Rh2CG225100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005483
Physical Location & Seq
Reverse (-)
22784995 .. 22786955
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG225100.1

Sequence Viewer

Length: 441 bp
ATGCATGATAATGGTCACTTGCATGCTGATGACGTGTACTTCACTCTCCAGAATTCTTCCGCAGAAGGAGTTCAGGTTCAACAGCGCGACGCGTCCAAGATTCATTCAAAAACAGCTTTTGGTTTTGGATCAAGATATGGAGAATCTGAAATTGAAAATAAGCCACCGAGGTCTAAAAATGAAGAGCTGCTTGAGACCTGGTATAATCAGGTTATTGAGAGACATAGGGCTAGCAAACCGCTTAGGTTGTCATCAGCAGACCGAGAATCAGAGAAACGTACTCCAGAGGAGATGTCTGATTATCTTAAGCTTGCTGTGAAGCATAAGAAAAGGTGTTTAGCATTCAAAGAAGATCAGTATGTGGGATGTGGAAACCCCCTCCTAGAAAATGCATCACAGAATCCATATTCTGTTTTAGATGATATGACGCAGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

146

Amino Acids

16.73

Weight (kDa)

5.87

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 87, 92
AciI CCGC 2 cut(s) 60, 239
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 2 cut(s) 38, 280
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 33, 90
AgsI TTSAA 4 cut(s) 80, 108, 155, 346
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 3 cut(s) 116, 187, 310
AluI AGCT 3 cut(s) 116, 187, 310
Alw26I GTCTC 2 cut(s) 188, 214
AlwI GGATC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 87
AsuNHI GCTAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 188, 214
BfaI CTAG 2 cut(s) 231, 383
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 401
BmtI GCTAGC 1 cut(s) 234
BpmI CTGGAG 2 cut(s) 32, 267
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 87, 92
BsmAI GTCTC 2 cut(s) 188, 214
BsmI GAATGC 1 cut(s) 341
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 128, 352
BspACI CCGC 2 cut(s) 60, 239
BspFNI CGCG 2 cut(s) 87, 92
BspOI GCTAGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 128, 352
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 24, 232, 312
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 371
BstFNI CGCG 2 cut(s) 87, 92
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 131, 355
BstMAI GTCTC 2 cut(s) 188, 214
BstMBI GATC 2 cut(s) 128, 352
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 197
BstUI CGCG 2 cut(s) 87, 92
BstV1I GCAGC 1 cut(s) 174
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 371
Cac8I GCNNGC 3 cut(s) 24, 232, 312
CfoI GCGC 1 cut(s) 87
CseI GACGC 3 cut(s) 81, 98, 436
CsiI ACCWGGT 1 cut(s) 197
Csp6I GTAC 2 cut(s) 37, 279
CviAII CATG 2 cut(s) 5, 23
CviJI RGCY 5 cut(s) 116, 163, 187, 230, 310
CviKI_1 RGCY 5 cut(s) 116, 163, 187, 230, 310
CviQI GTAC 2 cut(s) 37, 279
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 130, 354
DpnII GATC 2 cut(s) 128, 352
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 197
EcoT22I ATGCAT 2 cut(s) 6, 394
FaeI CATG 2 cut(s) 8, 26
FaiI YATR 9 cut(s) 6, 24, 138, 204, 225, 324, 360, 406, 425
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 4, 22
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 2 cut(s) 231, 383
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 32, 267
HgaI GACGC 3 cut(s) 81, 98, 436
HhaI GCGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 8, 26
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 4 cut(s) 100, 143, 266, 400
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 148, 271, 298, 436
Hpy188III TCNNGA 3 cut(s) 49, 132, 284
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 33, 277
HpyCH4V TGCA 3 cut(s) 4, 22, 392
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 33, 277
Hsp92II CATG 2 cut(s) 8, 26
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 128, 352
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 59, 62, 184, 194, 211, 297
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 401
MabI ACCWGGT 1 cut(s) 197
MaeI CTAG 2 cut(s) 231, 383
MaeII ACGT 2 cut(s) 33, 277
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 130, 354
MboI GATC 2 cut(s) 128, 352
MboII GAAGA 3 cut(s) 48, 194, 362
MluCI AATT 2 cut(s) 52, 150
MluI ACGCGT 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 3 cut(s) 162, 280, 389
Mph1103I ATGCAT 2 cut(s) 6, 394
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 3 cut(s) 9, 21, 27
MspCI CTTAAG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 2 cut(s) 87, 92
NdeII GATC 2 cut(s) 128, 352
NheI GCTAGC 1 cut(s) 230
NlaIII CATG 2 cut(s) 8, 26
NmuCI GTSAC 1 cut(s) 14
NsiI ATGCAT 2 cut(s) 6, 394
NspI RCATGY 1 cut(s) 26
PaeI GCATGC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 4 cut(s) 100, 143, 266, 400
PflFI GACNNNGTC 1 cut(s) 430
PkrI GCNGC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 430
RsaI GTAC 2 cut(s) 38, 280
RsaNI GTAC 2 cut(s) 37, 279
RseI CAYNNNNRTG 3 cut(s) 9, 21, 27
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 2 cut(s) 128, 352
ScrFI CCNGG 1 cut(s) 199
SexAI ACCWGGT 1 cut(s) 197
SfaNI GCATC 1 cut(s) 401
SmiMI CAYNNNNRTG 3 cut(s) 9, 21, 27
SmlI CTYRAG 2 cut(s) 191, 305
SmoI CTYRAG 2 cut(s) 191, 305
SphI GCATGC 1 cut(s) 26
Sse9I AATT 2 cut(s) 52, 150
SsiI CCGC 2 cut(s) 60, 239
SspMI CTAG 2 cut(s) 231, 383
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 2 cut(s) 36, 280
TaqII GACCGA 1 cut(s) 276
TasI AATT 2 cut(s) 52, 150
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 4 cut(s) 100, 143, 266, 400
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 92, 195
Tth111I GACNNNGTC 1 cut(s) 430
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 231, 383
Zsp2I ATGCAT 2 cut(s) 6, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.