Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

20954859 .. 20957751

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAGTCTCTTTCACTCGTTTTTCATGGTGTTGGTGGGGTGGGAAAGAGAAAGAGCCTGCTAATAATGGGTCTTCTCTAAATTCTTCTTTTGAGTGTGGTTTTGGTGGTCTGAGGGAACCTGGAACTGTCCAATTCCCTTCAGTTATGGGCACGAAAATGGCCTCGTCTCCGAGAAAGGTTAAGAGGAAGTGGCAGAGTAGAGAAGAGAGGAGGATTGATAGGGAGTATGATGTTGTTATTGTGCCATCGGATGGTGGAGGCTGTTTGTCAGGGTCTGAATCCGATGACTCGGACTGGTCCATAGGATGGTTGGAGCCTCATGGCCCTGGTTTCCAGAGTGATGATAAATCGGATAATAGTTTTGCAGTGCTGGTCCCTTGCTACAGCCCTGGTTGCAAGGAGGTGGTGGAGGGTTCTAATAATGAGCTTTTGAGTGCCATCAAGAACCTCCCAGATGACTTCTCTTCTGATTGCAAGAACTATATGGAACAGTGGCTTTCTTCTCTTCAGAACTTTGACGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

4.71

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	254, 309
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	126, 494
AcyI	GRCGYC	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	254, 309
AjnI	CCWGG	3 cut(s)	121, 328, 391
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	13, 174
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	162, 325
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	300, 326, 376
AvaII	GGWCC	2 cut(s)	300, 376
BaeGI	GKGCMC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	66
BccI	CCATC	4 cut(s)	248, 256, 303, 449
BciT130I	CCWGG	3 cut(s)	123, 330, 393
BcoDI	GTCTC	2 cut(s)	13, 174
BfmI	CTRYAG	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	123, 330, 393
Bme18I	GGWCC	2 cut(s)	300, 376
BmgT120I	GGNCC	3 cut(s)	300, 326, 376
BmiI	GGNNCC	3 cut(s)	120, 318, 378
BmrFI	CCNGG	3 cut(s)	123, 330, 393
BpiI	GAAGAC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	328, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 309
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	3 cut(s)	123, 330, 393
BseDI	CCNNGG	2 cut(s)	328, 391
BseGI	GGATG	2 cut(s)	259, 314
BseLI	CCNNNNNNNGG	2 cut(s)	254, 309
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	164, 327
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	254, 309
BsmAI	GTCTC	2 cut(s)	13, 174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	164, 327
Bsp1286I	GDGCHC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	164, 327
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	120, 318, 378
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	328, 391
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	3 cut(s)	123, 330, 393
Bst4CI	ACNGT	2 cut(s)	130, 495
Bst6I	CTCTTC	3 cut(s)	201, 472, 513
BstACI	GRCGYC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	259, 314
BstMAI	GTCTC	2 cut(s)	13, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	3 cut(s)	123, 330, 393
BstSCI	CCNGG	3 cut(s)	121, 328, 391
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	164, 327
BtsCI	GGATG	2 cut(s)	259, 314
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 500
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	300, 326, 376
CviAII	CATG	2 cut(s)	27, 323
CviJI	RGCY	8 cut(s)	58, 164, 264, 319, 327, 390, 430, 499
CviKI_1	RGCY	8 cut(s)	58, 164, 264, 319, 327, 390, 430, 499
DdeI	CTNAG	1 cut(s)	113
Eam1104I	CTCTTC	3 cut(s)	201, 472, 513
EarI	CTCTTC	3 cut(s)	201, 472, 513
Eco47I	GGWCC	2 cut(s)	300, 376
Eco57I	CTGAAG	2 cut(s)	126, 494
EcoRII	CCWGG	3 cut(s)	121, 328, 391
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	30, 326
FaiI	YATR	7 cut(s)	28, 149, 231, 305, 324, 486, 488
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	26, 322
FokI	GGATG	2 cut(s)	266, 321
HaeIII	GGCC	2 cut(s)	164, 327
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	2 cut(s)	30, 326
HinfI	GANTC	2 cut(s)	281, 290
Hpy188I	TCNGA	9 cut(s)	114, 174, 253, 280, 286, 295, 355, 472, 513
Hpy188III	TCNNGA	2 cut(s)	337, 445
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	130, 495
HpyCH4V	TGCA	3 cut(s)	368, 399, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	30, 326
LmnI	GCTCC	1 cut(s)	316
MboII	GAAGA	6 cut(s)	66, 78, 218, 459, 495, 500
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	82, 134
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	294
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	123, 330, 393
MvaI	CCWGG	3 cut(s)	123, 330, 393
MwoI	GCNNNNNNNGC	1 cut(s)	396
NlaIII	CATG	2 cut(s)	30, 326
NlaIV	GGNNCC	3 cut(s)	120, 318, 378
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	2 cut(s)	254, 309
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	121, 328, 391
PspGI	CCWGG	3 cut(s)	121, 328, 391
PspN4I	GGNNCC	3 cut(s)	120, 318, 378
PspPI	GGNCC	3 cut(s)	300, 326, 376
PstNI	CAGNNNCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	183
Sau96I	GGNCC	3 cut(s)	300, 326, 376
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	123, 330, 393
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	5 cut(s)	124, 183, 408, 432, 453
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	2 cut(s)	300, 376
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	82, 134
StyD4I	CCNGG	3 cut(s)	121, 328, 391
TaaI	ACNGT	2 cut(s)	130, 495
TasI	AATT	2 cut(s)	82, 134
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	375, 500
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	2 cut(s)	375, 500
Van91I	CCANNNNNTGG	2 cut(s)	254, 309
VpaK11BI	GGWCC	2 cut(s)	300, 376
XapI	RAATTY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.