Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Reverse (-)

9528193 .. 9531788

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTTTGGCTTTTACCAATCTTTCGTGGTGGTTGTGGAGTGGAAAGCAGAAGGAGCCTAGAATCTCTAATGGAACCTGTTTAAATTCTTCCCCTGAATCGGGTTTGTGGGAATCTGATGCATTAAAGTTTCCATCGGTTAAAGGGGCCAATATGGCTGCATCTAGAAAGGTGAAGCGGAAATGGCATAGTCGGGAAGAAAGGAAAATTGATAGGGAATATGATGGTGTTCTCGTTCCATCTGATGGAGAGTGTGTTTCTAGTTCTGAATCTGACGACTCGGATTGGTCAATTGGATGGTTGGAGCCTCATGGACCTGGGTTCCAGAGTGAAGATGATGCAGACGATAGTTTCGCTGTGCTGGTTCCATGCTATGGGCATGCTATTCATGATATGGTGGGGAAATCGAAGAACAAAGATCAGAATACTATTGGGAGCATCCCAGATGGTTATTCAGATGAGAGCAAGAAATTTATGGAAGAGTGGCTCTCTTCCCTAAGGAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.91

Weight (kDa)

5.0

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	245, 374
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	85, 470
AfiI	CCNNNNNNNGG	4 cut(s)	100, 101, 245, 374
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	507
AluI	AGCT	1 cut(s)	507
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	85, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspS9I	GGNCC	2 cut(s)	147, 314
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	6 cut(s)	142, 218, 239, 247, 291, 440
BciT130I	CCWGG	1 cut(s)	318
BfaI	CTAG	3 cut(s)	60, 165, 261
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	147, 314
BmiI	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 366
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	109, 170, 328, 447
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 101, 245, 374
Bse21I	CCTNAGG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	302, 438
BseLI	CCNNNNNNNGG	4 cut(s)	100, 101, 245, 374
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	149
BslI	CCNNNNNNNGG	4 cut(s)	100, 101, 245, 374
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 366
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	318
Bst6I	CTCTTC	2 cut(s)	474, 496
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	302, 438
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 155, 184
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	302, 438
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	147, 314
CviAII	CATG	4 cut(s)	311, 369, 380, 389
CviJI	RGCY	8 cut(s)	5, 11, 58, 149, 158, 307, 487, 507
CviKI_1	RGCY	8 cut(s)	5, 11, 58, 149, 158, 307, 487, 507
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
DraI	TTTAAA	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	474, 496
EarI	CTCTTC	2 cut(s)	474, 496
Eco47I	GGWCC	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	4 cut(s)	314, 372, 383, 392
FatI	CATG	4 cut(s)	310, 368, 379, 388
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	309, 425
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	3 cut(s)	60, 165, 261
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	314, 372, 383, 392
HinfI	GANTC	5 cut(s)	63, 98, 113, 269, 278
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	7 cut(s)	118, 244, 268, 274, 283, 423, 457
Hpy188III	TCNNGA	4 cut(s)	165, 194, 325, 389
HpyAV	CCTTC	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	122, 161, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 155, 184
HpyF3I	CTNAG	1 cut(s)	497
Hsp92II	CATG	4 cut(s)	314, 372, 383, 392
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	3 cut(s)	55, 304, 435
LpnPI	CCDG	7 cut(s)	91, 108, 303, 330, 338, 347, 456
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	4 cut(s)	109, 170, 328, 447
MaeI	CTAG	3 cut(s)	60, 165, 261
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	6 cut(s)	81, 209, 344, 421, 483, 491
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	4 cut(s)	85, 207, 291, 470
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	3 cut(s)	83, 125, 141
MspA1I	CMGCKG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	55, 155, 184
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	314, 372, 383, 392
NlaIV	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 366
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	383
PagI	TCATGA	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	63, 98, 113, 269
PflMI	CCANNNNNTGG	2 cut(s)	245, 374
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	6 cut(s)	57, 76, 148, 306, 323, 366
PspPI	GGNCC	2 cut(s)	147, 314
PvuII	CAGCTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	83, 125, 141
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	2 cut(s)	147, 314
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	4 cut(s)	80, 174, 319, 509
SfaNI	GCATC	4 cut(s)	109, 170, 328, 447
SinI	GGWCC	1 cut(s)	314
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	4 cut(s)	85, 207, 291, 470
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	3 cut(s)	60, 165, 261
StyD4I	CCNGG	1 cut(s)	316
TaqI	TCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	85, 207, 291, 470
TfiI	GAWTC	4 cut(s)	63, 98, 113, 269
Tru1I	TTAA	3 cut(s)	83, 125, 141
Tru9I	TTAA	3 cut(s)	83, 125, 141
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	377
Van91I	CCANNNNNTGG	2 cut(s)	245, 374
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	85, 470
XbaI	TCTAGA	1 cut(s)	164
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	3 cut(s)	60, 165, 261
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.