Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009645

Physical Location & Seq

Genomic Coordinates Forward (+)

12984252 .. 12984710

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTGGGGCCTTCTCTTTCTCATGACCAGCTCTTTAGCATTGTTGATTTCTCACCAAGCTGGGTGTATGAAAACTCTGAAATCAAGGTTTTGAACACAGGAAGATTTTTGAAAAGTCAACATGCAGAAAGCTGTAAATGGTCTTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTATAGCAGATGGTGTTCTTCGTTGTTATGCTCCCATACTCCCATACACAAGGCTGGAAGGGTTCCTTTCTATGTGTCATGTTCCAATTGGCTGGCTTGTAGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 CG-1 IQ TIG

Protein Analysis

96

Amino Acids

10.74

Weight (kDa)

5.2

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20830
rosa_chinensis	RchiOBHm_Chr2g0113341
rosa_laevigata	RLG00000018056 RLG00000018057
rosa_multiflora	Rmu_co8050506.1_g000001 Rmu_sc0007415.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129420 Rroxscaffold_2G00129470 Rroxscaffold_7G00197620
rosa_rugosa	Rorug02G0186400
rosa_samantha	Rh2AG219200 Rh2AG240900 Rh2BG255000 Rh2CG245200 Rh2DG225400 Rh2DG248900 Rh6BG157200 Rh6DG142400 Rh7AG282700 Rh7CG302000 Rh7DG286600
rosa_wichuraiana	Rw0G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	94, 112
AluBI	AGCT	3 cut(s)	31, 60, 132
AluI	AGCT	3 cut(s)	31, 60, 132
AoxI	GGCC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	3 cut(s)	9, 168, 242
Bpu10I	CCTNAGC	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	165
BseYI	CCCAGC	2 cut(s)	4, 60
BshFI	GGCC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	9, 168, 242
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	3 cut(s)	23, 122, 257
CviJI	RGCY	7 cut(s)	10, 31, 60, 132, 232, 270, 274
CviKI_1	RGCY	7 cut(s)	10, 31, 60, 132, 232, 270, 274
DdeI	CTNAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	8
FaeI	CATG	3 cut(s)	26, 125, 260
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	3 cut(s)	22, 121, 256
GsaI	CCCAGC	2 cut(s)	8, 64
HaeIII	GGCC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	26, 125, 260
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	21, 230
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	26, 125, 260
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	41, 46, 84, 183, 218, 256
MboII	GAAGA	2 cut(s)	114, 188
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	2 cut(s)	157, 169
MunI	CAATTG	1 cut(s)	264
NlaIII	CATG	3 cut(s)	26, 125, 260
NlaIV	GGNNCC	3 cut(s)	9, 168, 242
NspI	RCATGY	1 cut(s)	125
PagI	TCATGA	1 cut(s)	22
PspFI	CCCAGC	2 cut(s)	4, 60
PspN4I	GGNNCC	3 cut(s)	9, 168, 242
PspPI	GGNCC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	6 cut(s)	33, 62, 90, 134, 168, 180
Sse9I	AATT	1 cut(s)	264
TasI	AATT	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	84
XceI	RCATGY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.