Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

34354592 .. 34355149

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTGCGCAAACGGGGCTTTTACCCAGCTTTCACCCAGCTTTCATGGTGGTTGTGGAGTGGAAAGCAAAAAGAGCCTAGAATCCCAAAGGGGTCCTCTTTAAATTCTTCCCCTGACTCGGGCATGCGGGAAACTGATGCGTTAAAGTTTCCTTCGGTGAAGGGGTCAAATATGGCCTCATCATCGTCGAGAAGGGTGAAACGCAAATGGCATAGTCGGGAAGAACGGAAAATTGATAAGGAATATGATGTCGTTCTTGTGCCATCCGAGGGTGGATGTGTTTCCGGTTCTGAGTCCGAGGCCTCGGATTGGGCAGTTGGATGGTTCGAGCCTGTTGGACCTGGGTTACAGAGAGATGACGATGCAGACGATAGTTTTGCCGTGCTGGTTCCATGCTATGGGCATGTTATTCATGATATGGTGAAGGATTCCAAGAACAATATCTTGAGCACAGTTGGGAACATCCCAGATGGTTATTCAGATGGTAAGAGCTTATGTCTTATACGCCTATTTATCTCTTTGCTTTCATTTCATGTGTCCTGCTCATATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.57

Weight (kDa)

6.9

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	398
AciI	CCGC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	103
AfiI	CCNNNNNNNGG	5 cut(s)	118, 119, 269, 309, 398
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	29, 40, 492
AluI	AGCT	3 cut(s)	29, 40, 492
Alw21I	GWGCWC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	174, 300
ApoI	RAATTY	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	93, 338
AsuHPI	GGTGA	4 cut(s)	25, 169, 208, 433
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	93, 338
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	5 cut(s)	271, 315, 464, 476, 545
BceAI	ACGGC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	93, 338
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	93, 338
BmiI	GGNNCC	2 cut(s)	94, 390
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	2 cut(s)	127, 352
BpuEI	CTTGAG	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	267, 297, 303, 341
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 119, 269, 309, 398
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	4 cut(s)	267, 297, 303, 341
BseGI	GGATG	4 cut(s)	263, 281, 326, 462
BseLI	CCNNNNNNNGG	5 cut(s)	118, 119, 269, 309, 398
BseMII	CTCAG	1 cut(s)	282
BseYI	CCCAGC	2 cut(s)	25, 36
BshFI	GGCC	2 cut(s)	176, 302
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	5 cut(s)	118, 119, 269, 309, 398
BsnI	GGCC	2 cut(s)	176, 302
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	452
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	176, 302
BspCNI	CTCAG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	94, 390
BssECI	CCNNGG	4 cut(s)	267, 297, 303, 341
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	263, 281, 326, 462
BstHHI	GCGC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 73
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	2 cut(s)	127, 407
BstSCI	CCNGG	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	176, 302
BtsCI	GGATG	4 cut(s)	263, 281, 326, 462
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	93, 338
CviAII	CATG	6 cut(s)	45, 124, 393, 404, 413, 533
CviJI	RGCY	8 cut(s)	18, 29, 40, 76, 176, 302, 331, 492
CviKI_1	RGCY	8 cut(s)	18, 29, 40, 76, 176, 302, 331, 492
DdeI	CTNAG	1 cut(s)	291
DraI	TTTAAA	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	93, 338
Eco88I	CYCGRG	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	340
FaeI	CATG	6 cut(s)	48, 127, 396, 407, 416, 536
FatI	CATG	6 cut(s)	44, 123, 392, 403, 412, 532
FauI	CCCGC	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	547
FokI	GGATG	4 cut(s)	250, 288, 333, 449
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GsaI	CCCAGC	2 cut(s)	29, 40
HaeIII	GGCC	2 cut(s)	176, 302
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	6 cut(s)	48, 127, 396, 407, 416, 536
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	81, 116, 293, 428
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	4 cut(s)	25, 169, 208, 433
Hpy188I	TCNGA	5 cut(s)	268, 292, 298, 307, 481
Hpy188III	TCNNGA	4 cut(s)	189, 218, 413, 445
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	154, 162, 186, 418
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 73
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	6 cut(s)	48, 127, 396, 407, 416, 536
HspAI	GCGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	127, 352
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	345
MboII	GAAGA	2 cut(s)	99, 233
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	2 cut(s)	103, 231
MlyI	GAGTC	2 cut(s)	110, 302
MmeI	TCCRAC	2 cut(s)	298, 316
MnlI	CCTC	5 cut(s)	106, 187, 262, 292, 313
MseI	TTAA	2 cut(s)	101, 143
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	15, 73
NdeI	CATATG	1 cut(s)	547
NlaIII	CATG	6 cut(s)	48, 127, 396, 407, 416, 536
NlaIV	GGNNCC	2 cut(s)	94, 390
NsbI	TGCGCA	1 cut(s)	8
NspI	RCATGY	2 cut(s)	127, 407
PaeI	GCATGC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	81, 428
PflMI	CCANNNNNTGG	1 cut(s)	398
PleI	GAGTC	2 cut(s)	110, 301
PpsI	GAGTC	2 cut(s)	110, 301
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	2 cut(s)	25, 36
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	94, 390
PspPI	GGNCC	2 cut(s)	93, 338
PspPPI	RGGWCCY	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	101, 143
Sau96I	GGNCC	2 cut(s)	93, 338
SchI	GAGTC	2 cut(s)	110, 302
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	452
SetI	ASST	4 cut(s)	31, 42, 343, 494
SfaNI	GCATC	2 cut(s)	127, 352
SinI	GGWCC	2 cut(s)	93, 338
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	103, 231
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	188, 327
TasI	AATT	2 cut(s)	103, 231
TfiI	GAWTC	2 cut(s)	81, 428
Tru1I	TTAA	2 cut(s)	101, 143
Tru9I	TTAA	2 cut(s)	101, 143
TspDTI	ATGAA	4 cut(s)	33, 401, 516, 521
TspGWI	ACGGA	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	93, 338
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	2 cut(s)	127, 407
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.