Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Reverse (-)

23021789 .. 23025640

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAGTGTCTTTCACTCGTTTTTCGTGGTGCTGGTGGGGTGGGAAAGAGAAAGAGCCTGCTAATAATGGGTCTTCAGTGAATTCTCCGTTAGAGTGGGGTTTTGGGGGCCTGAGGGAACCTGGAACGGTTCAGTTCCCTTCGGTTAAGGGGACGAAAATGGCCTCTTCGCCTAGAAAGGTGAAGCGGAAATGGCAGAGTAGGGAGGAGAGGAGGATTGATAGGGAGTATGATGTTGTAATTGTGCCATCAGATGGTGGTGGCTGCTTGTCAGGGTCTGAATCCGATGACTCAGACTGGTCCATTGGGTGGTTGGAACCTCATGGTTCTGGTTTCCAGAGTGTTGATGAGTCGGATAATAGTTTTGCTGTGCTGGTGCCTTGCTATAGCCCTGGTTGCAAGGAGGTGGTGGAAGATTCAAACAATGAGCTTTTGAGTGCCATCAAGAACCTCCCTGAGGAGTTCTCTCCTGATTGCAAGAATTATATGGAACAATGGCTGTCTTCTCTTCAAAACTTTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.51

Weight (kDa)

4.68

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	2 cut(s)	254, 309
AciI	CCGC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	3 cut(s)	254, 309, 457
AgsI	TTSAA	2 cut(s)	420, 512
AjnI	CCWGG	2 cut(s)	121, 391
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	109, 162
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	109, 300
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	300
AxyI	CCTNAGG	2 cut(s)	113, 456
BanI	GGYRCC	1 cut(s)	376
BbsI	GAAGAC	2 cut(s)	66, 495
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	3 cut(s)	248, 256, 449
BciT130I	CCWGG	2 cut(s)	123, 393
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	123, 393
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	109, 300
BmiI	GGNNCC	4 cut(s)	110, 120, 318, 378
BmrFI	CCNGG	2 cut(s)	123, 393
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	2 cut(s)	66, 495
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 309, 457
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	2 cut(s)	113, 456
BseBI	CCWGG	2 cut(s)	123, 393
BseDI	CCNNGG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	254, 309, 457
BseMII	CTCAG	3 cut(s)	104, 306, 447
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	221, 226, 473
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	111, 164
BshNI	GGYRCC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	3 cut(s)	254, 309, 457
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	111, 164
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	111, 164
BspCNI	CTCAG	3 cut(s)	105, 305, 448
BspLI	GGNNCC	4 cut(s)	110, 120, 318, 378
BspT107I	GGYRCC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	123, 393
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	172, 513
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	113, 292, 456
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 396
BstNI	CCWGG	2 cut(s)	123, 393
BstSCI	CCNGG	2 cut(s)	121, 391
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	2 cut(s)	66, 495
Bsu36I	CCTNAGG	2 cut(s)	113, 456
BsuRI	GGCC	2 cut(s)	111, 164
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 84
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	109, 300
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	7 cut(s)	58, 111, 164, 264, 390, 430, 499
CviKI_1	RGCY	7 cut(s)	58, 111, 164, 264, 390, 430, 499
DdeI	CTNAG	3 cut(s)	113, 292, 456
Eam1104I	CTCTTC	2 cut(s)	172, 513
EarI	CTCTTC	2 cut(s)	172, 513
Eco47I	GGWCC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	60
Eco81I	CCTNAGG	2 cut(s)	113, 456
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	121, 391
FaeI	CATG	1 cut(s)	326
FaiI	YATR	5 cut(s)	231, 324, 387, 486, 488
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	111, 164
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	4 cut(s)	281, 290, 350, 416
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	253, 280, 286, 295, 355
Hpy188III	TCNNGA	3 cut(s)	337, 445, 470
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	399, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 396
HpyF3I	CTNAG	3 cut(s)	113, 292, 456
Hsp92II	CATG	1 cut(s)	326
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	1 cut(s)	174
MboII	GAAGA	5 cut(s)	66, 159, 425, 495, 500
MluCI	AATT	3 cut(s)	82, 240, 481
MlyI	GAGTC	2 cut(s)	284, 359
MmeI	TCCRAC	2 cut(s)	294, 333
MnlI	CCTC	9 cut(s)	108, 175, 199, 204, 207, 330, 397, 451, 461
MseI	TTAA	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	123, 393
MvaI	CCWGG	2 cut(s)	123, 393
MwoI	GCNNNNNNNGC	2 cut(s)	193, 396
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	4 cut(s)	110, 120, 318, 378
PfeI	GAWTC	2 cut(s)	281, 416
PflMI	CCANNNNNTGG	2 cut(s)	254, 309
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	2 cut(s)	284, 358
PpsI	GAGTC	2 cut(s)	284, 358
Psp6I	CCWGG	2 cut(s)	121, 391
PspGI	CCWGG	2 cut(s)	121, 391
PspN4I	GGNNCC	4 cut(s)	110, 120, 318, 378
PspPI	GGNCC	2 cut(s)	109, 300
PstNI	CAGNNNCTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	109, 300
SchI	GAGTC	2 cut(s)	284, 359
ScrFI	CCNGG	2 cut(s)	123, 393
SetI	ASST	6 cut(s)	124, 183, 322, 408, 432, 453
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	300
Sse9I	AATT	3 cut(s)	82, 240, 481
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	121, 391
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	3 cut(s)	82, 240, 481
TfiI	GAWTC	2 cut(s)	281, 416
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	12, 84
TseI	GCWGC	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	12, 84
Van91I	CCANNNNNTGG	2 cut(s)	254, 309
VpaK11BI	GGWCC	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.