Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

43526494 .. 43530941

Gene Structure 4448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G532300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTGTGGCTTTTACCCAGCTTTCATGGTGGTTGTGGAGTGGAAAGCAGAAAGAGCCTAGAATCTCCAATTCATCTTCTTTAAGTTCTTCACCCGACCCCGGCATGTGGGAATCTGATGGTTTAAAGTTTCCTTCGGTTAAGGGGGCCAGTATGGCCTCATCATCATCAAGAAGGGTGAAACGCAAATGGCATAGTCGGGAAGAACGGAAAATTGATAGGGAATATGATCTTGTTCTAGTTCCATCTGAGGGAGGATGTTTTTCTGGTTCTGAGTCTGATGACTCGGATTGGTCAGTTGGATGGTTGGAGCCTCATGGACCTGGGTTTCGGAGTGATGATGATACAGACGATAGTTTTGCTGTGCTGGTTCCATGCTATGGGCATGTTATTCATGATATGGTGAAGGATCCAAAGAGCAATATCTTGAGCACTGTTGGGAACATCCCAGATGGTTATTCCGATGAAAGCAAGAAATATATGGAAGAGTGGCTCTCTTCTCTCAGGAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.16

Weight (kDa)

5.08

Isoelectric Point (pI)

62.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AclWI	GGATC	2 cut(s)	404, 417
AfiI	CCNNNNNNNGG	4 cut(s)	101, 108, 251, 380
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	22, 513
AluI	AGCT	2 cut(s)	22, 513
Alw21I	GWGCWC	1 cut(s)	434
AlwI	GGATC	2 cut(s)	404, 417
AoxI	GGCC	2 cut(s)	147, 156
ArsI	GACNNNNNNTTYG	4 cut(s)	312, 341, 344, 373
AspS9I	GGNCC	2 cut(s)	147, 320
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	84, 190, 415
AvaII	GGWCC	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	434
BccI	CCATC	4 cut(s)	113, 253, 297, 446
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	2 cut(s)	60, 239
BglI	GCCNNNNNGGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	102, 324
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	147, 320
BmiI	GGNNCC	4 cut(s)	148, 312, 372, 411
BmrFI	CCNGG	2 cut(s)	102, 324
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpuEI	CTTGAG	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	100, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 108, 251, 380
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	100, 323
BseGI	GGATG	3 cut(s)	263, 308, 444
BseLI	CCNNNNNNNGG	4 cut(s)	101, 108, 251, 380
BseMII	CTCAG	2 cut(s)	240, 264
BseNI	ACTGG	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	149, 158
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	4 cut(s)	101, 108, 251, 380
BsnI	GGCC	2 cut(s)	149, 158
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	229, 409
BspANI	GGCC	2 cut(s)	149, 158
BspCNI	CTCAG	3 cut(s)	241, 265, 516
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	148, 312, 372, 411
BspPI	GGATC	2 cut(s)	404, 417
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	100, 323
BssMI	GATC	2 cut(s)	229, 409
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	480, 502
BstDEI	CTNAG	3 cut(s)	249, 273, 503
BstF5I	GGATG	3 cut(s)	263, 308, 444
BstKTI	GATC	2 cut(s)	232, 412
BstMBI	GATC	2 cut(s)	229, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 155
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	109, 389
BstSCI	CCNGG	2 cut(s)	100, 322
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	149, 158
BtsCI	GGATG	3 cut(s)	263, 308, 444
BtsIMutI	CAGTG	1 cut(s)	432
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	147, 320
CviAII	CATG	6 cut(s)	27, 106, 317, 375, 386, 395
CviJI	RGCY	9 cut(s)	5, 11, 22, 58, 149, 158, 313, 493, 513
CviKI_1	RGCY	9 cut(s)	5, 11, 22, 58, 149, 158, 313, 493, 513
DdeI	CTNAG	3 cut(s)	249, 273, 503
DpnI	GATC	2 cut(s)	231, 411
DpnII	GATC	2 cut(s)	229, 409
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	480, 502
EarI	CTCTTC	2 cut(s)	480, 502
Eco47I	GGWCC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	6 cut(s)	30, 109, 320, 378, 389, 398
FatI	CATG	6 cut(s)	26, 105, 316, 374, 385, 394
FokI	GGATG	3 cut(s)	270, 315, 431
FspBI	CTAG	2 cut(s)	60, 239
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	149, 158
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	6 cut(s)	30, 109, 320, 378, 389, 398
HinfI	GANTC	4 cut(s)	63, 113, 275, 284
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	84, 190, 415
Hpy188I	TCNGA	7 cut(s)	118, 250, 274, 280, 289, 333, 463
Hpy188III	TCNNGA	5 cut(s)	171, 200, 395, 427, 505
HpyAV	CCTTC	3 cut(s)	144, 168, 400
HpyCH4III	ACNGT	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 155
HpyF3I	CTNAG	3 cut(s)	249, 273, 503
Hsp92II	CATG	6 cut(s)	30, 109, 320, 378, 389, 398
Kzo9I	GATC	2 cut(s)	229, 409
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	32, 115, 163, 252, 309, 336, 353, 462, 490
MaeI	CTAG	2 cut(s)	60, 239
MalI	GATC	2 cut(s)	231, 411
MboI	GATC	2 cut(s)	229, 409
MboII	GAAGA	5 cut(s)	69, 81, 215, 489, 497
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	2 cut(s)	70, 213
MlyI	GAGTC	2 cut(s)	278, 284
MmeI	TCCRAC	2 cut(s)	280, 288
MnlI	CCTC	4 cut(s)	169, 244, 248, 324
MseI	TTAA	3 cut(s)	83, 125, 141
MspA1I	CMGCKG	1 cut(s)	513
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	102, 324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	55, 155
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	229, 409
NlaIII	CATG	6 cut(s)	30, 109, 320, 378, 389, 398
NlaIV	GGNNCC	4 cut(s)	148, 312, 372, 411
NspI	RCATGY	2 cut(s)	109, 389
PagI	TCATGA	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	63, 113
PflMI	CCANNNNNTGG	1 cut(s)	380
PleI	GAGTC	2 cut(s)	278, 283
PpsI	GAGTC	2 cut(s)	278, 283
Psp6I	CCWGG	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	4 cut(s)	148, 312, 372, 411
PspPI	GGNCC	2 cut(s)	147, 320
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	83, 125, 141
Sau3AI	GATC	2 cut(s)	229, 409
Sau96I	GGNCC	2 cut(s)	147, 320
SchI	GAGTC	2 cut(s)	278, 284
ScrFI	CCNGG	2 cut(s)	102, 324
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	3 cut(s)	24, 325, 515
SfiI	GGCCNNNNNGGCC	1 cut(s)	155
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	2 cut(s)	70, 213
SspMI	CTAG	2 cut(s)	60, 239
StyD4I	CCNGG	2 cut(s)	100, 322
TaaI	ACNGT	1 cut(s)	436
TasI	AATT	2 cut(s)	70, 213
TfiI	GAWTC	2 cut(s)	63, 113
Tru1I	TTAA	3 cut(s)	83, 125, 141
Tru9I	TTAA	3 cut(s)	83, 125, 141
TscAI	CASTG	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	15, 63, 383, 480
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	320
XceI	RCATGY	2 cut(s)	109, 389
XspI	CTAG	2 cut(s)	60, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.