Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

47651365 .. 47654491

Gene Structure 3127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1385500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCATTTCCTGTTTCAGATTTTTCTGCATATGTTATGAATGCTGAAACGTTTCCACTTCCACTTATTGGGCTGGGTATACTTAACGCAACTGGAAGGAGATCTTTCTGTAGAATGCTTTCATGGTGGTTGTGGAGTGGAAAGCAAAAAGAGCCTAGAATCCCAAAGGGGTCCTCTTTAAATTCTTCCCCTGACTCGGGCATGCGGGAAACTGATGCGTTAAAGTTTCCTTCGGTGAAGGGGTCAAATATGGCCTCATCATCGTCGAGAAGGGTGAAACGCAGATGGCATAGTCGGGAAGAACGGAAAATTGATAGGGAATATGATGTCGTTCTTGTGCCATCTGAGGGTGGATGTGTTTCTGGTTCTGAGTCCGTGGACTCGGATTGGTCAGTTGGATGGTTGGAGCCTCTTGGACCTGGGTTCCAGAGTGATGACGATGCAGACGATAGTTTTGCCGTGCTGGTTCCATGCTATGGGCATGTTATTCATGATATGGTGAAGGATTCCAATAACAATATCTTGAGCACAGTTGGGAACATCCCAGATGGTTATTCAGATGAGAGCACAAAATATATGGAGGAGTGGCTCTCTTCTCTGAGGAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.61

Weight (kDa)

5.12

Isoelectric Point (pI)

70.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	68, 476
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	1 cut(s)	205
AclI	AACGTT	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	181
AfiI	CCNNNNNNNGG	5 cut(s)	68, 196, 197, 347, 476
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	1 cut(s)	609
AluI	AGCT	1 cut(s)	609
Alw21I	GWGCWC	2 cut(s)	530, 569
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
Asp700I	GAANNNNTTC	2 cut(s)	51, 118
AspS9I	GGNCC	2 cut(s)	171, 416
AsuHPI	GGTGA	3 cut(s)	247, 286, 511
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	171, 416
Bbv12I	GWGCWC	2 cut(s)	530, 569
BccI	CCATC	4 cut(s)	279, 349, 393, 542
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	420
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	2 cut(s)	171, 416
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	171, 416
BmiI	GGNNCC	4 cut(s)	172, 408, 425, 468
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	205, 430
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
BpuEI	CTTGAG	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	375, 419
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 196, 197, 347, 476
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	375, 419
BseGI	GGATG	3 cut(s)	359, 404, 540
BseLI	CCNNNNNNNGG	5 cut(s)	68, 196, 197, 347, 476
BseMII	CTCAG	3 cut(s)	336, 360, 590
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	596
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	530, 569
BsiHKCI	CYCGRG	1 cut(s)	196
BslI	CCNNNNNNNGG	5 cut(s)	68, 196, 197, 347, 476
BsmI	GAATGC	2 cut(s)	46, 120
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	530, 569
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	337, 361, 591
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	4 cut(s)	172, 408, 425, 468
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	375, 419
BssMI	GATC	1 cut(s)	101
BssNAI	GTATAC	1 cut(s)	80
Bst1107I	GTATAC	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	345, 369, 599
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	359, 404, 540
BstKTI	GATC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	2 cut(s)	205, 485
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BstZ17I	GTATAC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	359, 404, 540
Cac8I	GCNNGC	1 cut(s)	203
CciI	TCATGA	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	171, 416
CviAII	CATG	5 cut(s)	123, 202, 471, 482, 491
CviJI	RGCY	6 cut(s)	73, 154, 254, 409, 589, 609
CviKI_1	RGCY	6 cut(s)	73, 154, 254, 409, 589, 609
DdeI	CTNAG	3 cut(s)	345, 369, 599
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DraI	TTTAAA	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	171, 416
Eco88I	CYCGRG	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	418
FaeI	CATG	5 cut(s)	126, 205, 474, 485, 494
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	5 cut(s)	122, 201, 470, 481, 490
FauI	CCCGC	1 cut(s)	198
FauNDI	CATATG	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	79
FokI	GGATG	3 cut(s)	366, 411, 527
FspBI	CTAG	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	254
Hin1II	CATG	5 cut(s)	126, 205, 474, 485, 494
HinfI	GANTC	5 cut(s)	159, 194, 371, 380, 506
HphI	GGTGA	3 cut(s)	247, 286, 511
Hpy166II	GTNNAC	2 cut(s)	80, 379
Hpy188I	TCNGA	6 cut(s)	19, 346, 370, 385, 559, 600
Hpy188III	TCNNGA	5 cut(s)	267, 296, 427, 491, 523
Hpy8I	GTNNAC	2 cut(s)	80, 379
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	5 cut(s)	90, 232, 240, 264, 496
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	29, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	345, 369, 599
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	126, 205, 474, 485, 494
Kzo9I	GATC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	406
LweI	GCATC	2 cut(s)	205, 430
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	50
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	3 cut(s)	177, 311, 585
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	530, 569
MluCI	AATT	2 cut(s)	181, 309
MlyI	GAGTC	3 cut(s)	188, 374, 380
MmeI	TCCRAC	2 cut(s)	376, 384
MnlI	CCTC	6 cut(s)	184, 265, 340, 420, 574, 594
MroXI	GAANNNNTTC	2 cut(s)	51, 118
MseI	TTAA	3 cut(s)	84, 179, 221
MspA1I	CMGCKG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	420
Mva1269I	GAATGC	2 cut(s)	46, 120
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	126, 205, 474, 485, 494
NlaIV	GGNNCC	4 cut(s)	172, 408, 425, 468
NspI	RCATGY	2 cut(s)	205, 485
PaeI	GCATGC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PctI	GAATGC	2 cut(s)	46, 120
PdmI	GAANNNNTTC	2 cut(s)	51, 118
PfeI	GAWTC	2 cut(s)	159, 506
PflMI	CCANNNNNTGG	2 cut(s)	68, 476
PleI	GAGTC	3 cut(s)	188, 374, 379
PpsI	GAGTC	3 cut(s)	188, 374, 379
PpuMI	RGGWCCY	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	4 cut(s)	172, 408, 425, 468
PspPI	GGNCC	2 cut(s)	171, 416
PspPPI	RGGWCCY	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	84, 179, 221
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	2 cut(s)	171, 416
SchI	GAGTC	3 cut(s)	188, 374, 380
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	530, 569
SetI	ASST	3 cut(s)	53, 421, 611
SfaNI	GCATC	2 cut(s)	205, 430
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	2 cut(s)	171, 416
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	181, 309
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	181, 309
TfiI	GAWTC	2 cut(s)	159, 506
Tru1I	TTAA	3 cut(s)	84, 179, 221
Tru9I	TTAA	3 cut(s)	84, 179, 221
TspDTI	ATGAA	3 cut(s)	53, 111, 479
TspGWI	ACGGA	2 cut(s)	319, 364
Van91I	CCANNNNNTGG	2 cut(s)	68, 476
VpaK11BI	GGWCC	2 cut(s)	171, 416
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	205, 485
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	2 cut(s)	51, 118
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.