Rh2BG233100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005483
Physical Location & Seq
Reverse (-)
23108786 .. 23109313
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG233100.1

Sequence Viewer

Length: 528 bp
ATGCAGATTCATTCAAAAACAGCTTTTGGTTTTGGATCAAGATATGGAGAATCTGAAATTGAAAATAAGCCACCGAGGTCTAAAAATGAAGAGCTGCTTGAGACCTGGTATAATCAGGTTATTGAGAGACATAGGGCTAGCAAACTGCTTAGGTTGTCATCAGCAGACCGAGAATCAGAGAAACGTACTCCAGAGGAGATGTCTGCTTATCTTAAGCCTGCTGTGAAGCATAAGAAAAGGTGTTTAGCATTCAAAGAAGATCAGTATGTGGGATATGGAAACCCCCTCCTAGAAAATGCATCACAGAATCCATATTCTGTTTTAGATGATAGTAGTTCAATTGATCATGAAGCATCTTTTTTCCCAGAAACAATGTTTACGTTGAACTGTGTTCCTGATAGTGCACTTCCACCTATGAATAGAGTGCAAGACGACCAAAAAGTTTTCTCTCAGTTGCTAAGCTGTCATATCCGTAAATTGGGTAGCAGCTTGAAATGCAGCATATTCCTGGAATGTAGTCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

175

Amino Acids

20.01

Weight (kDa)

6.59

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 43
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 478
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 6 cut(s) 15, 62, 253, 339, 385, 493
AjnI CCWGG 2 cut(s) 104, 507
AluBI AGCT 4 cut(s) 23, 94, 462, 489
AluI AGCT 4 cut(s) 23, 94, 462, 489
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 95, 121
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 94, 486, 498
AsuNHI GCTAGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 3 cut(s) 81, 498, 510
BciT130I CCWGG 2 cut(s) 106, 509
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 95, 121
BfaI CTAG 2 cut(s) 138, 290
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 3 cut(s) 95, 487, 499
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 3 cut(s) 96, 488, 500
Bme1390I CCNGG 2 cut(s) 106, 509
BmrFI CCNGG 2 cut(s) 106, 509
BmsI GCATC 2 cut(s) 308, 362
BmtI GCTAGC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseBI CCWGG 2 cut(s) 106, 509
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 81, 498, 510
BsiHKAI GWGCWC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 95, 121
BsmI GAATGC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 3 cut(s) 35, 259, 343
Bsp1720I GCTNAGC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 463
BspHI TCATGA 1 cut(s) 346
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 35, 259, 343
Bst2UI CCWGG 2 cut(s) 106, 509
Bst4CI ACNGT 2 cut(s) 389, 524
Bst6I CTCTTC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 139, 219
BstDEI CTNAG 3 cut(s) 149, 450, 458
BstKTI GATC 3 cut(s) 38, 262, 346
BstMAI GTCTC 2 cut(s) 95, 121
BstMBI GATC 3 cut(s) 35, 259, 343
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstNI CCWGG 2 cut(s) 106, 509
BstSCI CCNGG 2 cut(s) 104, 507
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 81, 498, 510
Cac8I GCNNGC 2 cut(s) 139, 219
CciI TCATGA 1 cut(s) 346
CsiI ACCWGGT 1 cut(s) 104
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 347
CviJI RGCY 7 cut(s) 23, 70, 94, 137, 217, 462, 489
CviKI_1 RGCY 7 cut(s) 23, 70, 94, 137, 217, 462, 489
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 149, 450, 458
DpnI GATC 3 cut(s) 37, 261, 345
DpnII GATC 3 cut(s) 35, 259, 343
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 104, 507
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 1 cut(s) 350
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 95, 487, 499
Fsp4HI GCNGC 3 cut(s) 95, 487, 499
FspBI CTAG 2 cut(s) 138, 290
GluI GCNGC 3 cut(s) 95, 487, 499
GsuI CTGGAG 1 cut(s) 174
Hin1II CATG 1 cut(s) 350
HinfI GANTC 4 cut(s) 7, 50, 173, 307
Hpy166II GTNNAC 2 cut(s) 378, 404
Hpy188I TCNGA 2 cut(s) 55, 178
Hpy188III TCNNGA 4 cut(s) 39, 191, 347, 395
Hpy8I GTNNAC 2 cut(s) 378, 404
HpyCH4III ACNGT 2 cut(s) 389, 524
HpyCH4IV ACGT 2 cut(s) 184, 380
HpyCH4V TGCA 5 cut(s) 4, 299, 404, 427, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 3 cut(s) 149, 450, 458
HpySE526I ACGT 2 cut(s) 184, 380
Hsp92II CATG 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 35, 259, 343
LguI GCTCTTC 1 cut(s) 84
LpnPI CCDG 9 cut(s) 91, 101, 118, 204, 231, 378, 408, 494, 521
Lsp1109I GCAGC 3 cut(s) 81, 498, 510
LweI GCATC 2 cut(s) 308, 362
MabI ACCWGGT 1 cut(s) 104
MaeI CTAG 2 cut(s) 138, 290
MaeII ACGT 2 cut(s) 184, 380
MaeIII GTNAC 1 cut(s) 518
MalI GATC 3 cut(s) 37, 261, 345
MboI GATC 3 cut(s) 35, 259, 343
MboII GAAGA 2 cut(s) 101, 269
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 3 cut(s) 57, 339, 476
MnlI CCTC 3 cut(s) 69, 187, 296
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 2 cut(s) 213, 526
MspCI CTTAAG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 106, 509
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 2 cut(s) 106, 509
MwoI GCNNNNNNNGC 1 cut(s) 495
NdeII GATC 3 cut(s) 35, 259, 343
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 7, 50, 173, 307
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 3 cut(s) 96, 488, 500
Psp6I CCWGG 2 cut(s) 104, 507
PspGI CCWGG 2 cut(s) 104, 507
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 213, 526
SatI GCNGC 3 cut(s) 95, 487, 499
Sau3AI GATC 3 cut(s) 35, 259, 343
ScrFI CCNGG 2 cut(s) 106, 509
SduI GDGCHC 1 cut(s) 406
SexAI ACCWGGT 1 cut(s) 104
SfaNI GCATC 2 cut(s) 308, 362
SmlI CTYRAG 2 cut(s) 98, 212
SmoI CTYRAG 2 cut(s) 98, 212
Sse9I AATT 3 cut(s) 57, 339, 476
SspMI CTAG 2 cut(s) 138, 290
StyD4I CCNGG 2 cut(s) 104, 507
TaaI ACNGT 2 cut(s) 389, 524
TaiI ACGT 2 cut(s) 187, 383
TaqII GACCGA 1 cut(s) 183
TasI AATT 3 cut(s) 57, 339, 476
TfiI GAWTC 4 cut(s) 7, 50, 173, 307
Tru1I TTAA 2 cut(s) 213, 526
Tru9I TTAA 2 cut(s) 213, 526
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 3 cut(s) 94, 486, 498
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 102, 363, 431
TspGWI ACGGA 1 cut(s) 461
Vha464I CTTAAG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 402
XspI CTAG 2 cut(s) 138, 290
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.