Rorug07G0290100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002086
Physical Location & Seq
Reverse (-)
28248825 .. 28254033
5209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0290100.1

Sequence Viewer

Length: 786 bp
ATGGCGTACCAGCCGCTTCCGGGCCGGAACTCCGTTTCCAGCTCCAGCTCCGGCGCTTCCGGATTCCACTTCATCAACTCCCCCTTCGGGGACACCACTTACACCAAGCTCTTCGTCGGCGGCCTCGCCTGGGAAACCCAGAGCGAGACCATGGGACGCTATTTCGAGCAATTCGGCCAGATTCTTGAGGCCGTTGTTATTACTGATAAGAACACCGGCCGATCCAAGGGCTATGGTTTTGTCACTTTCCAGGAGCCGGAGGCTGCTGCCAGGGCATGTGCTGATCCAACTCCAGTTATTGATGGCCGCCGCGCTAATTGTAATCTGGCTTCACTCCGGCGCCCTCGGCCGCATATGAGTTATGTACGTTCAGCACCGGCTTCTCCGTATATTGGAAGCAGCATGCAAGCTCCTCGTGGGGCTTATGTCGGAGCATATGGCTACCAGCAACCTCTTCCGTACAACTATCCACAAGGGATGATGTTTCCTCCTTATGGGTATGCAACTTACGGGCCGGAATACGTTTATTCACAGGGTGCTCACAATTCTTACGCGGGTCAGCAGTATCTTCAGATATATGGAGTTCCAGGGACGGTTAATACTCTGTATTCCTATGCACAACTGGGTCAAACCATTCCAGGTGGTCAGGGTTATCCAACAGTACACAGATATGCAATGCCTGCTCAGCAGATAATCCCATTTGGACCCAGTGTTAATGCAGTAACAACTACACCAGTCCCTACAATTCAAGCACCATATTCCACAGGTCTTCTGATTGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.3

Weight (kDa)

8.72

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 93 7.9e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 339
AccII CGCG 2 cut(s) 312, 554
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 6 cut(s) 14, 120, 307, 310, 350, 554
AclWI GGATC 2 cut(s) 216, 278
AcoI YGGCCR 4 cut(s) 175, 217, 304, 347
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 340
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 4 cut(s) 8, 366, 461, 663
AfiI CCNNNNNNNGG 8 cut(s) 20, 87, 88, 130, 226, 256, 392, 494
AgsI TTSAA 2 cut(s) 749, 779
AjnI CCWGG 5 cut(s) 128, 249, 269, 586, 637
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 4 cut(s) 42, 48, 109, 410
AluI AGCT 4 cut(s) 42, 48, 109, 410
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 216, 278
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 8 cut(s) 22, 121, 175, 189, 217, 304, 347, 512
ApeKI GCWGC 3 cut(s) 263, 266, 399
AspLEI GCGC 3 cut(s) 56, 314, 342
AspS9I GGNCC 3 cut(s) 22, 512, 704
AsuC2I CCSGG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 704
BanI GGYRCC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 313, 345
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 3 cut(s) 250, 253, 411
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 5 cut(s) 130, 251, 271, 588, 639
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 140
BfoI RGCGCY 2 cut(s) 57, 343
BisI GCNGC 8 cut(s) 14, 121, 264, 267, 307, 310, 350, 400
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 8 cut(s) 15, 122, 265, 268, 308, 311, 351, 401
Bme1390I CCNGG 6 cut(s) 21, 130, 251, 271, 588, 639
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 3 cut(s) 22, 512, 704
BmiI GGNNCC 3 cut(s) 255, 341, 706
BmrFI CCNGG 6 cut(s) 21, 130, 251, 271, 588, 639
BmrI ACTGGG 2 cut(s) 632, 702
BmuI ACTGGG 2 cut(s) 632, 702
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 2 cut(s) 28, 276
Bpu1102I GCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 6 cut(s) 129, 150, 225, 270, 344, 587
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 87, 88, 130, 226, 256, 392, 494
Bse118I RCCGGY 2 cut(s) 215, 376
Bse1I ACTGG 4 cut(s) 293, 627, 708, 734
Bse3DI GCAATG 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 5 cut(s) 130, 251, 271, 588, 639
BseDI CCNNGG 6 cut(s) 129, 150, 225, 270, 344, 587
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 8 cut(s) 20, 87, 88, 130, 226, 256, 392, 494
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 4 cut(s) 293, 627, 708, 734
BseRI GAGGAG 1 cut(s) 402
BseX3I CGGCCG 2 cut(s) 217, 347
BseXI GCAGC 3 cut(s) 250, 253, 411
Bsh1236I CGCG 2 cut(s) 312, 554
Bsh1285I CGRYCG 2 cut(s) 220, 350
BshFI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 514
BshNI GGYRCC 1 cut(s) 339
BsiEI CGRYCG 2 cut(s) 220, 350
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 515
BslFI GGGAC 4 cut(s) 104, 168, 604, 722
BslI CCNNNNNNNGG 8 cut(s) 20, 87, 88, 130, 226, 256, 392, 494
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 4 cut(s) 104, 168, 604, 722
BsnI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 514
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 541
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 2 cut(s) 221, 283
Bsp1720I GCTNAGC 1 cut(s) 684
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 6 cut(s) 14, 120, 307, 310, 350, 554
BspANI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 514
BspCNI CTCAG 1 cut(s) 697
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 2 cut(s) 312, 554
BspLI GGNNCC 3 cut(s) 255, 341, 706
BspPI GGATC 2 cut(s) 216, 278
BspQI GCTCTTC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 339
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 2 cut(s) 215, 376
BsrI ACTGG 4 cut(s) 293, 627, 708, 734
BssAI RCCGGY 2 cut(s) 215, 376
BssECI CCNNGG 6 cut(s) 129, 150, 225, 270, 344, 587
BssMI GATC 2 cut(s) 221, 283
BssNI GRCGYC 1 cut(s) 340
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 150, 225
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 5 cut(s) 130, 251, 271, 588, 639
Bst4CI ACNGT 2 cut(s) 595, 661
Bst6I CTCTTC 2 cut(s) 116, 459
BstACI GRCGYC 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 404, 408, 681
BstDEI CTNAG 1 cut(s) 684
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 483
BstFNI CGCG 2 cut(s) 312, 554
BstH2I RGCGCY 2 cut(s) 57, 343
BstHHI GCGC 3 cut(s) 56, 314, 342
BstKTI GATC 2 cut(s) 224, 286
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 221, 283
BstMCI CGRYCG 2 cut(s) 220, 350
BstMWI GCNNNNNNNGC 4 cut(s) 272, 346, 680, 685
BstNI CCWGG 5 cut(s) 130, 251, 271, 588, 639
BstNSI RCATGY 2 cut(s) 279, 406
BstSCI CCNGG 6 cut(s) 19, 128, 249, 269, 586, 637
BstUI CGCG 2 cut(s) 312, 554
BstV1I GCAGC 3 cut(s) 250, 253, 411
BstV2I GAAGAC 1 cut(s) 761
BstZI CGGCCG 2 cut(s) 217, 347
BsuRI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 514
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 404, 408, 681
CfoI GCGC 3 cut(s) 56, 314, 342
Cfr10I RCCGGY 2 cut(s) 215, 376
Cfr13I GGNCC 3 cut(s) 22, 512, 704
CseI GACGC 1 cut(s) 165
Csp6I GTAC 4 cut(s) 7, 365, 460, 662
CviAII CATG 3 cut(s) 151, 276, 403
CviQI GTAC 4 cut(s) 7, 365, 460, 662
DdeI CTNAG 1 cut(s) 684
DinI GGCGCC 1 cut(s) 341
DpnI GATC 2 cut(s) 223, 285
DpnII GATC 2 cut(s) 221, 283
DraIII CACNNNGTG 1 cut(s) 536
EaeI YGGCCR 4 cut(s) 175, 217, 304, 347
EagI CGGCCG 2 cut(s) 217, 347
Eam1104I CTCTTC 2 cut(s) 116, 459
EarI CTCTTC 2 cut(s) 116, 459
EclXI CGGCCG 2 cut(s) 217, 347
Eco130I CCWWGG 2 cut(s) 150, 225
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 704
Eco52I CGGCCG 2 cut(s) 217, 347
Eco57I CTGAAG 1 cut(s) 554
EcoRII CCWGG 5 cut(s) 128, 249, 269, 586, 637
EcoT14I CCWWGG 2 cut(s) 150, 225
EgeI GGCGCC 1 cut(s) 341
EheI GGCGCC 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 150, 225
FaeI CATG 3 cut(s) 154, 279, 406
FaqI GGGAC 4 cut(s) 104, 168, 604, 722
FatI CATG 3 cut(s) 150, 275, 402
FauI CCCGC 1 cut(s) 547
FauNDI CATATG 2 cut(s) 354, 436
Fnu4HI GCNGC 8 cut(s) 14, 121, 264, 267, 307, 310, 350, 400
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 8 cut(s) 14, 121, 264, 267, 307, 310, 350, 400
GlaI GCGC 3 cut(s) 55, 313, 341
GluI GCNGC 8 cut(s) 14, 121, 264, 267, 307, 310, 350, 400
GsuI CTGGAG 2 cut(s) 28, 276
HaeII RGCGCY 2 cut(s) 57, 343
HaeIII GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 514
HapII CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 515
HgaI GACGC 1 cut(s) 165
HhaI GCGC 3 cut(s) 56, 314, 342
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 3 cut(s) 154, 279, 406
Hin6I GCGC 3 cut(s) 54, 312, 340
HinP1I GCGC 3 cut(s) 54, 312, 340
HinfI GANTC 2 cut(s) 63, 181
HpaII CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 515
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 3 cut(s) 431, 573, 774
Hpy188III TCNNGA 2 cut(s) 60, 185
Hpy8I GTNNAC 1 cut(s) 664
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 595, 661
HpyCH4IV ACGT 3 cut(s) 367, 522, 782
HpyCH4V TGCA 5 cut(s) 406, 503, 617, 674, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 346, 680, 685
HpyF3I CTNAG 1 cut(s) 684
HpySE526I ACGT 3 cut(s) 367, 522, 782
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 3 cut(s) 154, 279, 406
HspAI GCGC 3 cut(s) 54, 312, 340
KasI GGCGCC 1 cut(s) 339
Kpn2I TCCGGA 1 cut(s) 59
Kzo9I GATC 2 cut(s) 221, 283
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 5 cut(s) 47, 53, 253, 415, 431
Lsp1109I GCAGC 3 cut(s) 250, 253, 411
MaeII ACGT 3 cut(s) 367, 522, 782
MaeIII GTNAC 2 cut(s) 241, 721
MalI GATC 2 cut(s) 223, 285
MboI GATC 2 cut(s) 221, 283
MboII GAAGA 4 cut(s) 103, 446, 560, 761
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 4 cut(s) 170, 316, 544, 744
Mly113I GGCGCC 1 cut(s) 340
MmeI TCCRAC 3 cut(s) 311, 409, 680
MnlI CCTC 7 cut(s) 134, 181, 253, 354, 423, 462, 498
MroI TCCGGA 1 cut(s) 59
MseI TTAA 2 cut(s) 597, 714
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 515
MspR9I CCNGG 6 cut(s) 21, 130, 251, 271, 588, 639
MvaI CCWGG 5 cut(s) 130, 251, 271, 588, 639
MvnI CGCG 2 cut(s) 312, 554
MwoI GCNNNNNNNGC 4 cut(s) 272, 346, 680, 685
NarI GGCGCC 1 cut(s) 340
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 150
NdeI CATATG 2 cut(s) 354, 436
NdeII GATC 2 cut(s) 221, 283
NlaIII CATG 3 cut(s) 154, 279, 406
NlaIV GGNNCC 3 cut(s) 255, 341, 706
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 2 cut(s) 279, 406
PaeI GCATGC 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 63, 181
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 8 cut(s) 15, 122, 265, 268, 308, 311, 351, 401
PluTI GGCGCC 1 cut(s) 343
Psp6I CCWGG 5 cut(s) 128, 249, 269, 586, 637
PspGI CCWGG 5 cut(s) 128, 249, 269, 586, 637
PspN4I GGNNCC 3 cut(s) 255, 341, 706
PspPI GGNCC 3 cut(s) 22, 512, 704
RsaI GTAC 4 cut(s) 8, 366, 461, 663
RsaNI GTAC 4 cut(s) 7, 365, 460, 662
RseI CAYNNNNRTG 1 cut(s) 669
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 597, 714
SatI GCNGC 8 cut(s) 14, 121, 264, 267, 307, 310, 350, 400
Sau3AI GATC 2 cut(s) 221, 283
Sau96I GGNCC 3 cut(s) 22, 512, 704
ScrFI CCNGG 6 cut(s) 21, 130, 251, 271, 588, 639
SduI GDGCHC 1 cut(s) 541
SfoI GGCGCC 1 cut(s) 341
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 406
Sse9I AATT 4 cut(s) 170, 316, 544, 744
SsiI CCGC 6 cut(s) 14, 120, 307, 310, 350, 554
SspDI GGCGCC 1 cut(s) 339
StyD4I CCNGG 6 cut(s) 19, 128, 249, 269, 586, 637
StyI CCWWGG 2 cut(s) 150, 225
TaaI ACNGT 2 cut(s) 595, 661
TaiI ACGT 3 cut(s) 370, 525, 785
TaqI TCGA 1 cut(s) 165
TasI AATT 4 cut(s) 170, 316, 544, 744
TatI WGTACW 1 cut(s) 661
TauI GCSGC 5 cut(s) 16, 123, 309, 312, 352
TfiI GAWTC 2 cut(s) 63, 181
Tru1I TTAA 2 cut(s) 597, 714
Tru9I TTAA 2 cut(s) 597, 714
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 3 cut(s) 263, 266, 399
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 3 cut(s) 22, 375, 447
TspRI CASTG 1 cut(s) 715
VpaK11BI GGWCC 1 cut(s) 704
XceI RCATGY 2 cut(s) 279, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.