 132, 402, 1533 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 159, 668, 937, 1129, 1466, 1538 |
| Bse1I | ACTGG | 1 cut(s) | 1303 |
| Bse3DI | GCAATG | 1 cut(s) | 866 |
| BseBI | CCWGG | 3 cut(s) | 133, 323, 1745 |
| BseDI | CCNNGG | 3 cut(s) | 132, 402, 1533 |
| BseGI | GGATG | 7 cut(s) | 367, 684, 832, 1050, 1451, 1543, 1570 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 159, 668, 937, 1129, 1466, 1538 |
| BseMI | GCAATG | 1 cut(s) | 866 |
| BseNI | ACTGG | 1 cut(s) | 1303 |
| BseSI | GKGCMC | 1 cut(s) | 805 |
| Bsh1236I | CGCG | 1 cut(s) | 963 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 3 cut(s) | 163, 212, 922 |
| BshNI | GGYRCC | 1 cut(s) | 394 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiHKAI | GWGCWC | 5 cut(s) | 190, 196, 805, 1178, 1237 |
| BsiHKCI | CYCGRG | 2 cut(s) | 11, 189 |
| BsiSI | CCGG | 1 cut(s) | 764 |
| BslFI | GGGAC | 2 cut(s) | 29, 876 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 159, 668, 937, 1129, 1466, 1538 |
| BsmAI | GTCTC | 1 cut(s) | 1311 |
| BsmFI | GGGAC | 2 cut(s) | 29, 876 |
| BsmI | GAATGC | 1 cut(s) | 1440 |
| BsnI | GGCC | 3 cut(s) | 163, 212, 922 |
| BsoBI | CYCGRG | 2 cut(s) | 11, 189 |
| Bsp1286I | GDGCHC | 6 cut(s) | 190, 196, 805, 1178, 1237, 1720 |
| Bsp143I | GATC | 2 cut(s) | 434, 658 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1177 |
| Bsp19I | CCATGG | 1 cut(s) | 1533 |
| BspACI | CCGC | 4 cut(s) | 232, 963, 1418, 1758 |
| BspANI | GGCC | 3 cut(s) | 163, 212, 922 |
| BspFNI | CGCG | 1 cut(s) | 963 |
| BspLI | GGNNCC | 3 cut(s) | 396, 1261, 1719 |
| BspPI | GGATC | 2 cut(s) | 442, 653 |
| BspQI | GCTCTTC | 1 cut(s) | 201 |
| BspT107I | GGYRCC | 1 cut(s) | 394 |
| BspTI | CTTAAG | 1 cut(s) | 611 |
| BsrDI | GCAATG | 1 cut(s) | 866 |
| BsrI | ACTGG | 1 cut(s) | 1303 |
| BssECI | CCNNGG | 3 cut(s) | 132, 402, 1533 |
| BssMI | GATC | 2 cut(s) | 434, 658 |
| BssNI | GRCGYC | 2 cut(s) | 330, 1444 |
| BssT1I | CCWWGG | 2 cut(s) | 402, 1533 |
| Bst2UI | CCWGG | 3 cut(s) | 133, 323, 1745 |
| Bst4CI | ACNGT | 6 cut(s) | 23, 546, 788, 1020, 1213, 1556 |
| Bst6I | CTCTTC | 3 cut(s) | 201, 230, 274 |
| BstACI | GRCGYC | 2 cut(s) | 330, 1444 |
| BstAFI | CTTAAG | 1 cut(s) | 611 |
| BstC8I | GCNNGC | 3 cut(s) | 43, 214, 1011 |
| BstDSI | CCRYGG | 1 cut(s) | 1533 |
| BstF5I | GGATG | 7 cut(s) | 367, 684, 832, 1050, 1451, 1543, 1570 |
| BstFNI | CGCG | 1 cut(s) | 963 |
| BstHHI | GCGC | 1 cut(s) | 72 |
| BstKTI | GATC | 2 cut(s) | 437, 661 |
| BstMAI | GTCTC | 1 cut(s) | 1311 |
| BstMBI | GATC | 2 cut(s) | 434, 658 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 76, 104, 428, 907, 1282, 1321, 1411, 1420, 1588 |
| BstNI | CCWGG | 3 cut(s) | 133, 323, 1745 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 21 |
| BstSCI | CCNGG | 4 cut(s) | 131, 321, 762, 1743 |
| BstSFI | CTRYAG | 1 cut(s) | 1074 |
| BstSLI | GKGCMC | 1 cut(s) | 805 |
| BstUI | CGCG | 1 cut(s) | 963 |
| BstV2I | GAAGAC | 2 cut(s) | 549, 1447 |
| BstX2I | RGATCY | 1 cut(s) | 658 |
| BstYI | RGATCY | 1 cut(s) | 658 |
| BsuRI | GGCC | 3 cut(s) | 163, 212, 922 |
| BtgI | CCRYGG | 1 cut(s) | 1533 |
| BtgZI | GCGATG | 1 cut(s) | 944 |
| BtrI | CACGTC | 1 cut(s) | 641 |
| BtsCI | GGATG | 7 cut(s) | 367, 684, 832, 1050, 1451, 1543, 1570 |
| BtsI | GCAGTG | 1 cut(s) | 1178 |
| BtsIMutI | CAGTG | 1 cut(s) | 1178 |
| Cac8I | GCNNGC | 3 cut(s) | 43, 214, 1011 |
| CfoI | GCGC | 1 cut(s) | 72 |
| CseI | GACGC | 1 cut(s) | 395 |
| Csp6I | GTAC | 3 cut(s) | 585, 1071, 1499 |
| CviQI | GTAC | 3 cut(s) | 585, 1071, 1499 |
| DpnI | GATC | 2 cut(s) | 436, 660 |
| DpnII | GATC | 2 cut(s) | 434, 658 |
| DriI | GACNNNNNGTC | 1 cut(s) | 888 |
| Eam1104I | CTCTTC | 3 cut(s) | 201, 230, 274 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 888 |
| EarI | CTCTTC | 3 cut(s) | 201, 230, 274 |
| EciI | GGCGGA | 2 cut(s) | 221, 1773 |
| Ecl136II | GAGCTC | 1 cut(s) | 194 |
| Eco130I | CCWWGG | 2 cut(s) | 402, 1533 |
| Eco147I | AGGCCT | 3 cut(s) | 163, 212, 922 |
| Eco24I | GRGCYC | 2 cut(s) | 196, 1720 |
| Eco53kI | GAGCTC | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 1 cut(s) | 602 |
| Eco88I | CYCGRG | 2 cut(s) | 11, 189 |
| EcoICRI | GAGCTC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 3 cut(s) | 131, 321, 1743 |
| EcoT14I | CCWWGG | 2 cut(s) | 402, 1533 |
| EcoT22I | ATGCAT | 2 cut(s) | 697, 1368 |
| EcoT38I | GRGCYC | 2 cut(s) | 196, 1720 |
| ErhI | CCWWGG | 2 cut(s) | 402, 1533 |
| FaqI | GGGAC | 2 cut(s) | 29, 876 |
| FblI | GTMKAC | 1 cut(s) | 333 |
| FokI | GGATG | 7 cut(s) | 374, 671, 839, 1057, 1438, 1550, 1557 |
| FriOI | GRGCYC | 2 cut(s) | 196, 1720 |
| FspBI | CTAG | 5 cut(s) | 159, 344, 885, 1041, 1238 |
| GlaI | GCGC | 1 cut(s) | 71 |
| GsuI | CTGGAG | 1 cut(s) | 999 |
| HaeIII | GGCC | 3 cut(s) | 163, 212, 922 |
| HapII | CCGG | 1 cut(s) | 764 |
| HgaI | GACGC | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 72 |
| Hin1I | GRCGYC | 2 cut(s) | 330, 1444 |
| Hin6I | GCGC | 1 cut(s) | 70 |
| HinP1I | GCGC | 1 cut(s) | 70 |
| HincII | GTYRAC | 1 cut(s) | 1448 |
| HindII | GTYRAC | 1 cut(s) | 1448 |
| HindIII | AAGCTT | 2 cut(s) | 138, 614 |
| HpaII | CCGG | 1 cut(s) | 764 |
| HphI | GGTGA | 1 cut(s) | 158 |
| Hpy166II | GTNNAC | 4 cut(s) | 334, 777, 803, 1448 |
| Hpy188I | TCNGA | 7 cut(s) | 454, 577, 876, 1358, 1525, 1713, 1786 |
| Hpy188III | TCNNGA | 9 cut(s) | 344, 438, 620, 794, 860, 978, 1004, 1123, 1507 |
| Hpy8I | GTNNAC | 4 cut(s) | 334, 777, 803, 1448 |
| Hpy99I | CGWCG | 4 cut(s) | 23, 332, 358, 1790 |
| HpyAV | CCTTC | 7 cut(s) | 121, 1061, 1214, 1477, 1558, 1723, 1730 |
| HpyCH4III | ACNGT | 6 cut(s) | 23, 546, 788, 1020, 1213, 1556 |
| HpyCH4IV | ACGT | 5 cut(s) | 63, 330, 583, 640, 1444 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 76, 104, 428, 907, 1282, 1321, 1411, 1420, 1588 |
| HpySE526I | ACGT | 5 cut(s) | 63, 330, 583, 640, 1444 |
| Hsp92I | GRCGYC | 2 cut(s) | 330, 1444 |
| HspAI | GCGC | 1 cut(s) | 70 |
| Kzo9I | GATC | 2 cut(s) | 434, 658 |
| LguI | GCTCTTC | 1 cut(s) | 201 |
| LmnI | GCTCC | 5 cut(s) | 321, 565, 1243, 1265, 1723 |
| LweI | GCATC | 6 cut(s) | 682, 704, 924, 1375, 1569, 1753 |
| MaeI | CTAG | 5 cut(s) | 159, 344, 885, 1041, 1238 |
| MaeII | ACGT | 5 cut(s) | 63, 330, 583, 640, 1444 |
| MaeIII | GTNAC | 5 cut(s) | 29, 383, 731, 1104, 1160 |
| MalI | GATC | 2 cut(s) | 436, 660 |
| MboI | GATC | 2 cut(s) | 434, 658 |
| MboII | GAAGA | 9 cut(s) | 94, 188, 217, 261, 264, 267, 549, 668, 1452 |
| MfeI | CAATTG | 1 cut(s) | 1086 |
| MflI | RGATCY | 1 cut(s) | 658 |
| MhlI | GDGCHC | 6 cut(s) | 190, 196, 805, 1178, 1237, 1720 |
| MlyI | GAGTC | 4 cut(s) | 143, 634, 898, 1775 |
| MmeI | TCCRAC | 3 cut(s) | 202, 1381, 1809 |
| Mph1103I | ATGCAT | 2 cut(s) | 697, 1368 |
| MseI | TTAA | 1 cut(s) | 612 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1469 |
| MspCI | CTTAAG | 1 cut(s) | 611 |
| MspI | CCGG | 1 cut(s) | 764 |
| MspR9I | CCNGG | 4 cut(s) | 133, 323, 764, 1745 |
| MunI | CAATTG | 1 cut(s) | 1086 |
| Mva1269I | GAATGC | 1 cut(s) | 1440 |
| MvaI | CCWGG | 3 cut(s) | 133, 323, 1745 |
| MvnI | CGCG | 1 cut(s) | 963 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 76, 104, 428, 907, 1282, 1321, 1411, 1420, 1588 |
| NciI | CCSGG | 1 cut(s) | 764 |
| NcoI | CCATGG | 1 cut(s) | 1533 |
| NdeII | GATC | 2 cut(s) | 434, 658 |
| NlaIV | GGNNCC | 3 cut(s) | 396, 1261, 1719 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 1 cut(s) | 383 |
| NsiI | ATGCAT | 2 cut(s) | 697, 1368 |
| PaeR7I | CTCGAG | 1 cut(s) | 189 |
| PceI | AGGCCT | 3 cut(s) | 163, 212, 922 |
| PciSI | GCTCTTC | 1 cut(s) | 201 |
| PctI | GAATGC | 1 cut(s) | 1440 |
| PflFI | GACNNNGTC | 1 cut(s) | 329 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1129 |
| PfoI | TCCNGGA | 2 cut(s) | 762, 1743 |
| PleI | GAGTC | 4 cut(s) | 143, 633, 897, 1775 |
| PpsI | GAGTC | 4 cut(s) | 143, 633, 897, 1775 |
| PshAI | GACNNNNGTC | 1 cut(s) | 21 |
| Psp124BI | GAGCTC | 1 cut(s) | 196 |
| Psp6I | CCWGG | 3 cut(s) | 131, 321, 1743 |
| PspGI | CCWGG | 3 cut(s) | 131, 321, 1743 |
| PspN4I | GGNNCC | 3 cut(s) | 396, 1261, 1719 |
| PspXI | VCTCGAGB | 1 cut(s) | 189 |
| PsuI | RGATCY | 1 cut(s) | 658 |
| PsyI | GACNNNGTC | 1 cut(s) | 329 |
| RsaI | GTAC | 3 cut(s) | 586, 1072, 1500 |
| RsaNI | GTAC | 3 cut(s) | 585, 1071, 1499 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1469 |
| SacI | GAGCTC | 1 cut(s) | 196 |
| SapI | GCTCTTC | 1 cut(s) | 201 |
| SaqAI | TTAA | 1 cut(s) | 612 |
| Sau3AI | GATC | 2 cut(s) | 434, 658 |
| SchI | GAGTC | 4 cut(s) | 143, 634, 898, 1775 |
| ScrFI | CCNGG | 4 cut(s) | 133, 323, 764, 1745 |
| SduI | GDGCHC | 6 cut(s) | 190, 196, 805, 1178, 1237, 1720 |
| SfaNI | GCATC | 6 cut(s) | 682, 704, 924, 1375, 1569, 1753 |
| SfcI | CTRYAG | 1 cut(s) | 1074 |
| Sfr274I | CTCGAG | 1 cut(s) | 189 |
| SlaI | CTCGAG | 1 cut(s) | 189 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1469 |
| SmlI | CTYRAG | 5 cut(s) | 189, 611, 902, 1683, 1810 |
| SmoI | CTYRAG | 5 cut(s) | 189, 611, 902, 1683, 1810 |
| SseBI | AGGCCT | 3 cut(s) | 163, 212, 922 |
| SsiI | CCGC | 4 cut(s) | 232, 963, 1418, 1758 |
| SspI | AATATT | 1 cut(s) | 1057 |
| SspMI | CTAG | 5 cut(s) | 159, 344, 885, 1041, 1238 |
| SstI | GAGCTC | 1 cut(s) | 196 |
| StuI | AGGCCT | 3 cut(s) | 163, 212, 922 |
| StyD4I | CCNGG | 4 cut(s) | 131, 321, 762, 1743 |
| StyI | CCWWGG | 2 cut(s) | 402, 1533 |
| TaaI | ACNGT | 6 cut(s) | 23, 546, 788, 1020, 1213, 1556 |
| TaiI | ACGT | 5 cut(s) | 66, 333, 586, 643, 1447 |
| TaqI | TCGA | 5 cut(s) | 51, 190, 204, 1339, 1613 |
| TauI | GCSGC | 1 cut(s) | 1420 |
| Tru1I | TTAA | 1 cut(s) | 612 |
| Tru9I | TTAA | 1 cut(s) | 612 |
| TscAI | CASTG | 1 cut(s) | 1178 |
| TseFI | GTSAC | 1 cut(s) | 383 |
| Tsp45I | GTSAC | 1 cut(s) | 383 |
| TspDTI | ATGAA | 3 cut(s) | 133, 719, 1758 |
| TspGWI | ACGGA | 2 cut(s) | 173, 1311 |
| TspRI | CASTG | 1 cut(s) | 1178 |
| Tth111I | GACNNNGTC | 1 cut(s) | 329 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1129 |
| Vha464I | CTTAAG | 1 cut(s) | 611 |
| VneI | GTGCAC | 1 cut(s) | 801 |
| XapI | RAATTY | 4 cut(s) | 1267, 1290, 1599, 1677 |
| XbaI | TCTAGA | 1 cut(s) | 343 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1130, 1462 |
| XhoI | CTCGAG | 1 cut(s) | 189 |
| XmiI | GTMKAC | 1 cut(s) | 333 |
| XspI | CTAG | 5 cut(s) | 159, 344, 885, 1041, 1238 |
| ZraI | GACGTC | 2 cut(s) | 331, 1445 |
| Zsp2I | ATGCAT | 2 cut(s) | 697, 1368 |