Rh2CG225400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
22834446 .. 22867051
32606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG225400.1

Sequence Viewer

Length: 1440 bp
ATGCAGATTCAGTCAAAAACAGCTTTTGGTTTTGGATCAAGATATGGAGAATCTGAAATTGATAATAAGCCACCAAGGTTTAAAAATGAAGAGCTGCCTGAGACCTGGTATAATCAGGTTATTGAGAGACATAGGGCTAGCAAACCGCATAGGTTGTCATCAGCAGACCGAGAATCAGAGAAACGTACTCCAGAGGAGATGTCTGCTTATCTTAAGCTTGCTGTGAAGCATAAGAAAAGGTGTTTAGCATTCAAAGAAGATCAGTATGTGGCATATGGAAATCCCCTCCAAGAAAATGCATCACAGAATCCACATTCTGTTTTAGATGGTAGTAGTTCAATTGATCATGAAGCATCTTTTTTCCCAGAAACAATGTTTACGTTGAACTGTGTTCCTGATAGTGCACTTCCACCTATGAATAGAGTGCAAGACGACCAAAAAGTTGAATTTTATGGAGTTCTTGATACGTTACCTCAGGCTTTGACTAGGAGTCCCGTTATGCTTGAGAGGCTTGGTATAAGACCTGAATACCTTAACATGGATCAAGGAGGAAGCTTACATCGTGGAAAGAACGGGTCTGCAGGGAACAAAAGTTGTCTTACTCATGAGCAAGCGGCACAGTTATCTCAAAAGGTAATAGCCCGGATGCTGACAAATGTGGGATTTGAAGGTTCCTCAGAAGTTCCAATTGAAGTTTTCTCTCAGTTGCTAAGCTGTCATATCCGTAAATTGGGTAGCAGCTTGAAAGTTCTTACTGATAGTTACAGAAAGCAGTGTTCAGCAATTGAACTATTAAAGATGTTCCTTCAAACAGTGGGATATAGTAATTTTGGCCCTCTAGCTGATCAAGTCAAGGATGGCTCCAGGAATTTCCATCAACAAAGTCAGCAGCAAATTCATGGAATGCAGTCACAGTTGCAGCCACAGCACCAGAACCCAATTCGACTACCCCAACAAATATCGAGACAAATGCATCCGCAGATGCAGCAGATTCAGCAAATGCAGCAAATTGCCCAATCCAAGAATGTGCCATTTCAGCAACAGCAGCAGATGGAAAGAATGCGAAGACGTCAACCATCTACTCGTGCTGGTATGGACATGGTACAGGACAGACCAATGGTCCAGGTCAAGATTGAAGCTCCATCAGAGTTACCCATGGATAGTAATGCCTTCAACAGTTTCAACAACAGACATCCACAATTGCAGTTCAGGCAGCAGCAAATTCCTGCAATGTCAAATCCTACAATGCAAAATGTCCCTGCTCAGTCAGGGAATCAGTTTAGACAGATATCTCCTTCACAAATTGCACAAATTCAATCACAGAACGCTGGTGTTCTTAGGGCTCGACCGGTGAAGGTTGAAGGTTTCCAGGAACTAATGGGTGGAGATGCTTCATCTAAGCATGATTCAGATGAAAATCGGCTGACCTCCCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

479

Amino Acids

54.37

Weight (kDa)

9.15

Isoelectric Point (pI)

64.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1072
AciI CCGC 3 cut(s) 146, 614, 977
AclWI GGATC 2 cut(s) 43, 549
AcsI RAATTY 5 cut(s) 446, 868, 894, 1221, 1311
AcyI GRCGYC 1 cut(s) 1069
AfaI GTAC 2 cut(s) 187, 1104
AfiI CCNNNNNNNGG 2 cut(s) 538, 730
AflII CTTAAG 1 cut(s) 212
AgeI ACCGGT 1 cut(s) 1348
AhdI GACNNNNNGTC 2 cut(s) 489, 1118
AjnI CCWGG 4 cut(s) 104, 863, 1122, 1368
AluBI AGCT 8 cut(s) 23, 94, 217, 555, 714, 741, 842, 1139
AluI AGCT 8 cut(s) 23, 94, 217, 555, 714, 741, 842, 1139
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 3 cut(s) 95, 121, 958
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 2 cut(s) 43, 549
AoxI GGCC 1 cut(s) 832
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 9 cut(s) 94, 738, 889, 919, 985, 1003, 1045, 1213, 1216
ApoI RAATTY 5 cut(s) 446, 868, 894, 1221, 1311
AsiGI ACCGGT 1 cut(s) 1348
AspS9I GGNCC 2 cut(s) 833, 1120
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 1 cut(s) 1363
AsuNHI GCTAGC 1 cut(s) 137
AvaII GGWCC 1 cut(s) 1120
AxyI CCTNAGG 1 cut(s) 474
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 1345
BauI CACGAG 1 cut(s) 1083
BbsI GAAGAC 1 cut(s) 1072
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 9 cut(s) 81, 750, 901, 931, 997, 1015, 1057, 1225, 1228
BccI CCATC 6 cut(s) 320, 851, 882, 1045, 1084, 1150
BcgI CGANNNNNNTGC 2 cut(s) 952, 986
BciT130I CCWGG 4 cut(s) 106, 865, 1124, 1370
BclI TGATCA 2 cut(s) 343, 844
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 3 cut(s) 95, 121, 958
BfaI CTAG 3 cut(s) 138, 486, 839
BfmI CTRYAG 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 710
Bme1390I CCNGG 5 cut(s) 106, 643, 865, 1124, 1370
Bme18I GGWCC 1 cut(s) 1120
BmeRI GACNNNNNGTC 2 cut(s) 489, 1118
BmgT120I GGNCC 2 cut(s) 833, 1120
BmiI GGNNCC 2 cut(s) 673, 862
BmrFI CCNGG 5 cut(s) 106, 643, 865, 1124, 1370
BmsI GCATC 6 cut(s) 308, 362, 636, 972, 982, 1378
BmtI GCTAGC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 1072
BpmI CTGGAG 2 cut(s) 174, 847
Bpu1102I GCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 1416
BsaHI GRCGYC 1 cut(s) 1069
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 74, 1155
BsaWI WCCGGW 1 cut(s) 1348
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 730
Bse118I RCCGGY 1 cut(s) 1348
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 1236
Bse8I GATNNNNATC 1 cut(s) 1416
BseBI CCWGG 4 cut(s) 106, 865, 1124, 1370
BseDI CCNNGG 2 cut(s) 74, 1155
BseGI GGATG 4 cut(s) 651, 862, 973, 1192
BseJI GATNNNNATC 1 cut(s) 1416
BseLI CCNNNNNNNGG 2 cut(s) 538, 730
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 5 cut(s) 90, 488, 690, 716, 1277
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 9 cut(s) 81, 750, 901, 931, 997, 1015, 1057, 1225, 1228
Bsh1285I CGRYCG 1 cut(s) 1349
BshFI GGCC 1 cut(s) 834
BshTI ACCGGT 1 cut(s) 1348
BsiEI CGRYCG 1 cut(s) 1349
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 2 cut(s) 643, 1349
BslFI GGGAC 2 cut(s) 477, 1241
BslI CCNNNNNNNGG 2 cut(s) 538, 730
BsmAI GTCTC 3 cut(s) 95, 121, 958
BsmFI GGGAC 2 cut(s) 477, 1241
BsmI GAATGC 3 cut(s) 248, 909, 1065
BsnI GGCC 1 cut(s) 834
Bso31I GGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 406, 1345
Bsp143I GATC 5 cut(s) 35, 259, 343, 541, 844
Bsp1720I GCTNAGC 1 cut(s) 710
Bsp19I CCATGG 1 cut(s) 1155
BspACI CCGC 3 cut(s) 146, 614, 977
BspANI GGCC 1 cut(s) 834
BspCNI CTCAG 5 cut(s) 91, 487, 689, 715, 1276
BspHI TCATGA 2 cut(s) 346, 604
BspLI GGNNCC 2 cut(s) 673, 862
BspMAI CTGCAG 1 cut(s) 583
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 2 cut(s) 43, 549
BspQI GCTCTTC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 1236
BsrFI RCCGGY 1 cut(s) 1348
BssAI RCCGGY 1 cut(s) 1348
BssECI CCNNGG 2 cut(s) 74, 1155
BssMI GATC 5 cut(s) 35, 259, 343, 541, 844
BssNI GRCGYC 1 cut(s) 1069
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 2 cut(s) 74, 1155
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 4 cut(s) 106, 865, 1124, 1370
Bst4CI ACNGT 5 cut(s) 389, 621, 814, 915, 1178
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 1069
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 139, 219, 612
BstDEI CTNAG 8 cut(s) 99, 474, 676, 702, 710, 1263, 1337, 1398
BstDSI CCRYGG 1 cut(s) 1155
BstF5I GGATG 4 cut(s) 651, 862, 973, 1192
BstKTI GATC 5 cut(s) 38, 262, 346, 544, 847
BstMAI GTCTC 3 cut(s) 95, 121, 958
BstMBI GATC 5 cut(s) 35, 259, 343, 541, 844
BstMCI CGRYCG 1 cut(s) 1349
BstMWI GCNNNNNNNGC 8 cut(s) 508, 925, 985, 994, 1003, 1036, 1045, 1210
BstNI CCWGG 4 cut(s) 106, 865, 1124, 1370
BstSCI CCNGG 5 cut(s) 104, 641, 863, 1122, 1368
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 9 cut(s) 81, 750, 901, 931, 997, 1015, 1057, 1225, 1228
BstV2I GAAGAC 1 cut(s) 1072
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 1155
BtsCI GGATG 4 cut(s) 651, 862, 973, 1192
BtsI GCAGTG 1 cut(s) 779
BtsIMutI CAGTG 2 cut(s) 779, 819
Cac8I GCNNGC 3 cut(s) 139, 219, 612
CciI TCATGA 2 cut(s) 346, 604
Cfr10I RCCGGY 1 cut(s) 1348
Cfr13I GGNCC 2 cut(s) 833, 1120
CsiI ACCWGGT 1 cut(s) 104
Csp6I GTAC 2 cut(s) 186, 1103
CspAI ACCGGT 1 cut(s) 1348
CviAII CATG 7 cut(s) 347, 538, 605, 899, 1099, 1156, 1403
CviQI GTAC 2 cut(s) 186, 1103
DdeI CTNAG 8 cut(s) 99, 474, 676, 702, 710, 1263, 1337, 1398
DpnI GATC 5 cut(s) 37, 261, 345, 543, 846
DpnII GATC 5 cut(s) 35, 259, 343, 541, 844
DraI TTTAAA 1 cut(s) 82
DriI GACNNNNNGTC 2 cut(s) 489, 1118
Eam1104I CTCTTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 2 cut(s) 489, 1118
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 74, 1155
Eco24I GRGCYC 1 cut(s) 1345
Eco31I GGTCTC 1 cut(s) 95
Eco32I GATATC 1 cut(s) 1290
Eco47I GGWCC 1 cut(s) 1120
Eco81I CCTNAGG 1 cut(s) 474
EcoRII CCWGG 4 cut(s) 104, 863, 1122, 1368
EcoRV GATATC 1 cut(s) 1290
EcoT14I CCWWGG 2 cut(s) 74, 1155
EcoT22I ATGCAT 2 cut(s) 301, 975
EcoT38I GRGCYC 1 cut(s) 1345
ErhI CCWWGG 2 cut(s) 74, 1155
FaeI CATG 7 cut(s) 350, 541, 608, 902, 1102, 1159, 1406
FaqI GGGAC 2 cut(s) 477, 1241
FatI CATG 7 cut(s) 346, 537, 604, 898, 1098, 1155, 1402
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 2 cut(s) 343, 844
FokI GGATG 4 cut(s) 658, 869, 960, 1179
FriOI GRGCYC 1 cut(s) 1345
FspBI CTAG 3 cut(s) 138, 486, 839
GsuI CTGGAG 2 cut(s) 174, 847
HaeIII GGCC 1 cut(s) 834
HapII CCGG 2 cut(s) 643, 1349
Hin1I GRCGYC 1 cut(s) 1069
Hin1II CATG 7 cut(s) 350, 541, 608, 902, 1102, 1159, 1406
HincII GTYRAC 1 cut(s) 1073
HindII GTYRAC 1 cut(s) 1073
HindIII AAGCTT 2 cut(s) 215, 553
HinfI GANTC 8 cut(s) 7, 50, 173, 307, 490, 991, 1273, 1406
HpaII CCGG 2 cut(s) 643, 1349
HphI GGTGA 1 cut(s) 1363
Hpy166II GTNNAC 3 cut(s) 378, 404, 1073
Hpy188I TCNGA 5 cut(s) 55, 178, 679, 1147, 1411
Hpy188III TCNNGA 8 cut(s) 39, 191, 347, 395, 461, 605, 963, 1129
Hpy8I GTNNAC 3 cut(s) 378, 404, 1073
HpyAV CCTTC 6 cut(s) 662, 815, 1180, 1305, 1348, 1355
HpyCH4III ACNGT 5 cut(s) 389, 621, 814, 915, 1178
HpyCH4IV ACGT 4 cut(s) 184, 380, 467, 1069
HpyF10VI GCNNNNNNNGC 8 cut(s) 508, 925, 985, 994, 1003, 1036, 1045, 1210
HpyF3I CTNAG 8 cut(s) 99, 474, 676, 702, 710, 1263, 1337, 1398
HpySE526I ACGT 4 cut(s) 184, 380, 467, 1069
Hsp92I GRCGYC 1 cut(s) 1069
Hsp92II CATG 7 cut(s) 350, 541, 608, 902, 1102, 1159, 1406
Ksp22I TGATCA 2 cut(s) 343, 844
Kzo9I GATC 5 cut(s) 35, 259, 343, 541, 844
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 866, 1144
Lsp1109I GCAGC 9 cut(s) 81, 750, 901, 931, 997, 1015, 1057, 1225, 1228
LweI GCATC 6 cut(s) 308, 362, 636, 972, 982, 1378
MabI ACCWGGT 1 cut(s) 104
MaeI CTAG 3 cut(s) 138, 486, 839
MaeII ACGT 4 cut(s) 184, 380, 467, 1069
MaeIII GTNAC 4 cut(s) 468, 761, 909, 1149
MalI GATC 5 cut(s) 37, 261, 345, 543, 846
MboI GATC 5 cut(s) 35, 259, 343, 541, 844
MboII GAAGA 3 cut(s) 101, 269, 1077
MfeI CAATTG 4 cut(s) 339, 687, 783, 1199
MhlI GDGCHC 2 cut(s) 406, 1345
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 8 cut(s) 187, 296, 483, 501, 542, 685, 846, 1438
Mph1103I ATGCAT 2 cut(s) 301, 975
MseI TTAA 4 cut(s) 81, 213, 534, 794
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 2 cut(s) 643, 1349
MspR9I CCNGG 5 cut(s) 106, 643, 865, 1124, 1370
MunI CAATTG 4 cut(s) 339, 687, 783, 1199
Mva1269I GAATGC 3 cut(s) 248, 909, 1065
MvaI CCWGG 4 cut(s) 106, 865, 1124, 1370
MwoI GCNNNNNNNGC 8 cut(s) 508, 925, 985, 994, 1003, 1036, 1045, 1210
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 1155
NdeI CATATG 1 cut(s) 274
NdeII GATC 5 cut(s) 35, 259, 343, 541, 844
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 7 cut(s) 350, 541, 608, 902, 1102, 1159, 1406
NlaIV GGNNCC 2 cut(s) 673, 862
NmuCI GTSAC 1 cut(s) 909
NsiI ATGCAT 2 cut(s) 301, 975
PagI TCATGA 2 cut(s) 346, 604
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 3 cut(s) 248, 909, 1065
PfeI GAWTC 7 cut(s) 7, 50, 173, 307, 991, 1273, 1406
PfoI TCCNGGA 2 cut(s) 863, 1368
PinAI ACCGGT 1 cut(s) 1348
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
Psp6I CCWGG 4 cut(s) 104, 863, 1122, 1368
PspGI CCWGG 4 cut(s) 104, 863, 1122, 1368
PspN4I GGNNCC 2 cut(s) 673, 862
PspPI GGNCC 2 cut(s) 833, 1120
PstI CTGCAG 1 cut(s) 583
RsaI GTAC 2 cut(s) 187, 1104
RsaNI GTAC 2 cut(s) 186, 1103
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 81, 213, 534, 794
Sau3AI GATC 5 cut(s) 35, 259, 343, 541, 844
Sau96I GGNCC 2 cut(s) 833, 1120
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 5 cut(s) 106, 643, 865, 1124, 1370
SduI GDGCHC 2 cut(s) 406, 1345
SexAI ACCWGGT 1 cut(s) 104
SfaNI GCATC 6 cut(s) 308, 362, 636, 972, 982, 1378
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 1120
SmlI CTYRAG 2 cut(s) 212, 503
SmoI CTYRAG 2 cut(s) 212, 503
SsiI CCGC 3 cut(s) 146, 614, 977
SspMI CTAG 3 cut(s) 138, 486, 839
StyD4I CCNGG 5 cut(s) 104, 641, 863, 1122, 1368
StyI CCWWGG 2 cut(s) 74, 1155
TaaI ACNGT 5 cut(s) 389, 621, 814, 915, 1178
TaiI ACGT 4 cut(s) 187, 383, 470, 1072
TaqI TCGA 3 cut(s) 943, 962, 1345
TaqII GACCGA 1 cut(s) 183
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 7 cut(s) 7, 50, 173, 307, 991, 1273, 1406
Tru1I TTAA 4 cut(s) 81, 213, 534, 794
Tru9I TTAA 4 cut(s) 81, 213, 534, 794
TscAI CASTG 2 cut(s) 779, 819
TseFI GTSAC 1 cut(s) 909
TseI GCWGC 9 cut(s) 94, 738, 889, 919, 985, 1003, 1045, 1213, 1216
Tsp45I GTSAC 1 cut(s) 909
TspDTI ATGAA 6 cut(s) 102, 363, 431, 887, 1383, 1428
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 2 cut(s) 779, 819
Vha464I CTTAAG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 1120
XapI RAATTY 5 cut(s) 446, 868, 894, 1221, 1311
XspI CTAG 3 cut(s) 138, 486, 839
ZraI GACGTC 1 cut(s) 1070
Zsp2I ATGCAT 2 cut(s) 301, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.