Rorug02G0170300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005483
Physical Location & Seq
Reverse (-)
15307646 .. 15322951
15306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0170300.1

Sequence Viewer

Length: 1164 bp
ATGTCGACTGGTTTGGCAAAGAGAAAGATGGTGACAGTGTTAAGCATTGATGGAGGTGGTATTAGAGGCATCATCCCCGGCACTATCCTCGGTTTTCTCGAATCCAAGCTTCAGGATTTGGATGGCCCCAGTGCAAGACTTGCAGATTATTTTGATATAATCGCCGGAACTAGCACAGGTGGGTTGGTCACCACCATGCTTACAGCTCCCAACAAGGACAATCGACCCATGTATGAAGCAAAGGACATCAATAACTTCTACTTGGAACAAACACCTAAGATTTTCCCTCAGAAGAGTCGAAATAACTTCTTGACATCAATTCAAAGTTTGGTTGGTGCGGTGACCGGACCAAAATACGACGGGAAGTACCTGCGAACATTGACGACTGGGTTGCTTGGCGACCTCACTATAAAAGAAACTCTAACCAATGTCATCATTCCAACGTTCGATATCAAACACCTTCAGCCTGTGATTTTCTCAACCATTGATGCAAAAGAAAGTTCTTTGAAAAATGCAAAGCTTTCAGATATCTGCGTCAGTACCTCTGCAGCTCCAACTTTTCTCCCCGCACACTACTTTGAGGTTACGGACAAACAGGGAACAACTCGTTCTTTTGATCTCATTGATGGTGGGGTCGCTGCAAACAATCCTACAATGATGGCCATAAGCCACATAAACAGAGAGATGTTGAAGCACGGCTCAGAACCAATGGATGCTAATCGGTTGCTAGTGCTATCATTGGGCACAGGCACTGCCAAGTTCGAAGGGAAGTACAGTGCAACCAAGGCCTCAAAATGGGGTTTGATCAATTGGATGTTTGACAATGGGAGCACACCTATGATCGATATCTTTACCGATGCAAGTTCGGATATGGTTGACATTCATGTCTCCACTCTCTTTCAGTCCCTCAATGCCAAAGACAACTACCTACGTGTTCAGGATGACAGTTTGATCGGTGAGGAGTCATCGGTGGATATTGCAACGGAGAAAAATCTGAAGAGGCTTGTGGAGATCGGGAATGGGCTGTTGAAAAAGCCGGTGTCAAGGGTAAATTTGGATAACGGGAGGTATGAGAAATCTGAAGGAGAAGGTACCTATGAAGAAGCACTGGTCGATTTTGCCAAACGGCTCGTGGAGGGGAAGAAGCACAGGCAATACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

387

Amino Acids

42.45

Weight (kDa)

6.62

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 14 - 222 1e-24 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 378
Acc65I GGTACC 1 cut(s) 1091
AccB1I GGYRCC 1 cut(s) 1091
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 338, 567
AclI AACGTT 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 1051
AcuI CTGAAG 4 cut(s) 95, 446, 1016, 1101
AfaI GTAC 4 cut(s) 368, 541, 773, 1093
AfiI CCNNNNNNNGG 1 cut(s) 795
AflIII ACRYGT 1 cut(s) 931
AgsI TTSAA 4 cut(s) 323, 508, 691, 1030
AluBI AGCT 4 cut(s) 109, 206, 520, 551
AluI AGCT 4 cut(s) 109, 206, 520, 551
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 1 cut(s) 892
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 3 cut(s) 124, 660, 786
ApeKI GCWGC 2 cut(s) 548, 638
ApoI RAATTY 1 cut(s) 1051
Asp718I GGTACC 1 cut(s) 1091
AspS9I GGNCC 2 cut(s) 125, 347
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 4 cut(s) 43, 181, 352, 968
AsuII TTCGAA 1 cut(s) 762
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 746
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 1091
BauI CACGAG 1 cut(s) 1130
Bbv12I GWGCWC 1 cut(s) 833
BbvI GCAGC 2 cut(s) 560, 625
BccI CCATC 5 cut(s) 22, 44, 116, 620, 652
BceAI ACGGC 2 cut(s) 712, 1142
BcgI CGANNNNNNTGC 4 cut(s) 70, 104, 373, 407
BclI TGATCA 1 cut(s) 804
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 892
BfaI CTAG 2 cut(s) 171, 728
BfmI CTRYAG 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 378
BisI GCNGC 2 cut(s) 549, 639
BlsI GCNGC 2 cut(s) 550, 640
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 125, 347
BmiI GGNNCC 2 cut(s) 127, 1093
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 2 cut(s) 123, 396
BmsI GCATC 4 cut(s) 78, 478, 703, 847
BmuI ACTGGG 2 cut(s) 123, 396
Bpu14I TTCGAA 1 cut(s) 762
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 843
BsaAI YACGTR 1 cut(s) 932
BsaBI GATNNNNATC 2 cut(s) 717, 845
BsaJI CCNNGG 3 cut(s) 76, 88, 783
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 795
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 4 cut(s) 13, 129, 391, 1113
Bse8I GATNNNNATC 2 cut(s) 717, 845
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 3 cut(s) 76, 88, 783
BseGI GGATG 5 cut(s) 72, 127, 718, 819, 946
BseJI GATNNNNATC 2 cut(s) 717, 845
BseLI CCNNNNNNNGG 1 cut(s) 795
BseMII CTCAG 2 cut(s) 302, 714
BseNI ACTGG 4 cut(s) 13, 129, 391, 1113
BseRI GAGGAG 1 cut(s) 974
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 2 cut(s) 560, 625
BshFI GGCC 3 cut(s) 126, 662, 788
BshNI GGYRCC 1 cut(s) 1091
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 833
BsiSI CCGG 4 cut(s) 78, 165, 345, 1037
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 1 cut(s) 795
BsmAI GTCTC 1 cut(s) 892
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 3 cut(s) 126, 662, 788
Bsp119I TTCGAA 1 cut(s) 762
Bsp1286I GDGCHC 2 cut(s) 746, 833
Bsp143I GATC 5 cut(s) 616, 804, 840, 951, 1011
BspACI CCGC 2 cut(s) 338, 567
BspANI GGCC 3 cut(s) 126, 662, 788
BspCNI CTCAG 2 cut(s) 301, 713
BspDI ATCGAT 1 cut(s) 843
BspLI GGNNCC 2 cut(s) 127, 1093
BspMAI CTGCAG 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 378
BspT104I TTCGAA 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 1091
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 4 cut(s) 13, 129, 391, 1113
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 3 cut(s) 76, 88, 783
BssMI GATC 5 cut(s) 616, 804, 840, 951, 1011
BssSI CACGAG 1 cut(s) 1130
BssT1I CCWWGG 1 cut(s) 783
Bst2BI CACGAG 1 cut(s) 1130
Bst4CI ACNGT 3 cut(s) 37, 776, 947
Bst6I CTCTTC 2 cut(s) 287, 992
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 932
BstBI TTCGAA 1 cut(s) 762
BstDEI CTNAG 3 cut(s) 276, 288, 700
BstEII GGTNACC 2 cut(s) 187, 340
BstF5I GGATG 5 cut(s) 72, 127, 718, 819, 946
BstKTI GATC 5 cut(s) 619, 807, 843, 954, 1014
BstMAI GTCTC 1 cut(s) 892
BstMBI GATC 5 cut(s) 616, 804, 840, 951, 1011
BstMWI GCNNNNNNNGC 2 cut(s) 140, 785
BstPI GGTNACC 2 cut(s) 187, 340
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 2 cut(s) 560, 625
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 3 cut(s) 126, 662, 788
BsuTUI ATCGAT 1 cut(s) 843
BtsCI GGATG 5 cut(s) 72, 127, 718, 819, 946
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 5 cut(s) 42, 136, 750, 781, 1106
BveI ACCTGC 1 cut(s) 378
CaiI CAGNNNCTG 1 cut(s) 752
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 2 cut(s) 125, 347
ClaI ATCGAT 1 cut(s) 843
CseI GACGC 1 cut(s) 523
Csp6I GTAC 4 cut(s) 367, 540, 772, 1092
CviAII CATG 3 cut(s) 196, 229, 884
CviQI GTAC 4 cut(s) 367, 540, 772, 1092
DdeI CTNAG 3 cut(s) 276, 288, 700
DpnI GATC 5 cut(s) 618, 806, 842, 953, 1013
DpnII GATC 5 cut(s) 616, 804, 840, 951, 1011
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 287, 992
EarI CTCTTC 2 cut(s) 287, 992
Eco130I CCWWGG 1 cut(s) 783
Eco147I AGGCCT 1 cut(s) 788
Eco32I GATATC 3 cut(s) 451, 529, 847
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 4 cut(s) 95, 446, 1016, 1101
Eco91I GGTNACC 2 cut(s) 187, 340
EcoO65I GGTNACC 2 cut(s) 187, 340
EcoRV GATATC 3 cut(s) 451, 529, 847
EcoT14I CCWWGG 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 3 cut(s) 199, 232, 887
FaqI GGGAC 1 cut(s) 889
FatI CATG 3 cut(s) 195, 228, 883
FauI CCCGC 1 cut(s) 574
FbaI TGATCA 1 cut(s) 804
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 549, 639
FokI GGATG 5 cut(s) 59, 134, 725, 826, 953
Fsp4HI GCNGC 2 cut(s) 549, 639
FspBI CTAG 2 cut(s) 171, 728
GluI GCNGC 2 cut(s) 549, 639
HaeIII GGCC 3 cut(s) 126, 662, 788
HapII CCGG 4 cut(s) 78, 165, 345, 1037
HgaI GACGC 1 cut(s) 523
Hin1II CATG 3 cut(s) 199, 232, 887
HincII GTYRAC 2 cut(s) 6, 877
HindII GTYRAC 2 cut(s) 6, 877
HindIII AAGCTT 2 cut(s) 107, 518
HinfI GANTC 3 cut(s) 101, 295, 962
HpaII CCGG 4 cut(s) 78, 165, 345, 1037
HphI GGTGA 4 cut(s) 43, 181, 352, 968
Hpy166II GTNNAC 2 cut(s) 6, 877
Hpy188I TCNGA 6 cut(s) 291, 526, 703, 868, 996, 1081
Hpy188III TCNNGA 5 cut(s) 98, 113, 310, 938, 1015
Hpy8I GTNNAC 2 cut(s) 6, 877
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 4 cut(s) 470, 758, 1076, 1082
HpyCH4III ACNGT 3 cut(s) 37, 776, 947
HpyCH4IV ACGT 2 cut(s) 443, 931
HpyCH4V TGCA 9 cut(s) 134, 143, 491, 515, 548, 641, 779, 860, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 785
HpyF3I CTNAG 3 cut(s) 276, 288, 700
HpySE526I ACGT 2 cut(s) 443, 931
Hsp92II CATG 3 cut(s) 199, 232, 887
KpnI GGTACC 1 cut(s) 1095
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 5 cut(s) 616, 804, 840, 951, 1011
LmnI GCTCC 3 cut(s) 211, 556, 828
Lsp1109I GCAGC 2 cut(s) 560, 625
LweI GCATC 4 cut(s) 78, 478, 703, 847
MaeI CTAG 2 cut(s) 171, 728
MaeII ACGT 2 cut(s) 443, 931
MaeIII GTNAC 4 cut(s) 31, 187, 340, 583
MalI GATC 5 cut(s) 618, 806, 842, 953, 1013
MboI GATC 5 cut(s) 616, 804, 840, 951, 1011
MboII GAAGA 4 cut(s) 304, 1009, 1112, 1153
MfeI CAATTG 1 cut(s) 808
MhlI GDGCHC 2 cut(s) 746, 833
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 3 cut(s) 318, 808, 1051
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 2 cut(s) 304, 971
MmeI TCCRAC 2 cut(s) 464, 578
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 194, 836
Msp20I TGGCCA 1 cut(s) 662
MspI CCGG 4 cut(s) 78, 165, 345, 1037
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 808
MwoI GCNNNNNNNGC 2 cut(s) 140, 785
NciI CCSGG 1 cut(s) 78
NdeII GATC 5 cut(s) 616, 804, 840, 951, 1011
NlaIII CATG 3 cut(s) 199, 232, 887
NlaIV GGNNCC 2 cut(s) 127, 1093
NmuCI GTSAC 3 cut(s) 31, 187, 340
NspV TTCGAA 1 cut(s) 762
PceI AGGCCT 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 550, 640
PleI GAGTC 2 cut(s) 303, 970
PpsI GAGTC 2 cut(s) 303, 970
Ppu21I YACGTR 1 cut(s) 932
Psp1406I AACGTT 1 cut(s) 443
PspEI GGTNACC 2 cut(s) 187, 340
PspN4I GGNNCC 2 cut(s) 127, 1093
PspPI GGNCC 2 cut(s) 125, 347
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 368, 541, 773, 1093
RsaNI GTAC 4 cut(s) 367, 540, 772, 1092
RseI CAYNNNNRTG 2 cut(s) 194, 836
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 549, 639
Sau3AI GATC 5 cut(s) 616, 804, 840, 951, 1011
Sau96I GGNCC 2 cut(s) 125, 347
SchI GAGTC 2 cut(s) 304, 971
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 746, 833
SfaNI GCATC 4 cut(s) 78, 478, 703, 847
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 194, 836
Sse9I AATT 3 cut(s) 318, 808, 1051
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 2 cut(s) 338, 567
SspMI CTAG 2 cut(s) 171, 728
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 3 cut(s) 37, 776, 947
TaiI ACGT 2 cut(s) 446, 934
TaqI TCGA 8 cut(s) 5, 99, 223, 298, 447, 762, 843, 1113
TasI AATT 3 cut(s) 318, 808, 1051
TatI WGTACW 1 cut(s) 771
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 5 cut(s) 42, 136, 757, 781, 1113
TseFI GTSAC 3 cut(s) 31, 187, 340
TseI GCWGC 2 cut(s) 548, 638
Tsp45I GTSAC 3 cut(s) 31, 187, 340
TspDTI ATGAA 3 cut(s) 249, 872, 1113
TspGWI ACGGA 2 cut(s) 602, 998
TspRI CASTG 5 cut(s) 42, 136, 757, 781, 1113
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 1129
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 171, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.