Rorug02G0171400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002086
Physical Location & Seq
Reverse (-)
15494770 .. 15495075
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0171400.1

Sequence Viewer

Length: 306 bp
ATGGCCAATGCTACCTATACTTGCTTATTTTTCCTACTAGTTATTTTCTCTCATGAACTCATTTCATGTACTGAAGGAAGGAATTTGAAACTAACTAGTAAGAAGTACAAGTGTGGCAAGTGTTTGAGTCCAGATATTGATGCAAAATCCATTGCAGGAAATCAGGGTACTGGAGATTCAAACAGTAATGATCAGATTCAGAGCCCACCAGCTGTACCACTACCAGCAAGCCCTGGTCATGTAGAAGCTTTTCGACCCACAACCCCTGGCCATAGTCCTGGAGTTGGCCATTCCATTCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.69

Weight (kDa)

7.73

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 3, 268, 286
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 4 cut(s) 70, 107, 169, 216
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 88, 180
AhlI ACTAGT 2 cut(s) 37, 95
AjnI CCWGG 3 cut(s) 232, 265, 277
AluBI AGCT 2 cut(s) 212, 248
AluI AGCT 2 cut(s) 212, 248
AoxI GGCC 3 cut(s) 3, 268, 286
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 249
BalI TGGCCA 3 cut(s) 5, 270, 288
BanII GRGCYC 1 cut(s) 206
BciT130I CCWGG 3 cut(s) 234, 267, 279
BclI TGATCA 1 cut(s) 190
BcuI ACTAGT 2 cut(s) 37, 95
BfaI CTAG 2 cut(s) 38, 96
Bme1390I CCNGG 3 cut(s) 234, 267, 279
BmrFI CCNGG 3 cut(s) 234, 267, 279
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 2 cut(s) 192, 300
BsaJI CCNNGG 2 cut(s) 232, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 3 cut(s) 234, 267, 279
BseDI CCNNGG 2 cut(s) 232, 265
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 175
BshFI GGCC 3 cut(s) 5, 270, 288
BslI CCNNNNNNNGG 1 cut(s) 284
BsnI GGCC 3 cut(s) 5, 270, 288
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 190
BspANI GGCC 3 cut(s) 5, 270, 288
BspHI TCATGA 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 232, 265
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 3 cut(s) 234, 267, 279
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 3 cut(s) 234, 267, 279
BstSCI CCNGG 3 cut(s) 232, 265, 277
BstXI CCANNNNNNTGG 1 cut(s) 278
BsuRI GGCC 3 cut(s) 5, 270, 288
Cac8I GCNNGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 52
Csp6I GTAC 4 cut(s) 69, 106, 168, 215
CviAII CATG 3 cut(s) 53, 66, 239
CviJI RGCY 7 cut(s) 5, 204, 212, 231, 248, 270, 288
CviKI_1 RGCY 7 cut(s) 5, 204, 212, 231, 248, 270, 288
CviQI GTAC 4 cut(s) 69, 106, 168, 215
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 3 cut(s) 3, 268, 286
Eco24I GRGCYC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 3 cut(s) 232, 265, 277
EcoT38I GRGCYC 1 cut(s) 206
FaeI CATG 3 cut(s) 56, 69, 242
FaiI YATR 5 cut(s) 18, 54, 67, 240, 273
FatI CATG 3 cut(s) 52, 65, 238
FbaI TGATCA 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 206
FspBI CTAG 2 cut(s) 38, 96
GsuI CTGGAG 2 cut(s) 192, 300
HaeIII GGCC 3 cut(s) 5, 270, 288
Hin1II CATG 3 cut(s) 56, 69, 242
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 3 cut(s) 127, 176, 196
Hpy188I TCNGA 2 cut(s) 195, 201
Hpy188III TCNNGA 2 cut(s) 53, 131
HpyAV CCTTC 2 cut(s) 68, 72
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 143, 155
Hsp92II CATG 3 cut(s) 56, 69, 242
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 38, 96
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 3 cut(s) 5, 270, 288
MluCI AATT 1 cut(s) 82
MluNI TGGCCA 3 cut(s) 5, 270, 288
MlyI GAGTC 1 cut(s) 136
Mox20I TGGCCA 3 cut(s) 5, 270, 288
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 3 cut(s) 5, 270, 288
Msp20I TGGCCA 3 cut(s) 5, 270, 288
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 3 cut(s) 234, 267, 279
MvaI CCWGG 3 cut(s) 234, 267, 279
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 56, 69, 242
PagI TCATGA 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 176, 196
PfoI TCCNGGA 1 cut(s) 277
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 3 cut(s) 232, 265, 277
PspGI CCWGG 3 cut(s) 232, 265, 277
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 4 cut(s) 70, 107, 169, 216
RsaNI GTAC 4 cut(s) 69, 106, 168, 215
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 3 cut(s) 234, 267, 279
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 17, 214, 250
SfaNI GCATC 1 cut(s) 130
SpeI ACTAGT 2 cut(s) 37, 95
Sse9I AATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 38, 96
StyD4I CCNGG 3 cut(s) 232, 265, 277
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 253
TasI AATT 1 cut(s) 82
TatI WGTACW 2 cut(s) 68, 105
TfiI GAWTC 2 cut(s) 176, 196
TspDTI ATGAA 2 cut(s) 54, 69
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 2 cut(s) 38, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.