Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

62187791 .. 62188525

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTTGGCTTTTACCAATCTTTCGTGGTGGTTGTGGAGTGGAAAGCAGAAGGAGCCTCGAATCTCTAATGGAACCTGTTTAAATTCTTCCCCTGAATCGGGTTTGCGGGAATTTGATGCATTAAAGTTTCCTTCTGTTAAAGGGGCCAATATGGCTGCATCTAGAAAGGTGAAGCGGAAATGGCATAGTCGGGAAGAAAGGAAAATTGATAGGGAATATGATGGTGTTCTCGTTCCATCTGATGGAGAGTGTCTTTCTGGTTCTGAATCTGATGACTCGGATTGGTCAATTGGATGGTTGGAGCCTCCTGGACCTGGGTTCCAGAGTGAAGATGATGCAGCGATAGTTTCGCTGTGCTGGTTCCATGCTATGGGCATGCTATTCATGATATGGTGGGGAAATCAAAGAACAAAGATCAGAATACTATTGGGAGCATCCCAGATGGTTATTCAGATGGCTTTTGGTTATGTTAATTTGATTTTAGTCATTTTACAATACCTCTACTGTCAATTGTGGCAAGACCCTGAGGGCTCTTTCTCATACGTCAGTCATTACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.36

Weight (kDa)

5.8

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	245, 373
AciI	CCGC	2 cut(s)	109, 178
AcsI	RAATTY	2 cut(s)	85, 113
AfiI	CCNNNNNNNGG	5 cut(s)	100, 101, 245, 317, 373
AjnI	CCWGG	2 cut(s)	310, 316
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	158, 341
ApoI	RAATTY	2 cut(s)	85, 113
AspS9I	GGNCC	2 cut(s)	147, 314
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	536
BbvI	GCAGC	2 cut(s)	145, 353
BccI	CCATC	6 cut(s)	218, 239, 247, 291, 439, 451
BciT130I	CCWGG	2 cut(s)	312, 318
BfaI	CTAG	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	159, 342
BlsI	GCNGC	2 cut(s)	160, 343
Bme1390I	CCNGG	2 cut(s)	312, 318
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	147, 314
BmiI	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 365
BmrFI	CCNGG	2 cut(s)	312, 318
BmsI	GCATC	4 cut(s)	109, 170, 328, 446
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 101, 245, 317, 373
Bse21I	CCTNAGG	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	312, 318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	302, 437
BseLI	CCNNNNNNNGG	5 cut(s)	100, 101, 245, 317, 373
BseMII	CTCAG	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	145, 353
BshFI	GGCC	1 cut(s)	149
BslI	CCNNNNNNNGG	5 cut(s)	100, 101, 245, 317, 373
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	109, 178
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	520
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 365
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	312, 318
Bst4CI	ACNGT	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	302, 437
BstKTI	GATC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 155, 184
BstNI	CCWGG	2 cut(s)	312, 318
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	310, 316
BstV1I	GCAGC	2 cut(s)	145, 353
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	302, 437
Cac8I	GCNNGC	1 cut(s)	380
CciI	TCATGA	1 cut(s)	387
Cfr13I	GGNCC	2 cut(s)	147, 314
CviAII	CATG	3 cut(s)	368, 379, 388
CviJI	RGCY	8 cut(s)	5, 11, 58, 149, 158, 307, 461, 534
CviKI_1	RGCY	8 cut(s)	5, 11, 58, 149, 158, 307, 461, 534
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
DraI	TTTAAA	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	528
EcoRII	CCWGG	2 cut(s)	310, 316
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	536
FaeI	CATG	3 cut(s)	371, 382, 391
FatI	CATG	3 cut(s)	367, 378, 387
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	159, 342
FokI	GGATG	2 cut(s)	309, 424
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	159, 342
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	2 cut(s)	159, 342
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	371, 382, 391
HinfI	GANTC	4 cut(s)	63, 98, 269, 278
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	6 cut(s)	244, 268, 274, 283, 422, 456
Hpy188III	TCNNGA	4 cut(s)	165, 194, 325, 388
HpyAV	CCTTC	2 cut(s)	46, 144
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	3 cut(s)	122, 161, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 155, 184
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	371, 382, 391
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	3 cut(s)	55, 304, 434
Lsp1109I	GCAGC	2 cut(s)	145, 353
LweI	GCATC	4 cut(s)	109, 170, 328, 446
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	546
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	3 cut(s)	81, 209, 344
MfeI	CAATTG	2 cut(s)	291, 512
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	6 cut(s)	85, 113, 207, 291, 475, 512
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	69, 318, 512, 523
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	5 cut(s)	83, 125, 141, 474, 562
MspR9I	CCNGG	2 cut(s)	312, 318
MunI	CAATTG	2 cut(s)	291, 512
MvaI	CCWGG	2 cut(s)	312, 318
MwoI	GCNNNNNNNGC	3 cut(s)	55, 155, 184
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	3 cut(s)	371, 382, 391
NlaIV	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 365
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	382
PagI	TCATGA	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	63, 98, 269
PflMI	CCANNNNNTGG	2 cut(s)	245, 373
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	160, 343
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	310, 316
PspGI	CCWGG	2 cut(s)	310, 316
PspN4I	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 365
PspPI	GGNCC	2 cut(s)	147, 314
SaqAI	TTAA	5 cut(s)	83, 125, 141, 474, 562
SatI	GCNGC	2 cut(s)	159, 342
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	2 cut(s)	147, 314
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	312, 318
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	5 cut(s)	80, 174, 319, 504, 549
SfaNI	GCATC	4 cut(s)	109, 170, 328, 446
SinI	GGWCC	1 cut(s)	314
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	6 cut(s)	85, 113, 207, 291, 475, 512
SsiI	CCGC	2 cut(s)	109, 178
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	310, 316
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	61
TasI	AATT	6 cut(s)	85, 113, 207, 291, 475, 512
TfiI	GAWTC	3 cut(s)	63, 98, 269
Tru1I	TTAA	5 cut(s)	83, 125, 141, 474, 562
Tru9I	TTAA	5 cut(s)	83, 125, 141, 474, 562
TseI	GCWGC	2 cut(s)	158, 341
TspDTI	ATGAA	1 cut(s)	376
Van91I	CCANNNNNTGG	2 cut(s)	245, 373
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	85, 113
XbaI	TCTAGA	1 cut(s)	164
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.