Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Reverse (-)

11860842 .. 11862167

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAGTGTCTTTGACTCGTTTTTCATGGTGCTGGTGGGGTGGGAAAGAGAAGGAGCCTGGGAATAATGGGGCTTCACTGAATTCTCCATTAGAGTGGGGTTTCGGGGGCCTGAGGGAACCTGGTACGGTTCAGTTCCCTTCGGTTAAGGGCACGAAAATGGCCTCTTCGCCTAGAAAGGTGAAGCGGAAATGGCAGAGTAGGGAGGAGAGGAGAATTGACAGGGAGTATGATGTTGTGATTGTGCCATCAGATGGTGGTGGTTGCTTGTCAGGGTCTGAATCCGATGACTCGGACTGGTCCATTGGGTGGTTGGAACCTCATGGTTCTGGTTTCCAGAGTGATGATGAGTCGGATAATAGTTTTGCAGTGCTGGTGCCTTGCTATAGCCCTGGTTGCAAGGAGGTGGTGGAAGGTTCAAACAATGAGCTTTTGAGTGCCATCAAGAACCTCCCTGATGAGTTCTCTCCTGATTGCAAGAATTATATGGAACAATGGCTGTCTTCTCTTCAAAACTTTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.41

Weight (kDa)

4.67

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	2 cut(s)	254, 309
AciI	CCGC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	254, 309
AgsI	TTSAA	2 cut(s)	420, 512
AjnI	CCWGG	3 cut(s)	58, 121, 391
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	109, 162
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	109, 300
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	300
AxyI	CCTNAGG	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	495
BccI	CCATC	3 cut(s)	248, 256, 449
BciT130I	CCWGG	3 cut(s)	60, 123, 393
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	60, 123, 393
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	109, 300
BmiI	GGNNCC	5 cut(s)	57, 110, 120, 318, 378
BmrFI	CCNGG	3 cut(s)	60, 123, 393
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	59, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 309
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	1 cut(s)	113
BseBI	CCWGG	3 cut(s)	60, 123, 393
BseDI	CCNNGG	2 cut(s)	59, 391
BseLI	CCNNNNNNNGG	2 cut(s)	254, 309
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	2 cut(s)	221, 226
BseSI	GKGCMC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	111, 164
BshNI	GGYRCC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	254, 309
BsnI	GGCC	2 cut(s)	111, 164
Bsp1286I	GDGCHC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	111, 164
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	5 cut(s)	57, 110, 120, 318, 378
BspT107I	GGYRCC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	59, 391
Bst2UI	CCWGG	3 cut(s)	60, 123, 393
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	172, 513
BstDEI	CTNAG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 396
BstNI	CCWGG	3 cut(s)	60, 123, 393
BstSCI	CCNGG	3 cut(s)	58, 121, 391
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	111, 164
BtsI	GCAGTG	2 cut(s)	12, 375
BtsIMutI	CAGTG	3 cut(s)	12, 77, 375
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	109, 300
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	27, 323
CviJI	RGCY	7 cut(s)	58, 74, 111, 164, 390, 430, 499
CviKI_1	RGCY	7 cut(s)	58, 74, 111, 164, 390, 430, 499
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	172, 513
EarI	CTCTTC	2 cut(s)	172, 513
Eco47I	GGWCC	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	58, 121, 391
FaeI	CATG	2 cut(s)	30, 326
FaiI	YATR	6 cut(s)	28, 231, 324, 387, 486, 488
FatI	CATG	2 cut(s)	26, 322
FspBI	CTAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	111, 164
Hin1II	CATG	2 cut(s)	30, 326
HinfI	GANTC	4 cut(s)	16, 281, 290, 350
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	253, 280, 286, 295, 355
Hpy188III	TCNNGA	3 cut(s)	337, 445, 470
HpyAV	CCTTC	3 cut(s)	46, 150, 407
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	368, 399, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 396
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	30, 326
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	1 cut(s)	511
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	1 cut(s)	174
MboII	GAAGA	3 cut(s)	159, 495, 500
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	3 cut(s)	82, 216, 481
MlyI	GAGTC	3 cut(s)	10, 284, 359
MmeI	TCCRAC	2 cut(s)	294, 333
MnlI	CCTC	7 cut(s)	108, 175, 199, 204, 330, 397, 461
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	94, 158
MspR9I	CCNGG	3 cut(s)	60, 123, 393
MvaI	CCWGG	3 cut(s)	60, 123, 393
MwoI	GCNNNNNNNGC	2 cut(s)	193, 396
NlaIII	CATG	2 cut(s)	30, 326
NlaIV	GGNNCC	5 cut(s)	57, 110, 120, 318, 378
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	2 cut(s)	254, 309
PleI	GAGTC	3 cut(s)	10, 284, 358
PpsI	GAGTC	3 cut(s)	10, 284, 358
Psp6I	CCWGG	3 cut(s)	58, 121, 391
PspGI	CCWGG	3 cut(s)	58, 121, 391
PspN4I	GGNNCC	5 cut(s)	57, 110, 120, 318, 378
PspPI	GGNCC	2 cut(s)	109, 300
PstNI	CAGNNNCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	2 cut(s)	94, 158
SaqAI	TTAA	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	109, 300
SchI	GAGTC	3 cut(s)	10, 284, 359
ScrFI	CCNGG	3 cut(s)	60, 123, 393
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	7 cut(s)	124, 183, 322, 408, 418, 432, 453
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	94, 158
Sse9I	AATT	3 cut(s)	82, 216, 481
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	58, 121, 391
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	3 cut(s)	82, 216, 481
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	12, 84, 375
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	3 cut(s)	12, 84, 375
Van91I	CCANNNNNTGG	2 cut(s)	254, 309
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.