RchiOBHm_Chr2g0110871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005483
Physical Location & Seq
Reverse (-)
22540221 .. 22541376
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48449

Sequence Viewer

Length: 348 bp
ATGCAGATTCATTCAAAAACAGCTTTTGGTTTTGGATCAAGATATGGAGAATCTGAAATTGAAAATAAGCCACCGAGGTCTAAAAATGAAGAGCTGCTTGAGACCTGGTATAATCAGGTTATTGAGAGACATAGGGCTAGCAAACCGCTTAGGTTGTCATCAGCAGACCGAGAATCAGAGAAACGTACTCCAGAGGAGATGTCTGATTATCTTAAGCTTGCTGTGAAGCATAAGAAAAGGTGTTTAGCATTCAAAGAAGATCAGTATGTGGGATGTGGAAACCCCCTCCTAGAAAATGCATCACAGAATCCATATTCTGTTTTAGATGATATGACGCAGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

115

Amino Acids

13.31

Weight (kDa)

6.31

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AclWI GGATC 1 cut(s) 43
AfaI GTAC 1 cut(s) 187
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 3 cut(s) 15, 62, 253
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 3 cut(s) 23, 94, 217
AluI AGCT 3 cut(s) 23, 94, 217
Alw26I GTCTC 2 cut(s) 95, 121
AlwI GGATC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 94
AsuNHI GCTAGC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 95, 121
BfaI CTAG 2 cut(s) 138, 290
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 308
BmtI GCTAGC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 95, 121
BsmI GAATGC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 35, 259
BspACI CCGC 1 cut(s) 146
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 35, 259
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 139, 219
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 2 cut(s) 38, 262
BstMAI GTCTC 2 cut(s) 95, 121
BstMBI GATC 2 cut(s) 35, 259
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 139, 219
CseI GACGC 1 cut(s) 343
CsiI ACCWGGT 1 cut(s) 104
Csp6I GTAC 1 cut(s) 186
CviJI RGCY 5 cut(s) 23, 70, 94, 137, 217
CviKI_1 RGCY 5 cut(s) 23, 70, 94, 137, 217
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 37, 261
DpnII GATC 2 cut(s) 35, 259
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 301
FaiI YATR 7 cut(s) 45, 111, 132, 231, 267, 313, 332
FalI AAGNNNNNCTT 2 cut(s) 81, 113
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 2 cut(s) 138, 290
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 174
HgaI GACGC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 7, 50, 173, 307
Hpy188I TCNGA 4 cut(s) 55, 178, 205, 343
Hpy188III TCNNGA 2 cut(s) 39, 191
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 4, 299
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 184
Kzo9I GATC 2 cut(s) 35, 259
LguI GCTCTTC 1 cut(s) 84
LpnPI CCDG 4 cut(s) 91, 101, 118, 204
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 308
MabI ACCWGGT 1 cut(s) 104
MaeI CTAG 2 cut(s) 138, 290
MaeII ACGT 1 cut(s) 184
MalI GATC 2 cut(s) 37, 261
MboI GATC 2 cut(s) 35, 259
MboII GAAGA 2 cut(s) 101, 269
MluCI AATT 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 3 cut(s) 69, 187, 296
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 106
NdeII GATC 2 cut(s) 35, 259
NheI GCTAGC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 7, 50, 173, 307
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 35, 259
ScrFI CCNGG 1 cut(s) 106
SetI ASST 9 cut(s) 25, 80, 96, 107, 120, 155, 187, 219, 242
SexAI ACCWGGT 1 cut(s) 104
SfaNI GCATC 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 98, 212
SmoI CTYRAG 2 cut(s) 98, 212
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 146
SspMI CTAG 2 cut(s) 138, 290
StyD4I CCNGG 1 cut(s) 104
TaiI ACGT 1 cut(s) 187
TaqII GACCGA 1 cut(s) 183
TasI AATT 1 cut(s) 57
TfiI GAWTC 4 cut(s) 7, 50, 173, 307
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 102
Tth111I GACNNNGTC 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 212
XspI CTAG 2 cut(s) 138, 290
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.