Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009645

Physical Location & Seq

Genomic Coordinates Reverse (-)

25473980 .. 25494307

Gene Structure 20328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG157200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGCTGGAAGCTCATACTAGGGTTTGCACCAGGCCTTCGCAGACCAAGCCTCTCGGTGAGGACCAGGCGATGAAGGTCCGCGACACCGCCCTCGCTATTGGCTCCGACGAAGCCATTCCCAAGAGCGACGTCAATTGGGTCGATTCCGAAAATGGGTCGGTGCCCAGATCAGATTCCAAGGTTTTGGGGGAGAAGCGGGTTGGTGTTAACTTGGGAGGTGAAGATGAACTTGGGCTTAGAAAACGGATTAAGATGCGAGATCTTGAATCAGTGTGCCGTGCTGAAGTCCGCCACATATGGATCCTGGGAACCAAAAGAAGTAGAGAAAAGATATGGGTCCGCCATCAAAAACAAGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.67

Weight (kDa)

9.3

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20830
rosa_chinensis	RchiOBHm_Chr2g0113341
rosa_laevigata	RLG00000018056 RLG00000018057
rosa_multiflora	Rmu_co8050506.1_g000001 Rmu_sc0007415.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129420 Rroxscaffold_2G00129470 Rroxscaffold_7G00197620
rosa_rugosa	Rorug02G0186400
rosa_samantha	Rh2AG219200 Rh2AG240900 Rh2BG255000 Rh2CG245200 Rh2DG225400 Rh2DG248900 Rh6BG157200 Rh6DG142400 Rh7AG282700 Rh7CG302000 Rh7DG286600
rosa_wichuraiana	Rw0G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	163
AccII	CGCG	1 cut(s)	84
AciI	CCGC	5 cut(s)	82, 90, 199, 292, 343
AclWI	GGATC	2 cut(s)	298, 311
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	32, 66, 306
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	14, 362
AluI	AGCT	2 cut(s)	14, 362
AlwI	GGATC	2 cut(s)	298, 311
AoxI	GGCC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	3 cut(s)	64, 79, 340
AsuHPI	GGTGA	2 cut(s)	71, 233
AvaII	GGWCC	3 cut(s)	64, 79, 340
BaeGI	GKGCMC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	163
BccI	CCATC	1 cut(s)	354
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	3 cut(s)	34, 68, 308
BfaI	CTAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	34, 68, 308
Bme18I	GGWCC	3 cut(s)	64, 79, 340
BmgT120I	GGNCC	3 cut(s)	64, 79, 340
BmiI	GGNNCC	5 cut(s)	106, 165, 305, 313, 341
BmrFI	CCNGG	3 cut(s)	34, 68, 308
BmsI	GCATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	180, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	34, 68, 308
BseDI	CCNNGG	2 cut(s)	180, 307
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	170, 262, 303
BspACI	CCGC	5 cut(s)	82, 90, 199, 292, 343
BspANI	GGCC	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	5 cut(s)	106, 165, 305, 313, 341
BspPI	GGATC	2 cut(s)	298, 311
BspT107I	GGYRCC	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	180, 307
BssMI	GATC	3 cut(s)	170, 262, 303
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	3 cut(s)	34, 68, 308
BstACI	GRCGYC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	173, 265, 306
BstMBI	GATC	3 cut(s)	170, 262, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	3 cut(s)	34, 68, 308
BstSCI	CCNGG	3 cut(s)	32, 66, 306
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	262, 303
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	2 cut(s)	262, 303
BsuRI	GGCC	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	64, 79, 340
CviJI	RGCY	7 cut(s)	14, 37, 52, 105, 116, 238, 362
CviKI_1	RGCY	7 cut(s)	14, 37, 52, 105, 116, 238, 362
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	172, 264, 305
DpnII	GATC	3 cut(s)	170, 262, 303
EciI	GGCGGA	2 cut(s)	281, 332
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	64, 79, 340
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	32, 66, 306
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaiI	YATR	4 cut(s)	18, 299, 301, 337
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FauI	CCCGC	1 cut(s)	192
FauNDI	CATATG	1 cut(s)	299
FspBI	CTAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	3 cut(s)	146, 176, 269
HpaI	GTTAAC	1 cut(s)	211
HphI	GGTGA	2 cut(s)	71, 233
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	109, 151, 175
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	113, 134
HpyAV	CCTTC	2 cut(s)	48, 70
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	170, 262, 303
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	19, 46, 53, 80, 181, 293, 320
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	132
MalI	GATC	3 cut(s)	172, 264, 305
MboI	GATC	3 cut(s)	170, 262, 303
MboII	GAAGA	1 cut(s)	236
MfeI	CAATTG	1 cut(s)	136
MflI	RGATCY	2 cut(s)	262, 303
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	55, 63, 104, 212
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	3 cut(s)	210, 252, 364
MspR9I	CCNGG	3 cut(s)	34, 68, 308
MunI	CAATTG	1 cut(s)	136
MvaI	CCWGG	3 cut(s)	34, 68, 308
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	3 cut(s)	170, 262, 303
NlaIV	GGNNCC	5 cut(s)	106, 165, 305, 313, 341
PceI	AGGCCT	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	146, 176, 269
Psp6I	CCWGG	3 cut(s)	32, 66, 306
PspGI	CCWGG	3 cut(s)	32, 66, 306
PspN4I	GGNNCC	5 cut(s)	106, 165, 305, 313, 341
PspPI	GGNCC	3 cut(s)	64, 79, 340
PsuI	RGATCY	2 cut(s)	262, 303
SaqAI	TTAA	3 cut(s)	210, 252, 364
Sau3AI	GATC	3 cut(s)	170, 262, 303
Sau96I	GGNCC	3 cut(s)	64, 79, 340
ScrFI	CCNGG	3 cut(s)	34, 68, 308
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	16, 81, 135, 186, 223, 364
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	3 cut(s)	64, 79, 340
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	5 cut(s)	82, 90, 199, 292, 343
SspMI	CTAG	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	3 cut(s)	32, 66, 306
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	3 cut(s)	146, 176, 269
Tru1I	TTAA	3 cut(s)	210, 252, 364
Tru9I	TTAA	3 cut(s)	210, 252, 364
TscAI	CASTG	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	89, 243
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	3 cut(s)	64, 79, 340
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	21
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.