Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002086

Physical Location & Seq

Genomic Coordinates Forward (+)

25677314 .. 25680689

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1198200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTGTGGCTTTTACCCAGCTTTCATGGTGGTTGTGGAGTGGAAAGAAAAAAGAGCCTATAATCCCAAAGGGGTCCTCCTTAAATTCTTCCCCTGAGTCGAGAAGGGTGAGGCGCAAATGGTGTAGTCGGGAAGAACGGAAAATTGATAGGGAATATGATGTTGTTCTTGTGCCATCTGAGGGTGTATGTGTTTCTGGTTCTGAGTCTGAGGACTCCGATTGGTCGGTTGGATGGTTGGAGCCTCTTGGACCTGGGTTCCCGAGTGATGACGATGCAGACGATAGTTTTGCCGTGCTGGTTCCATGCTATGGCCATGTTATTCATGATATGGTGGGGGATTCAAAGAACAATTTCTTGAGCACTGTTGGGAACATCCCAGATGGCCATTCAGATGAGAGCACGAAATATATGGAAGAGTGGCTCTCTTCTCTGAGAAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.61

Weight (kDa)

4.76

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38060 AT4G38060 AT4G38060 AT4G38060
fragaria_vesca	FvH4_1g19630 FvH4_5g34720
malus_domestica	MD01G1039500.v1.1 MD08G1198200.v1.1 MD15G1312200.v1.1 MD15G1385500.v1.1
prunus_persica	Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.1G532300_v2.0.a1 Prupe.6G201800_v2.0.a1 Prupe.6G201800_v2.0.a1
pyrus_communis	pycom01g06720 pycom08g17050 pycom15g27580 pycom15g34560
rosa_chinensis	RchiOBHm_Chr2g0111191 RchiOBHm_Chr7g0235401
rosa_laevigata	RLG00000001163 RLG00000015136 RLG00000017872
rosa_multiflora	Rmu_sc0004657.1_g000081 Rmu_sc0021708.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132640 Rroxscaffold_3G00226060 Rroxscaffold_3G00241310
rosa_rugosa	Rorug02G0171400 Rorug07G0290100 Rorug07G0290100 Rorug07G0290200.1
rosa_samantha	Rh2AG224400 Rh2BG236100 Rh2CG227500 Rh2DG232100 Rh7AG445200 Rh7BG417000 Rh7CG465900 Rh7DG433900
rosa_wichuraiana	Rw2G017330 Rw7G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AcoI	YGGCCR	2 cut(s)	313, 385
AcsI	RAATTY	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	182, 311
AgsI	TTSAA	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	22, 444
AluI	AGCT	2 cut(s)	22, 444
Alw21I	GWGCWC	2 cut(s)	365, 404
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	2 cut(s)	313, 385
ApoI	RAATTY	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	75, 251
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	75, 251
BalI	TGGCCA	2 cut(s)	315, 387
Bbv12I	GWGCWC	2 cut(s)	365, 404
BccI	CCATC	3 cut(s)	184, 228, 377
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	75, 251
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	75, 251
BmiI	GGNNCC	4 cut(s)	76, 243, 260, 303
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	265
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpuEI	CTTGAG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 311
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	2 cut(s)	239, 375
BseLI	CCNNNNNNNGG	2 cut(s)	182, 311
BseMII	CTCAG	5 cut(s)	87, 171, 195, 201, 425
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	315, 387
BsiHKAI	GWGCWC	2 cut(s)	365, 404
BsiHKCI	CYCGRG	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	182, 311
BsnI	GGCC	2 cut(s)	315, 387
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	365, 404
BspANI	GGCC	2 cut(s)	315, 387
BspCNI	CTCAG	5 cut(s)	88, 172, 196, 202, 426
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	76, 243, 260, 303
BssECI	CCNNGG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	411, 433
BstDEI	CTNAG	5 cut(s)	96, 180, 204, 210, 434
BstF5I	GGATG	2 cut(s)	239, 375
BstHHI	GCGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	315, 387
BtsCI	GGATG	2 cut(s)	239, 375
BtsIMutI	CAGTG	1 cut(s)	363
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	75, 251
CviAII	CATG	4 cut(s)	27, 306, 317, 326
CviJI	RGCY	9 cut(s)	5, 11, 22, 58, 244, 315, 387, 424, 444
CviKI_1	RGCY	9 cut(s)	5, 11, 22, 58, 244, 315, 387, 424, 444
DdeI	CTNAG	5 cut(s)	96, 180, 204, 210, 434
EaeI	YGGCCR	2 cut(s)	313, 385
Eam1104I	CTCTTC	2 cut(s)	411, 433
EarI	CTCTTC	2 cut(s)	411, 433
Eco47I	GGWCC	2 cut(s)	75, 251
Eco88I	CYCGRG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	4 cut(s)	30, 309, 320, 329
FatI	CATG	4 cut(s)	26, 305, 316, 325
FokI	GGATG	2 cut(s)	246, 362
GlaI	GCGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	315, 387
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	30, 309, 320, 329
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	98, 206, 215, 341
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	6 cut(s)	181, 205, 211, 220, 394, 435
Hpy188III	TCNNGA	5 cut(s)	102, 131, 262, 326, 358
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	278
HpyF3I	CTNAG	5 cut(s)	96, 180, 204, 210, 434
Hsp92II	CATG	4 cut(s)	30, 309, 320, 329
HspAI	GCGC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	32, 108, 183, 240, 267, 284, 393
LweI	GCATC	1 cut(s)	265
MboII	GAAGA	4 cut(s)	81, 146, 420, 428
MhlI	GDGCHC	2 cut(s)	365, 404
MlsI	TGGCCA	2 cut(s)	315, 387
MluCI	AATT	3 cut(s)	85, 144, 352
MluNI	TGGCCA	2 cut(s)	315, 387
MlyI	GAGTC	3 cut(s)	107, 209, 215
MmeI	TCCRAC	2 cut(s)	211, 219
MnlI	CCTC	5 cut(s)	88, 105, 175, 205, 255
Mox20I	TGGCCA	2 cut(s)	315, 387
MroXI	GAANNNNTTC	1 cut(s)	353
MscI	TGGCCA	2 cut(s)	315, 387
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	2 cut(s)	315, 387
MspA1I	CMGCKG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
NlaIII	CATG	4 cut(s)	30, 309, 320, 329
NlaIV	GGNNCC	4 cut(s)	76, 243, 260, 303
PagI	TCATGA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	311
PleI	GAGTC	3 cut(s)	106, 209, 214
PpsI	GAGTC	3 cut(s)	106, 209, 214
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	4 cut(s)	76, 243, 260, 303
PspPI	GGNCC	2 cut(s)	75, 251
PspPPI	RGGWCCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	83
Sau96I	GGNCC	2 cut(s)	75, 251
SchI	GAGTC	3 cut(s)	107, 209, 215
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	365, 404
SetI	ASST	3 cut(s)	24, 256, 446
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	2 cut(s)	75, 251
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	3 cut(s)	85, 144, 352
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	85, 144, 352
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	15, 314
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	75, 251
XapI	RAATTY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.