Rh2AG240900

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009645
Physical Location & Seq
Reverse (-)
26309751 .. 26316717
6967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG240900.1

Sequence Viewer

Length: 669 bp
ATGGATTCAGTCAAGCAATACGACCTTCAATTTCATCTTTCAAACGCAGAAACTATTTCAAAGAGAAATGATAGCATTGAGGGAACAACTAATCAACCTTATGCTATTAAGCTTGACAGTTTCAATCGATGGATGAGTGAAGAACTGGAAGATGTGGATGAGCCACAAATGCAGTCCGGTTCTGAGGCCTACTGGGATACTGTTCAAAGTGAGAATGAGGTTGACGACTCCAGTGTTCCCCTCCAAGTATGCTTGGATTGCTATATGCTGGGGCCTTCTCTTTCTCATGACCAACTCTTTAGCATTGTTGATTTCTCACCAAACTGGGCATATGAATACTCTGAAATCAAGGTTTTGATAACAGGAAGATTTTTGAAAAATCAACATGCGGAAAGTTGTAAATGGTCATGTATGTTTGGGGAAGTTGAAGTTCCTGCTGAGGTCCGCGACACTGCCCTCGCTATTGGCTCCGACGAAGCCATTCCCAAGAGCGACGTCAATCGGGTCGATTCCGAAAATGGGTCGGTGCCCAGATCAGATTCCCAGGTTTTGGGGGAGAAGCGGGTTGGTGTTGAATTGGGAGGTGAAGATGAACTTGGGCTTAGAAAACGGATTAAGATGCGAGATCTTGAATCAGTGTGCCGTGCTGAAGGTACTTGTTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

222

Amino Acids

25.01

Weight (kDa)

4.4

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 550
AccII CGCG 1 cut(s) 447
AciI CCGC 3 cut(s) 389, 445, 562
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 2 cut(s) 519, 550
AgsI TTSAA 9 cut(s) 29, 42, 60, 124, 206, 376, 428, 575, 632
AjnI CCWGG 1 cut(s) 543
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 2 cut(s) 186, 272
Asp700I GAANNNNTTC 1 cut(s) 480
AspS9I GGNCC 2 cut(s) 272, 442
AsuHPI GGTGA 2 cut(s) 309, 596
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 531
BanI GGYRCC 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 438
BccI CCATC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 627
BciT130I CCWGG 1 cut(s) 545
BciVI GTATCC 1 cut(s) 190
BfuI GTATCC 1 cut(s) 190
BglII AGATCT 1 cut(s) 625
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 272, 442
BmiI GGNNCC 3 cut(s) 273, 469, 528
BmrFI CCNGG 1 cut(s) 545
BmrI ACTGGG 2 cut(s) 202, 334
BmsI GCATC 1 cut(s) 609
BmuI ACTGGG 2 cut(s) 202, 334
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 550
Bse1I ACTGG 4 cut(s) 150, 197, 231, 329
BseBI CCWGG 1 cut(s) 545
BseCI ATCGAT 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 2 cut(s) 138, 163
BseLI CCNNNNNNNGG 2 cut(s) 519, 550
BseMII CTCAG 2 cut(s) 174, 429
BseNI ACTGG 4 cut(s) 150, 197, 231, 329
BseSI GKGCMC 1 cut(s) 531
BseYI CCCAGC 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 188, 274
BshNI GGYRCC 1 cut(s) 526
BshVI ATCGAT 1 cut(s) 127
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 519, 550
BsnI GGCC 2 cut(s) 188, 274
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 2 cut(s) 533, 625
BspACI CCGC 3 cut(s) 389, 445, 562
BspANI GGCC 2 cut(s) 188, 274
BspCNI CTCAG 2 cut(s) 175, 430
BspDI ATCGAT 1 cut(s) 127
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 273, 469, 528
BspT107I GGYRCC 1 cut(s) 526
BsrI ACTGG 4 cut(s) 150, 197, 231, 329
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 2 cut(s) 533, 625
BssNI GRCGYC 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 119, 202
BstACI GRCGYC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 183, 438, 602
BstF5I GGATG 2 cut(s) 138, 163
BstFNI CGCG 1 cut(s) 447
BstKTI GATC 2 cut(s) 536, 628
BstMBI GATC 2 cut(s) 533, 625
BstMWI GCNNNNNNNGC 2 cut(s) 169, 258
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 127
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 188, 274
BsuTUI ATCGAT 1 cut(s) 127
BtsCI GGATG 2 cut(s) 138, 163
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 3 cut(s) 238, 450, 642
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 272, 442
ClaI ATCGAT 1 cut(s) 127
Csp6I GTAC 1 cut(s) 654
CviAII CATG 3 cut(s) 287, 386, 408
CviJI RGCY 7 cut(s) 112, 163, 188, 274, 468, 479, 601
CviKI_1 RGCY 7 cut(s) 112, 163, 188, 274, 468, 479, 601
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 3 cut(s) 183, 438, 602
DpnI GATC 2 cut(s) 535, 627
DpnII GATC 2 cut(s) 533, 625
Eco147I AGGCCT 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 543
FaeI CATG 3 cut(s) 290, 389, 411
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FatI CATG 3 cut(s) 286, 385, 407
FauI CCCGC 1 cut(s) 555
FauNDI CATATG 1 cut(s) 331
FokI GGATG 2 cut(s) 145, 170
GsaI CCCAGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 2 cut(s) 188, 274
HapII CCGG 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 3 cut(s) 290, 389, 411
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 5 cut(s) 5, 227, 509, 539, 632
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 309, 596
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 184, 343, 472, 514, 538
Hpy188III TCNNGA 2 cut(s) 287, 629
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 476, 497
HpyAV CCTTC 3 cut(s) 35, 285, 644
HpyCH4III ACNGT 2 cut(s) 119, 202
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 258
HpyF3I CTNAG 3 cut(s) 183, 438, 602
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 3 cut(s) 290, 389, 411
Kzo9I GATC 2 cut(s) 533, 625
LmnI GCTCC 1 cut(s) 473
LweI GCATC 1 cut(s) 609
MaeII ACGT 1 cut(s) 495
MalI GATC 2 cut(s) 535, 627
MboI GATC 2 cut(s) 533, 625
MboII GAAGA 4 cut(s) 152, 161, 378, 599
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 3 cut(s) 29, 575, 664
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 7 cut(s) 73, 178, 211, 251, 433, 467, 575
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 4 cut(s) 108, 615, 663, 667
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 169, 258
NdeI CATATG 1 cut(s) 331
NdeII GATC 2 cut(s) 533, 625
NlaIII CATG 3 cut(s) 290, 389, 411
NlaIV GGNNCC 3 cut(s) 273, 469, 528
NspI RCATGY 1 cut(s) 389
PacI TTAATTAA 1 cut(s) 667
PagI TCATGA 1 cut(s) 286
PceI AGGCCT 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 4 cut(s) 5, 509, 539, 632
PflMI CCANNNNNTGG 1 cut(s) 550
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 273, 469, 528
PspPI GGNCC 2 cut(s) 272, 442
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
SaqAI TTAA 4 cut(s) 108, 615, 663, 667
Sau3AI GATC 2 cut(s) 533, 625
Sau96I GGNCC 2 cut(s) 272, 442
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 1 cut(s) 609
SinI GGWCC 1 cut(s) 442
Sse9I AATT 3 cut(s) 29, 575, 664
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 3 cut(s) 389, 445, 562
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 543
TaaI ACNGT 2 cut(s) 119, 202
TaiI ACGT 1 cut(s) 498
TaqI TCGA 2 cut(s) 127, 507
TasI AATT 3 cut(s) 29, 575, 664
TfiI GAWTC 4 cut(s) 5, 509, 539, 632
Tru1I TTAA 4 cut(s) 108, 615, 663, 667
Tru9I TTAA 4 cut(s) 108, 615, 663, 667
TscAI CASTG 3 cut(s) 238, 457, 642
TspDTI ATGAA 3 cut(s) 23, 348, 606
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 3 cut(s) 238, 457, 642
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 442
XceI RCATGY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 480
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.