Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

13521023 .. 13523955

Gene Structure 2933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1039500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCAGTCTCTTTCACACGTCTGTCATGGTGTTGGTGGGGTGGGAAGGAGAAGGAGCCTGCTAACAGTGGCTCCTCAATGAATTCTTCTTTTGAGTGTGGTTTTGGTGGTCTGAGGGAACCGGGGGCGGTTCAATTCTCTTCGGTTAAGGGCCCAAAAATGGCCTCGTCTCCGAGGAAGGTTAAGAGGAAATGGCAGAGTAGGGAAGAGAGGAGGGTTGATAGGGAGTATGATATTGTTATTGTGCCATCAGATGGTGGTGGGTTTTTGTCAGGGTCCGAATCCGACGATTCGGACTGGTCTATTGGGTGGTTGGAGCCTCATGGCTCTGGCTTCCAGAGTGACGATGACGAATCGGATAATAGCTTTGCAGTGCTGGTCCCTTGCTATACCCCTGGCTGCAAGGAGGTGGTGGATGATTCTAACAAGGAGCTCTTGAGTGCCATCAAGAACCTCCCTGATGAATTCTCATCTGATTGCAAGAACTATATGGAACAGTGGCTTTCTTCTCTTCAGAACTTCGACGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.55

Weight (kDa)

4.61

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	82, 464
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	525
AfiI	CCNNNNNNNGG	2 cut(s)	160, 254
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	134
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	366, 433
AluI	AGCT	2 cut(s)	366, 433
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	2 cut(s)	13, 174
AoxI	GGCC	2 cut(s)	151, 162
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	399
ApoI	RAATTY	2 cut(s)	82, 464
AspS9I	GGNCC	4 cut(s)	151, 152, 276, 379
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	2 cut(s)	276, 379
BaeGI	GKGCMC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	155, 435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	3 cut(s)	248, 256, 452
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	13, 174
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	123, 396
Bme18I	GGWCC	2 cut(s)	276, 379
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	4 cut(s)	151, 152, 276, 379
BmiI	GGNNCC	7 cut(s)	57, 73, 120, 153, 277, 318, 381
BmrFI	CCNGG	2 cut(s)	123, 396
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	122, 173, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 254
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	122, 173, 394
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	160, 254
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	2 cut(s)	64, 226
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	386
BshFI	GGCC	2 cut(s)	153, 164
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	160, 254
BsmAI	GTCTC	2 cut(s)	13, 174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	153, 164
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	155, 435
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	153, 164
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	7 cut(s)	57, 73, 120, 153, 277, 318, 381
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	122, 173, 394
BssNI	GRCGYC	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	68, 498
Bst6I	CTCTTC	3 cut(s)	145, 201, 516
BstACI	GRCGYC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	421
BstMAI	GTCTC	2 cut(s)	13, 174
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	121, 394
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	153, 164
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	73, 378, 503
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	4 cut(s)	151, 152, 276, 379
CviAII	CATG	2 cut(s)	27, 323
DdeI	CTNAG	1 cut(s)	113
Eam1104I	CTCTTC	3 cut(s)	145, 201, 516
EarI	CTCTTC	3 cut(s)	145, 201, 516
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	2 cut(s)	155, 435
Eco47I	GGWCC	2 cut(s)	276, 379
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	2 cut(s)	82, 464
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	2 cut(s)	155, 435
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	30, 326
FaiI	YATR	6 cut(s)	28, 231, 324, 390, 489, 491
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	26, 322
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	2 cut(s)	155, 435
Fsp4HI	GCNGC	1 cut(s)	400
GluI	GCNGC	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	153, 164
HapII	CCGG	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	30, 326
HinfI	GANTC	4 cut(s)	281, 290, 353, 419
HpaII	CCGG	1 cut(s)	122
Hpy188I	TCNGA	9 cut(s)	114, 174, 253, 280, 286, 295, 358, 475, 516
Hpy188III	TCNNGA	3 cut(s)	337, 436, 448
Hpy99I	CGWCG	2 cut(s)	290, 527
HpyAV	CCTTC	3 cut(s)	40, 46, 172
HpyCH4III	ACNGT	2 cut(s)	68, 498
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	371, 402, 480
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	2 cut(s)	30, 326
LmnI	GCTCC	4 cut(s)	55, 77, 316, 430
Lsp1109I	GCAGC	1 cut(s)	386
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	341
MboII	GAAGA	5 cut(s)	78, 132, 218, 498, 503
MhlI	GDGCHC	2 cut(s)	155, 435
MluCI	AATT	3 cut(s)	82, 134, 464
MmeI	TCCRAC	2 cut(s)	294, 309
MseI	TTAA	2 cut(s)	147, 183
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	123, 396
MvaI	CCWGG	1 cut(s)	396
NciI	CCSGG	1 cut(s)	123
NlaIII	CATG	2 cut(s)	30, 326
NlaIV	GGNNCC	7 cut(s)	57, 73, 120, 153, 277, 318, 381
NmuCI	GTSAC	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	281, 290, 353, 419
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	7 cut(s)	57, 73, 120, 153, 277, 318, 381
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	4 cut(s)	151, 152, 276, 379
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	147, 183
SatI	GCNGC	1 cut(s)	400
Sau96I	GGNCC	4 cut(s)	151, 152, 276, 379
ScrFI	CCNGG	2 cut(s)	123, 396
SduI	GDGCHC	2 cut(s)	155, 435
SetI	ASST	6 cut(s)	22, 183, 368, 411, 435, 456
SinI	GGWCC	2 cut(s)	276, 379
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	3 cut(s)	82, 134, 464
SsiI	CCGC	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	121, 394
TaaI	ACNGT	2 cut(s)	68, 498
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	522
TasI	AATT	3 cut(s)	82, 134, 464
TfiI	GAWTC	4 cut(s)	281, 290, 353, 419
Tru1I	TTAA	2 cut(s)	147, 183
Tru9I	TTAA	2 cut(s)	147, 183
TscAI	CASTG	3 cut(s)	73, 378, 503
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	95, 477
TspRI	CASTG	3 cut(s)	73, 378, 503
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	276, 379
XapI	RAATTY	2 cut(s)	82, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.