Rroxscaffold_2G00132790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005483
Physical Location & Seq
Forward (+)
69807918 .. 69810686
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132790.1

Sequence Viewer

Length: 900 bp
ATGTTTACGTTGAACTGTGTTCCTGATAGTGCACTTCCACCTATGAATAGAGCGCAAGAAGACCAAAAAGTTGAATTTTATGGAGTTCTTGATACGTTACCTCAGGCTTTGACTAGGAGTCCCGTTATGCTTGAGAGGCTTGGTATAAGACCTGAATACCTTAGCATGGATCAAGGAGGAAGCTTACATCGTGGAAAGAATGGGTCTGCAGGGAACAAAAGTTGTCTTACTCATGAGCAAGCGGCACAGTTATCTCAAAAGGTAATAGCCCGGATGCTGACAAATGTGGGATTTGAAGGTTCCTCAGAAGTTCCAATTGAAGTTTTCTCTCAGTTGCTAAGCTGTCATATCCGTAAATTGGGTAGCAGCTTGAAAGTTCTTACTGATAGTTACAGAAAGCAGTGTTCAGCAATTGAACTATTGAAGATGTTCCTTCAAACAGTGGGATATAGTAATTTTGGTCCTCTAGCTGATCAAGTCAAGGATGGCTCCAGGAATTTCCATCAACAAAGTCAGCAGCAAATTCATGGAATGCAGTCACAGTTGCAGCCACAGCACCAGAACCCTATTCGACTACCCCAACAAATGCAGCAAATGCAGCAGATTCAGCAACAGCAGCAGATGGAAAGAATGCGAAGACGTCAACCATCTACTCGTGCTGGTATGGACATGGTACAGGACAGACCAATGGTCCAGGTCAGGATTGAAGCTCCATCAGAGTTACCCATGGATAGTAATGCCTTCAACAGTGTCAACAACAGACATCCACAATTGCAGTTCAGGCAGCAGCAAATTCCTGCAATATTGTCGAATCCTACAATGCAAAATGTCCCTGCTCAGTCAGGGAATCAGTTTAGACAGATGTCGTCTTCACAAATTGCACAAATTCAGTCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

299

Amino Acids

33.84

Weight (kDa)

9.47

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 80 - 150 9.9e-06 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 643
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 5 cut(s) 74, 496, 522, 792, 885
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 2 cut(s) 166, 358
AhdI GACNNNNNGTC 2 cut(s) 117, 689
AjnI CCWGG 2 cut(s) 491, 693
AluBI AGCT 5 cut(s) 183, 342, 369, 470, 710
AluI AGCT 5 cut(s) 183, 342, 369, 470, 710
Alw21I GWGCWC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 1 cut(s) 177
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 8 cut(s) 366, 517, 547, 589, 598, 616, 784, 787
ApoI RAATTY 5 cut(s) 74, 496, 522, 792, 885
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 461, 691
AsuC2I CCSGG 1 cut(s) 271
AvaII GGWCC 2 cut(s) 461, 691
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 34
BauI CACGAG 1 cut(s) 654
BbsI GAAGAC 3 cut(s) 66, 643, 861
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 8 cut(s) 378, 529, 559, 601, 610, 628, 796, 799
BccI CCATC 5 cut(s) 479, 510, 616, 655, 721
BcgI CGANNNNNNTGC 2 cut(s) 789, 823
BciT130I CCWGG 2 cut(s) 493, 695
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 271
BfaI CTAG 2 cut(s) 114, 467
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 9 cut(s) 243, 367, 518, 548, 590, 599, 617, 785, 788
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 9 cut(s) 244, 368, 519, 549, 591, 600, 618, 786, 789
Bme1390I CCNGG 3 cut(s) 271, 493, 695
Bme18I GGWCC 2 cut(s) 461, 691
BmeRI GACNNNNNGTC 2 cut(s) 117, 689
BmgT120I GGNCC 2 cut(s) 461, 691
BmiI GGNNCC 2 cut(s) 301, 490
BmrFI CCNGG 3 cut(s) 271, 493, 695
BmsI GCATC 1 cut(s) 264
BoxI GACNNNNGTC 1 cut(s) 862
BpiI GAAGAC 3 cut(s) 66, 643, 861
BpmI CTGGAG 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 161
Bpu1102I GCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 1 cut(s) 726
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 358
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 493, 695
BseDI CCNNGG 1 cut(s) 726
BseGI GGATG 3 cut(s) 279, 490, 763
BseLI CCNNNNNNNGG 2 cut(s) 166, 358
BseMII CTCAG 4 cut(s) 116, 318, 344, 851
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 8 cut(s) 378, 529, 559, 601, 610, 628, 796, 799
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 2 cut(s) 105, 815
BslI CCNNNNNNNGG 2 cut(s) 166, 358
BsmFI GGGAC 2 cut(s) 105, 815
BsmI GAATGC 2 cut(s) 537, 636
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 169, 472
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 4 cut(s) 115, 317, 343, 850
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 301, 490
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 726
BssMI GATC 2 cut(s) 169, 472
BssNI GRCGYC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 2 cut(s) 493, 695
Bst4CI ACNGT 6 cut(s) 17, 249, 442, 543, 749, 897
BstACI GRCGYC 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 6 cut(s) 102, 161, 304, 330, 338, 837
BstDSI CCRYGG 1 cut(s) 726
BstF5I GGATG 3 cut(s) 279, 490, 763
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 2 cut(s) 172, 475
BstMBI GATC 2 cut(s) 169, 472
BstMWI GCNNNNNNNGC 7 cut(s) 136, 553, 595, 598, 607, 616, 781
BstNI CCWGG 2 cut(s) 493, 695
BstPAI GACNNNNGTC 1 cut(s) 862
BstSCI CCNGG 3 cut(s) 269, 491, 693
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 8 cut(s) 378, 529, 559, 601, 610, 628, 796, 799
BstV2I GAAGAC 3 cut(s) 66, 643, 861
Bsu36I CCTNAGG 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 726
BtsCI GGATG 3 cut(s) 279, 490, 763
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 3 cut(s) 407, 447, 754
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 461, 691
Csp6I GTAC 1 cut(s) 674
CviAII CATG 5 cut(s) 166, 233, 527, 670, 727
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 6 cut(s) 102, 161, 304, 330, 338, 837
DpnI GATC 2 cut(s) 171, 474
DpnII GATC 2 cut(s) 169, 472
DriI GACNNNNNGTC 2 cut(s) 117, 689
Eam1105I GACNNNNNGTC 2 cut(s) 117, 689
Eco130I CCWWGG 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 461, 691
Eco81I CCTNAGG 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 491, 693
EcoT14I CCWWGG 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 5 cut(s) 169, 236, 530, 673, 730
FaqI GGGAC 2 cut(s) 105, 815
FatI CATG 5 cut(s) 165, 232, 526, 669, 726
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 9 cut(s) 243, 367, 518, 548, 590, 599, 617, 785, 788
FokI GGATG 3 cut(s) 286, 497, 750
Fsp4HI GCNGC 9 cut(s) 243, 367, 518, 548, 590, 599, 617, 785, 788
FspBI CTAG 2 cut(s) 114, 467
GlaI GCGC 1 cut(s) 54
GluI GCNGC 9 cut(s) 243, 367, 518, 548, 590, 599, 617, 785, 788
GsuI CTGGAG 1 cut(s) 475
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 5 cut(s) 169, 236, 530, 673, 730
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 2 cut(s) 644, 754
HindII GTYRAC 2 cut(s) 644, 754
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 4 cut(s) 118, 604, 811, 847
HpaII CCGG 1 cut(s) 271
Hpy166II GTNNAC 4 cut(s) 6, 32, 644, 754
Hpy188I TCNGA 2 cut(s) 307, 718
Hpy188III TCNNGA 4 cut(s) 23, 89, 233, 700
Hpy8I GTNNAC 4 cut(s) 6, 32, 644, 754
HpyAV CCTTC 3 cut(s) 290, 443, 751
HpyCH4III ACNGT 6 cut(s) 17, 249, 442, 543, 749, 897
HpyCH4IV ACGT 3 cut(s) 8, 95, 640
HpyF10VI GCNNNNNNNGC 7 cut(s) 136, 553, 595, 598, 607, 616, 781
HpyF3I CTNAG 6 cut(s) 102, 161, 304, 330, 338, 837
HpySE526I ACGT 3 cut(s) 8, 95, 640
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 5 cut(s) 169, 236, 530, 673, 730
HspAI GCGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 2 cut(s) 169, 472
LmnI GCTCC 2 cut(s) 494, 715
Lsp1109I GCAGC 8 cut(s) 378, 529, 559, 601, 610, 628, 796, 799
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 114, 467
MaeII ACGT 3 cut(s) 8, 95, 640
MaeIII GTNAC 5 cut(s) 96, 389, 537, 720, 891
MalI GATC 2 cut(s) 171, 474
MboI GATC 2 cut(s) 169, 472
MboII GAAGA 4 cut(s) 71, 436, 648, 861
MfeI CAATTG 3 cut(s) 315, 411, 770
MhlI GDGCHC 1 cut(s) 34
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 5 cut(s) 111, 129, 170, 313, 474
MroXI GAANNNNTTC 1 cut(s) 428
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 3 cut(s) 271, 493, 695
MunI CAATTG 3 cut(s) 315, 411, 770
Mva1269I GAATGC 2 cut(s) 537, 636
MvaI CCWGG 2 cut(s) 493, 695
MwoI GCNNNNNNNGC 7 cut(s) 136, 553, 595, 598, 607, 616, 781
NciI CCSGG 1 cut(s) 271
NcoI CCATGG 1 cut(s) 726
NdeII GATC 2 cut(s) 169, 472
NlaIII CATG 5 cut(s) 169, 236, 530, 673, 730
NlaIV GGNNCC 2 cut(s) 301, 490
NmuCI GTSAC 2 cut(s) 537, 891
PagI TCATGA 1 cut(s) 232
PctI GAATGC 2 cut(s) 537, 636
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 3 cut(s) 604, 811, 847
PfoI TCCNGGA 1 cut(s) 491
PkrI GCNGC 9 cut(s) 244, 368, 519, 549, 591, 600, 618, 786, 789
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PshAI GACNNNNGTC 1 cut(s) 862
Psp6I CCWGG 2 cut(s) 491, 693
PspGI CCWGG 2 cut(s) 491, 693
PspN4I GGNNCC 2 cut(s) 301, 490
PspPI GGNCC 2 cut(s) 461, 691
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
SatI GCNGC 9 cut(s) 243, 367, 518, 548, 590, 599, 617, 785, 788
Sau3AI GATC 2 cut(s) 169, 472
Sau96I GGNCC 2 cut(s) 461, 691
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 3 cut(s) 271, 493, 695
SduI GDGCHC 1 cut(s) 34
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 461, 691
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 804
SspMI CTAG 2 cut(s) 114, 467
StyD4I CCNGG 3 cut(s) 269, 491, 693
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 6 cut(s) 17, 249, 442, 543, 749, 897
TaiI ACGT 3 cut(s) 11, 98, 643
TaqI TCGA 2 cut(s) 571, 809
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 3 cut(s) 604, 811, 847
TscAI CASTG 3 cut(s) 407, 447, 754
TseFI GTSAC 2 cut(s) 537, 891
TseI GCWGC 8 cut(s) 366, 517, 547, 589, 598, 616, 784, 787
Tsp45I GTSAC 2 cut(s) 537, 891
TspDTI ATGAA 2 cut(s) 59, 515
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 3 cut(s) 407, 447, 754
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 461, 691
XapI RAATTY 5 cut(s) 74, 496, 522, 792, 885
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 2 cut(s) 114, 467
ZraI GACGTC 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.