Rh2AG219200

conserved protein UCP030365

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009645
Physical Location & Seq
Forward (+)
22730816 .. 22731946
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG219200.1

Sequence Viewer

Length: 342 bp
ATGCCCAAATCAGATTCCAAGGTTTTGGGGGAGAAGGGGGTTGGTGTTGAATTGGGAGGTGACGATGAACTTGGGCTTAGAAAATGGATTAAGATGCGGGATCTTGAATCAGTGTGCCGCGCTGAAGATTGTACCATGGCTGTTGATGGGAAGGCCGACTCCGACATGTGCTCTCAAATTTGGGTGAAGACGAAATCTAAACCGAAGTCTCCAAGCTTCCTACTCTCCTTCTTCCTCCACTTCTCCATTAGACTTGTCCCGAAGCCTCAGATCTCTGCCTCATCGTGGCCCATACTCGAATTGGTCATCTGCATCTTCCTCGTGGAAAGCTGCAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

7.59

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 97, 118
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 285
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 50, 107
AluBI AGCT 2 cut(s) 216, 330
AluI AGCT 2 cut(s) 216, 330
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 108
AoxI GGCC 2 cut(s) 153, 287
ApeKI GCWGC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 71, 196
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BcoDI GTCTC 1 cut(s) 213
BglII AGATCT 2 cut(s) 270, 336
BisI GCNGC 2 cut(s) 118, 331
BlsI GCNGC 2 cut(s) 119, 332
BmgT120I GGNCC 1 cut(s) 288
BmsI GCATC 2 cut(s) 84, 321
BpiI GAAGAC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 18, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 18, 135
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 155, 289
BsiHKAI GWGCWC 1 cut(s) 173
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 2 cut(s) 155, 289
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 3 cut(s) 100, 270, 336
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 97, 118
BspANI GGCC 2 cut(s) 155, 289
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 120
BspPI GGATC 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 18, 135
BssMI GATC 3 cut(s) 100, 270, 336
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 18, 135
Bst2BI CACGAG 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 77, 267
BstDSI CCRYGG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 103, 273, 339
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 100, 270, 336
BstNSI RCATGY 1 cut(s) 169
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 3 cut(s) 100, 270, 336
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 3 cut(s) 100, 270, 336
BsuRI GGCC 2 cut(s) 155, 289
BtgI CCRYGG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 117
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 136, 166
CviJI RGCY 7 cut(s) 76, 140, 155, 216, 265, 289, 330
CviKI_1 RGCY 7 cut(s) 76, 140, 155, 216, 265, 289, 330
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 77, 267
DpnI GATC 3 cut(s) 102, 272, 338
DpnII GATC 3 cut(s) 100, 270, 336
Eco130I CCWWGG 2 cut(s) 18, 135
Eco57I CTGAAG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 18, 135
ErhI CCWWGG 2 cut(s) 18, 135
FaeI CATG 2 cut(s) 139, 169
FaiI YATR 3 cut(s) 137, 167, 293
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 135, 165
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 118, 331
Fsp4HI GCNGC 2 cut(s) 118, 331
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 118, 331
HaeIII GGCC 2 cut(s) 155, 289
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 139, 169
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 3 cut(s) 14, 107, 158
HphI GGTGA 2 cut(s) 71, 196
Hpy188I TCNGA 3 cut(s) 13, 163, 270
Hpy188III TCNNGA 2 cut(s) 104, 259
HpyAV CCTTC 3 cut(s) 28, 145, 238
HpyCH4V TGCA 2 cut(s) 312, 333
HpyF3I CTNAG 2 cut(s) 77, 267
Hsp92II CATG 2 cut(s) 139, 169
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 100, 270, 336
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 2 cut(s) 84, 321
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 102, 272, 338
MboI GATC 3 cut(s) 100, 270, 336
MboII GAAGA 4 cut(s) 137, 199, 223, 307
MflI RGATCY 3 cut(s) 100, 270, 336
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 3 cut(s) 50, 177, 299
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 5 cut(s) 50, 245, 276, 289, 329
MseI TTAA 1 cut(s) 90
MvnI CGCG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 135
NdeII GATC 3 cut(s) 100, 270, 336
NlaIII CATG 2 cut(s) 139, 169
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 169
PciI ACATGT 1 cut(s) 165
PfeI GAWTC 2 cut(s) 14, 107
PkrI GCNGC 2 cut(s) 119, 332
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PscI ACATGT 1 cut(s) 165
PspPI GGNCC 1 cut(s) 288
PsuI RGATCY 3 cut(s) 100, 270, 336
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 118, 331
Sau3AI GATC 3 cut(s) 100, 270, 336
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 173
SetI ASST 4 cut(s) 24, 61, 218, 332
SfaNI GCATC 2 cut(s) 84, 321
Sse9I AATT 3 cut(s) 50, 177, 299
SsiI CCGC 2 cut(s) 97, 118
StyI CCWWGG 2 cut(s) 18, 135
TaqI TCGA 1 cut(s) 297
TasI AATT 3 cut(s) 50, 177, 299
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 14, 107
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.