Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Reverse (-)

22492791 .. 22494705

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGTGTCTTTCACTCGTTTTTCGTGGTGCTGGTGGGGTGGGAAAGAGAAAGAGCCTGCTAATAATGGGTCTTCAGTGAATTCTCCATTAGAGTGGGGTTTTGGGGGCCTGAGGGAACCTGGAACGGTTCAGTTCCCTTCGGTTAAGGGCACGAAAATGTCCTCTTCGCCTAGAAAGGTGAAGCGGAAATGGCAGAGTAGGGAGGAGAGGAGGATCGATAGGGAGTATGATGTTGTAATTGTGCCATCAGATGGTGGTGGCTGCTTGTCAGGGTCTGAATCCGATGACTCGGACTGGTCCATTGGGTGGTTGGAACCTCATGGTTCTGGTTTCCAGAGTGATGATGAGTCGGATAATAGTTTTGCTGTGCTGGTGCCTTGCTATAGCCCTGGTTGCAAGGAGGTGGTGGAAGGTTCAAACAATGAGCTTTTGAGTGCCATCAAGAACCTCCCTGAGGAGTTCCCTCCTGGTCAAGATCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.82

Weight (kDa)

4.81

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	2 cut(s)	254, 309
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	3 cut(s)	254, 309, 457
AgsI	TTSAA	1 cut(s)	420
AjnI	CCWGG	3 cut(s)	121, 391, 469
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	109, 300
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	300
AxyI	CCTNAGG	2 cut(s)	113, 456
BaeGI	GKGCMC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	3 cut(s)	248, 256, 449
BciT130I	CCWGG	3 cut(s)	123, 393, 471
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	123, 393, 471
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	109, 300
BmiI	GGNNCC	4 cut(s)	110, 120, 318, 378
BmrFI	CCNGG	3 cut(s)	123, 393, 471
BpiI	GAAGAC	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 309, 457
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	2 cut(s)	113, 456
BseBI	CCWGG	3 cut(s)	123, 393, 471
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	254, 309, 457
BseMII	CTCAG	2 cut(s)	104, 447
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	221, 226, 473
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	219
BslI	CCNNNNNNNGG	3 cut(s)	254, 309, 457
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	216, 478
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	105, 448
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	110, 120, 318, 378
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	216, 478
Bst2UI	CCWGG	3 cut(s)	123, 393, 471
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	113, 456
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstKTI	GATC	2 cut(s)	219, 481
BstMBI	GATC	2 cut(s)	216, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 396
BstNI	CCWGG	3 cut(s)	123, 393, 471
BstSCI	CCNGG	3 cut(s)	121, 391, 469
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	219
Bsu36I	CCTNAGG	2 cut(s)	113, 456
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 84
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	109, 300
ClaI	ATCGAT	1 cut(s)	219
CviAII	CATG	2 cut(s)	323, 482
CviJI	RGCY	5 cut(s)	58, 111, 264, 390, 430
CviKI_1	RGCY	5 cut(s)	58, 111, 264, 390, 430
DdeI	CTNAG	2 cut(s)	113, 456
DpnI	GATC	2 cut(s)	218, 480
DpnII	GATC	2 cut(s)	216, 478
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	60
Eco81I	CCTNAGG	2 cut(s)	113, 456
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	121, 391, 469
FaeI	CATG	2 cut(s)	326, 485
FaiI	YATR	4 cut(s)	231, 324, 387, 483
FatI	CATG	2 cut(s)	322, 481
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	326, 485
HinfI	GANTC	3 cut(s)	281, 290, 350
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	253, 280, 286, 295, 355
Hpy188III	TCNNGA	3 cut(s)	337, 445, 476
HpyAV	CCTTC	2 cut(s)	150, 407
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 396
HpyF3I	CTNAG	2 cut(s)	113, 456
Hsp92II	CATG	2 cut(s)	326, 485
Kzo9I	GATC	2 cut(s)	216, 478
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	174
MalI	GATC	2 cut(s)	218, 480
MboI	GATC	2 cut(s)	216, 478
MboII	GAAGA	2 cut(s)	66, 159
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	82, 240
MlyI	GAGTC	2 cut(s)	284, 359
MmeI	TCCRAC	2 cut(s)	294, 333
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	94, 158
MspR9I	CCNGG	3 cut(s)	123, 393, 471
MvaI	CCWGG	3 cut(s)	123, 393, 471
MwoI	GCNNNNNNNGC	2 cut(s)	193, 396
NdeII	GATC	2 cut(s)	216, 478
NlaIII	CATG	2 cut(s)	326, 485
NlaIV	GGNNCC	4 cut(s)	110, 120, 318, 378
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	2 cut(s)	254, 309
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	2 cut(s)	284, 358
PpsI	GAGTC	2 cut(s)	284, 358
Psp6I	CCWGG	3 cut(s)	121, 391, 469
PspGI	CCWGG	3 cut(s)	121, 391, 469
PspN4I	GGNNCC	4 cut(s)	110, 120, 318, 378
PspPI	GGNCC	2 cut(s)	109, 300
PstNI	CAGNNNCTG	1 cut(s)	278
RseI	CAYNNNNRTG	2 cut(s)	94, 158
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	216, 478
Sau96I	GGNCC	2 cut(s)	109, 300
SchI	GAGTC	2 cut(s)	284, 359
ScrFI	CCNGG	3 cut(s)	123, 393, 471
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	7 cut(s)	124, 183, 322, 408, 418, 432, 453
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	94, 158
Sse9I	AATT	2 cut(s)	82, 240
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	121, 391, 469
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	82, 240
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	12, 84
TseI	GCWGC	1 cut(s)	264
TspRI	CASTG	2 cut(s)	12, 84
Van91I	CCANNNNNTGG	2 cut(s)	254, 309
VpaK11BI	GGWCC	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.